Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47092 * 240.00039 * 3 2 1 5 5 H 1.48493 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46875 * 120.00305 * 3 2 1 7 7 C 1.37873 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00029 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00076 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99778 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00255 * 180.02562 * 13 11 10 15 15 H 1.09007 * 110.26488 * 327.07048 * 14 13 11 16 16 C 1.51376 * 110.15889 * 89.25312 * 14 13 11 17 17 C 1.38495 * 130.38402 * 281.22622 * 16 14 13 18 18 C 1.38103 * 120.21117 * 180.38548 * 17 16 14 19 19 C 1.38254 * 119.93614 * 0.28342 * 18 17 16 20 20 C 1.38106 * 119.93398 * 359.97438 * 19 18 17 21 21 C 1.38218 * 109.75712 * 102.11559 * 16 14 13 22 22 C 1.51374 * 109.75861 * 359.57799 * 21 16 14 23 23 C 1.54340 * 110.30554 * 204.99975 * 14 13 11 24 24 H 1.09004 * 110.99632 * 25.62138 * 23 14 13 25 25 O 1.42906 * 110.82649 * 149.09326 * 23 14 13 26 26 H 0.97000 * 120.00405 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47229 * 59.99934 * 9 7 2 28 28 H 1.09005 * 109.47302 * 300.00280 * 9 7 2 29 29 H 0.96998 * 119.99607 * 0.02562 * 10 9 7 30 30 H 0.97004 * 120.00139 * 0.02562 * 13 11 10 31 31 H 1.08002 * 119.89840 * 0.66749 * 17 16 14 32 32 H 1.07997 * 120.03401 * 180.30507 * 18 17 16 33 33 H 1.08004 * 120.03135 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.89016 * 179.97438 * 20 19 18 35 35 H 1.08998 * 110.29975 * 136.37651 * 22 21 16 36 36 H 1.09005 * 110.29745 * 258.43222 * 22 21 16 37 37 H 0.96691 * 114.00208 * 174.42275 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5586 -5.1055 -0.0006 13 7 2.6298 -5.9077 -0.0021 14 6 2.1416 -7.2889 -0.0023 15 1 1.2067 -7.3590 0.5539 16 6 1.9498 -7.7742 -1.4233 17 6 0.9239 -7.5349 -2.3224 18 6 0.9587 -8.0989 -3.5826 19 6 2.0176 -8.9099 -3.9465 20 6 3.0388 -9.1539 -3.0494 21 6 3.0054 -8.5898 -1.7850 22 6 3.9841 -8.7002 -0.6354 23 6 3.2002 -8.2312 0.6088 24 1 3.8518 -7.6927 1.2969 25 8 2.5775 -9.3382 1.2637 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 3.1568 -3.4353 -0.0021 30 1 3.5835 -5.7304 -0.0024 31 1 0.0963 -6.9016 -2.0389 32 1 0.1596 -7.9065 -4.2831 33 1 2.0465 -9.3514 -4.9317 34 1 3.8655 -9.7878 -3.3343 35 1 4.3071 -9.7338 -0.5117 36 1 4.8445 -8.0536 -0.8080 37 1 3.1994 -10.0029 1.5899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336363065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = -81.586342 kcal Electronic energy + Delta-G solvation = -20861.857627 eV Core-core repulsion = 17602.587004 eV Total energy + Delta-G solvation = -3259.270623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75836 -40.37439 -38.21652 -36.30441 -35.79112 -34.44519 -33.72317 -31.94760 -29.52642 -29.04109 -27.50347 -24.68376 -23.51911 -22.22493 -21.93794 -21.63870 -19.96377 -18.48112 -18.13928 -17.38205 -17.03226 -16.49892 -16.41138 -16.34906 -15.93376 -15.48990 -15.29205 -14.89673 -14.46388 -14.34280 -14.02676 -14.00314 -13.80340 -13.44328 -12.93759 -12.73461 -12.67943 -12.37209 -12.23314 -11.89503 -11.81355 -11.50236 -11.34429 -11.07421 -10.79499 -10.36600 -9.80268 -9.66912 -9.53842 -8.28094 -6.45138 0.33081 0.44024 1.43321 1.48274 1.56185 1.76940 2.19634 2.39224 2.82588 3.06752 3.10780 3.41014 3.51793 3.72269 3.92302 4.04412 4.12734 4.20776 4.45679 4.52520 4.64278 4.72623 4.81462 4.92342 5.06653 5.10401 5.17513 5.25546 5.44193 5.47762 5.50672 5.58171 5.64908 5.68029 5.84060 6.08076 6.22218 6.66185 6.91776 7.23561 7.28998 7.69057 8.84196 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003888 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.302747 B = 7199.503765 C = 7666.932057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.287 3.713 10 N -0.720 5.720 11 C 0.694 3.306 12 O -0.644 6.644 13 N -0.716 5.716 14 C 0.199 3.801 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.103 4.103 23 C 0.110 3.890 24 H 0.106 0.894 25 O -0.574 6.574 26 H 0.269 0.731 27 H -0.017 1.017 28 H -0.015 1.015 29 H 0.405 0.595 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.799 -20.567 -3.486 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.163 3.837 10 N -0.374 5.374 11 C 0.394 3.606 12 O -0.526 6.526 13 N -0.373 5.373 14 C 0.093 3.907 15 H 0.080 0.920 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.155 4.155 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.139 4.139 23 C 0.051 3.949 24 H 0.123 0.877 25 O -0.384 6.384 26 H 0.078 0.922 27 H 0.001 0.999 28 H 0.003 0.997 29 H 0.241 0.759 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 13.031 -20.306 -3.595 24.394 hybrid contribution 0.380 1.056 0.101 1.126 sum 13.411 -19.250 -3.494 23.720 Atomic orbital electron populations 1.70145 1.08362 1.28655 1.49878 1.26087 0.95768 1.03939 0.93799 0.85171 0.77863 0.76410 0.79525 1.18640 1.21117 1.18522 1.21563 0.94341 0.90351 1.53063 0.89683 1.18403 0.88088 0.83350 0.93823 1.45264 1.10948 1.03569 1.77616 1.16263 0.85093 0.81570 0.77700 1.90843 1.16753 1.84797 1.60246 1.44621 1.09105 1.03276 1.80329 1.19895 0.98446 0.80133 0.92272 0.92040 1.20881 0.96289 0.99596 0.96386 1.20821 0.98240 0.99592 0.94918 1.21278 1.00239 0.98617 0.95370 1.21436 0.93332 0.97553 1.00723 1.20984 0.99745 1.00359 0.91951 1.20860 0.95681 0.96288 0.96051 1.21900 0.96791 1.05170 0.90080 1.22434 0.91388 0.87440 0.93673 0.87677 1.86481 1.39464 1.34986 1.77438 0.92239 0.99948 0.99703 0.75905 0.74989 0.89563 0.85002 0.82799 0.82730 0.86704 0.86727 0.74253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.29 16.37 5.43 85.63 0.46 16.83 16 10 N -0.72 -32.13 5.55 -482.29 -2.68 -34.81 16 11 C 0.69 30.56 8.56 179.06 1.53 32.10 16 12 O -0.64 -35.24 15.99 -3.99 -0.06 -35.30 16 13 N -0.72 -22.23 5.08 -458.18 -2.33 -24.56 16 14 C 0.20 5.98 2.96 44.92 0.13 6.11 16 15 H 0.06 2.40 7.52 -2.38 -0.02 2.38 16 16 C -0.13 -3.95 5.76 -19.59 -0.11 -4.07 16 17 C -0.12 -4.00 10.04 22.30 0.22 -3.77 16 18 C -0.14 -3.69 10.05 22.24 0.22 -3.46 16 19 C -0.11 -2.30 10.05 22.24 0.22 -2.07 16 20 C -0.11 -2.10 10.04 22.30 0.22 -1.88 16 21 C -0.09 -1.92 6.14 -19.59 -0.12 -2.04 16 22 C -0.10 -1.35 6.51 30.52 0.20 -1.15 16 23 C 0.11 2.01 4.04 31.51 0.13 2.13 16 24 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16 25 O -0.57 -10.82 13.41 -148.98 -2.00 -12.82 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H -0.01 -0.96 8.14 -2.38 -0.02 -0.98 16 29 H 0.41 14.67 8.34 -92.71 -0.77 13.90 16 30 H 0.41 9.15 8.65 -92.71 -0.80 8.35 16 31 H 0.09 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16 36 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.41 2.83 9.11 -74.06 -0.67 2.15 16 Total: -1.00 -83.16 320.84 -2.07 -85.23 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -1.13 Total: 25.67 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 3.82 Total: 8.89 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.72 Total: -116.34 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.06 Total: -48.12 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -83.16 -2.07 -85.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.645 kcal (2) G-P(sol) polarization free energy of solvation -83.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds