Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99882 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00305 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00121 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.26543 * 32.93139 * 14 13 11 16 16 C 1.51367 * 110.30723 * 270.74959 * 14 13 11 17 17 C 1.38491 * 130.38616 * 78.26080 * 16 14 13 18 18 C 1.38109 * 120.21702 * 180.02562 * 17 16 14 19 19 C 1.38259 * 119.92707 * 0.02562 * 18 17 16 20 20 C 1.38104 * 119.93995 * 359.97438 * 19 18 17 21 21 C 1.38214 * 109.75976 * 258.26496 * 16 14 13 22 22 C 1.51364 * 109.76195 * 359.97438 * 21 16 14 23 23 C 1.54349 * 105.16939 * 342.81222 * 22 21 16 24 24 H 1.08997 * 110.82516 * 144.57148 * 23 22 21 25 25 O 1.42903 * 110.82083 * 268.11965 * 23 22 21 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99769 * 0.02562 * 13 11 10 31 31 H 1.08002 * 119.89635 * 0.02562 * 17 16 14 32 32 H 1.08000 * 120.03566 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.02966 * 180.02562 * 19 18 17 34 34 H 1.07991 * 119.89142 * 179.97438 * 20 19 18 35 35 H 1.08992 * 110.30965 * 223.88880 * 22 21 16 36 36 H 1.09007 * 110.30818 * 101.73114 * 22 21 16 37 37 H 0.96697 * 114.00041 * 292.97179 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0156 13 7 2.6293 -5.9078 -0.0204 14 6 2.1409 -7.2890 -0.0255 15 1 1.2054 -7.3566 -0.5807 16 6 1.9497 -7.7838 1.3922 17 6 0.9289 -7.5430 2.2967 18 6 0.9672 -8.1104 3.5552 19 6 2.0280 -8.9211 3.9144 20 6 3.0468 -9.1624 3.0138 21 6 3.0096 -8.5951 1.7509 22 6 3.9854 -8.7016 0.5987 23 6 3.1982 -8.2296 -0.6422 24 1 3.8468 -7.6858 -1.3289 25 8 2.5742 -9.3351 -1.2986 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 3.1566 -3.4355 -0.0097 30 1 3.5830 -5.7306 -0.0199 31 1 0.1002 -6.9094 2.0170 32 1 0.1698 -7.9203 4.2584 33 1 2.0594 -9.3660 4.8980 34 1 3.8752 -9.7955 3.2953 35 1 4.3088 -9.7346 0.4710 36 1 4.8452 -8.0537 0.7699 37 1 3.1968 -9.9551 -1.7024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336363066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -81.652452 kcal Electronic energy + Delta-G solvation = -20861.545264 eV Core-core repulsion = 17602.271774 eV Total energy + Delta-G solvation = -3259.273490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75366 -40.37153 -38.21060 -36.30385 -35.79109 -34.44651 -33.72757 -31.94689 -29.52551 -29.04237 -27.49870 -24.68515 -23.51163 -22.22494 -21.92381 -21.63710 -19.96536 -18.51845 -18.14225 -17.38186 -17.03337 -16.49385 -16.41659 -16.34305 -15.93332 -15.44706 -15.28780 -14.89562 -14.46925 -14.34682 -14.03809 -14.01358 -13.81033 -13.41057 -12.92056 -12.73296 -12.71407 -12.37249 -12.22330 -11.89953 -11.81217 -11.47881 -11.34704 -11.07008 -10.80676 -10.36503 -9.80172 -9.66896 -9.53581 -8.28460 -6.45263 0.33189 0.44170 1.43359 1.46613 1.57442 1.76882 2.19607 2.39022 2.82891 3.06597 3.11550 3.40758 3.52163 3.71927 3.93207 4.04672 4.12858 4.20878 4.46491 4.51959 4.64211 4.73082 4.81511 4.92915 5.06803 5.10685 5.17787 5.25532 5.44131 5.47887 5.50800 5.58213 5.64962 5.68175 5.84049 6.08230 6.22197 6.66328 6.92117 7.23484 7.28942 7.69069 8.84087 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.003889 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.839648 B = 7198.556990 C = 7666.025694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.286 3.714 10 N -0.720 5.720 11 C 0.694 3.306 12 O -0.644 6.644 13 N -0.716 5.716 14 C 0.198 3.802 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.102 4.102 23 C 0.110 3.890 24 H 0.107 0.893 25 O -0.574 6.574 26 H 0.269 0.731 27 H -0.017 1.017 28 H -0.015 1.015 29 H 0.406 0.594 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.816 -20.487 3.220 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.163 3.837 10 N -0.374 5.374 11 C 0.394 3.606 12 O -0.526 6.526 13 N -0.373 5.373 14 C 0.092 3.908 15 H 0.080 0.920 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.155 4.155 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.139 4.139 23 C 0.050 3.950 24 H 0.124 0.876 25 O -0.383 6.383 26 H 0.078 0.922 27 H 0.001 0.999 28 H 0.003 0.997 29 H 0.241 0.759 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 13.051 -20.259 3.388 24.336 hybrid contribution 0.369 1.081 -0.157 1.153 sum 13.420 -19.178 3.231 23.629 Atomic orbital electron populations 1.70156 1.08364 1.28578 1.49955 1.26091 0.95772 1.03947 0.93819 0.85115 0.78445 0.76759 0.78623 1.19512 1.21010 1.17831 1.21597 0.94344 0.90340 1.52933 0.89678 1.18406 0.88098 0.83361 0.93833 1.45262 1.10947 1.03566 1.77612 1.16266 0.85092 0.81569 0.77699 1.90844 1.16753 1.84800 1.60239 1.44618 1.09105 1.03255 1.80328 1.19886 0.98457 0.80116 0.92309 0.92034 1.20881 0.96295 0.99613 0.96393 1.20821 0.98323 0.99556 0.94860 1.21281 1.00206 0.98611 0.95430 1.21435 0.93336 0.97570 1.00699 1.20985 0.99789 1.00339 0.91979 1.20863 0.95618 0.96323 0.96044 1.21883 0.96792 1.05104 0.90122 1.22425 0.91393 0.87410 0.93729 0.87572 1.86482 1.39225 1.38028 1.74569 0.92249 0.99934 0.99696 0.75901 0.74983 0.89551 0.84992 0.82805 0.82765 0.86831 0.86745 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.55 -30.66 9.28 25.60 0.24 -30.42 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.29 16.33 5.43 85.64 0.46 16.79 16 10 N -0.72 -32.07 5.55 -482.31 -2.68 -34.75 16 11 C 0.69 30.51 8.56 179.05 1.53 32.04 16 12 O -0.64 -35.19 15.99 -4.01 -0.06 -35.26 16 13 N -0.72 -22.16 5.09 -458.15 -2.33 -24.49 16 14 C 0.20 5.97 2.96 44.92 0.13 6.10 16 15 H 0.06 2.39 7.52 -2.39 -0.02 2.38 16 16 C -0.13 -3.98 5.77 -19.60 -0.11 -4.09 16 17 C -0.12 -4.00 10.04 22.30 0.22 -3.78 16 18 C -0.14 -3.71 10.05 22.24 0.22 -3.49 16 19 C -0.11 -2.31 10.05 22.24 0.22 -2.09 16 20 C -0.11 -2.13 10.04 22.30 0.22 -1.91 16 21 C -0.09 -1.93 6.14 -19.60 -0.12 -2.05 16 22 C -0.10 -1.37 6.51 30.52 0.20 -1.17 16 23 C 0.11 2.00 4.04 31.52 0.13 2.12 16 24 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 25 O -0.57 -10.77 13.40 -148.98 -2.00 -12.76 16 26 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 27 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 28 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.41 14.65 8.34 -92.71 -0.77 13.87 16 30 H 0.41 9.12 8.65 -92.70 -0.80 8.32 16 31 H 0.09 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.11 0.91 8.11 -2.39 -0.02 0.89 16 36 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.41 2.79 9.12 -74.06 -0.68 2.11 16 Total: -1.00 -83.14 320.87 -2.07 -85.22 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -1.13 Total: 25.61 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 3.82 Total: 8.70 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -4.72 Total: -116.19 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.06 Total: -48.02 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -83.14 -2.07 -85.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -83.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds