Wall clock time and date at job start Mon Mar 30 2020 01:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99882 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00305 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00121 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.26543 * 32.93139 * 14 13 11 16 16 C 1.51367 * 110.30723 * 270.74959 * 14 13 11 17 17 C 1.38491 * 130.38616 * 78.26080 * 16 14 13 18 18 C 1.38109 * 120.21702 * 180.02562 * 17 16 14 19 19 C 1.38259 * 119.92707 * 0.02562 * 18 17 16 20 20 C 1.38104 * 119.93995 * 359.97438 * 19 18 17 21 21 C 1.38214 * 109.75976 * 258.26496 * 16 14 13 22 22 C 1.51364 * 109.76195 * 359.97438 * 21 16 14 23 23 C 1.54349 * 105.16939 * 342.81222 * 22 21 16 24 24 H 1.08997 * 110.82516 * 144.57148 * 23 22 21 25 25 O 1.42903 * 110.82083 * 268.11965 * 23 22 21 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99769 * 0.02562 * 13 11 10 31 31 H 1.08002 * 119.89635 * 0.02562 * 17 16 14 32 32 H 1.08000 * 120.03566 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.02966 * 180.02562 * 19 18 17 34 34 H 1.07991 * 119.89142 * 179.97438 * 20 19 18 35 35 H 1.08992 * 110.30965 * 223.88880 * 22 21 16 36 36 H 1.09007 * 110.30818 * 101.73114 * 22 21 16 37 37 H 0.96697 * 114.00041 * 292.97179 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0156 13 7 2.6293 -5.9078 -0.0204 14 6 2.1409 -7.2890 -0.0255 15 1 1.2054 -7.3566 -0.5807 16 6 1.9497 -7.7838 1.3922 17 6 0.9289 -7.5430 2.2967 18 6 0.9672 -8.1104 3.5552 19 6 2.0280 -8.9211 3.9144 20 6 3.0468 -9.1624 3.0138 21 6 3.0096 -8.5951 1.7509 22 6 3.9854 -8.7016 0.5987 23 6 3.1982 -8.2296 -0.6422 24 1 3.8468 -7.6858 -1.3289 25 8 2.5742 -9.3351 -1.2986 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 3.1566 -3.4355 -0.0097 30 1 3.5830 -5.7306 -0.0199 31 1 0.1002 -6.9094 2.0170 32 1 0.1698 -7.9203 4.2584 33 1 2.0594 -9.3660 4.8980 34 1 3.8752 -9.7955 3.2953 35 1 4.3088 -9.7346 0.4710 36 1 4.8452 -8.0537 0.7699 37 1 3.1968 -9.9551 -1.7024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:36 Heat of formation + Delta-G solvation = -53.399170 kcal Electronic energy + Delta-G solvation = -20860.320110 eV Core-core repulsion = 17602.271774 eV Total energy + Delta-G solvation = -3258.048336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63931 -38.80862 -37.31474 -34.86401 -34.04428 -32.81409 -32.19699 -30.84583 -28.33062 -27.51735 -26.15863 -22.68566 -22.55325 -21.10141 -20.73767 -20.20723 -18.28268 -17.51525 -16.53231 -15.93559 -15.47586 -15.41838 -15.30257 -14.78342 -14.54044 -14.35066 -13.78722 -13.47813 -13.26218 -13.06551 -12.97746 -12.52045 -11.97845 -11.92818 -11.85190 -11.35628 -11.00727 -10.92448 -10.87885 -10.80414 -10.35506 -10.28861 -9.46840 -9.35861 -8.87431 -8.75072 -8.69618 -8.57080 -7.76958 -6.14123 -4.20612 1.33877 1.44657 3.13616 3.25541 3.31923 3.34534 3.77285 3.91897 4.10672 4.29324 4.37510 4.43344 4.76825 4.89332 5.02896 5.11993 5.16778 5.22047 5.28093 5.41172 5.53706 5.56222 5.76179 5.81616 6.03588 6.16260 6.45075 6.58498 6.69711 6.79030 7.04467 7.11179 7.39163 7.51924 7.55517 7.58704 7.90872 8.04849 8.77206 8.94127 9.33290 9.48765 10.96140 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.003889 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.839648 B = 7198.556990 C = 7666.025694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.696 3.304 12 O -0.595 6.595 13 N -0.743 5.743 14 C 0.208 3.792 15 H 0.107 0.893 16 C -0.098 4.098 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.112 4.112 23 C 0.098 3.902 24 H 0.080 0.920 25 O -0.551 6.551 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 -19.279 2.688 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.396 3.604 12 O -0.474 6.474 13 N -0.400 5.400 14 C 0.102 3.898 15 H 0.125 0.875 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.149 4.149 23 C 0.038 3.962 24 H 0.098 0.902 25 O -0.356 6.356 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.472 -18.982 2.867 20.983 hybrid contribution 1.839 0.843 -0.013 2.023 sum 10.311 -18.139 2.854 21.059 Atomic orbital electron populations 1.69982 1.06086 1.27250 1.48945 1.24942 0.94906 0.99376 0.94778 0.86415 0.79599 0.82693 0.78178 1.20491 1.21015 1.19797 1.21225 0.93248 0.90439 1.53110 0.91976 1.18987 0.87757 0.80992 0.97640 1.45709 1.10805 1.04287 1.77158 1.16089 0.85163 0.80941 0.78189 1.90871 1.14071 1.84047 1.58383 1.44983 1.08836 1.03959 1.82231 1.19681 0.98370 0.79979 0.91787 0.87506 1.20782 0.95027 0.97683 0.96500 1.20866 0.98282 0.98021 0.92665 1.21098 0.98756 0.98069 0.96346 1.21018 0.94425 0.98956 0.99158 1.20503 0.99168 1.00960 0.92774 1.20412 0.96132 0.97958 0.94613 1.21807 0.97470 1.02637 0.93032 1.22518 0.93285 0.87941 0.92445 0.90208 1.86528 1.37439 1.37455 1.74195 0.92468 0.95719 0.95691 0.78187 0.77569 0.85353 0.85884 0.86096 0.86577 0.89974 0.89347 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.20 5.43 -5.20 -0.03 7.18 16 10 N -0.73 -15.67 5.55 -66.42 -0.37 -16.04 16 11 C 0.70 14.51 8.56 -86.92 -0.74 13.77 16 12 O -0.60 -14.88 15.99 5.28 0.08 -14.79 16 13 N -0.74 -11.41 5.09 -58.78 -0.30 -11.71 16 14 C 0.21 3.06 2.96 -68.04 -0.20 2.86 16 15 H 0.11 1.89 7.52 -51.93 -0.39 1.50 16 16 C -0.10 -1.47 5.77 -104.21 -0.60 -2.07 16 17 C -0.08 -1.26 10.04 -39.54 -0.40 -1.65 16 18 C -0.12 -1.64 10.05 -39.62 -0.40 -2.04 16 19 C -0.12 -1.34 10.05 -39.62 -0.40 -1.74 16 20 C -0.12 -1.31 10.04 -39.53 -0.40 -1.71 16 21 C -0.09 -1.11 6.14 -104.21 -0.64 -1.75 16 22 C -0.11 -1.01 6.51 -26.85 -0.17 -1.18 16 23 C 0.10 1.01 4.04 -25.31 -0.10 0.91 16 24 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 25 O -0.55 -5.73 13.40 -35.23 -0.47 -6.20 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.39 7.07 8.34 -40.82 -0.34 6.73 16 30 H 0.39 4.69 8.65 -40.82 -0.35 4.34 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.38 1.95 9.12 45.56 0.42 2.36 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -34.81 320.87 -9.00 -43.81 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.00 Total: 10.59 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.50 Total: -0.88 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.07 Total: -53.29 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.39 Total: -21.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.81 -9.00 -43.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.584 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds