Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46706 * 269.99682 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99697 * 3 2 1 6 6 H 1.48493 * 109.47025 * 150.00272 * 3 2 1 7 7 C 1.37875 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99864 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00271 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47401 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47374 * 180.02562 * 10 9 7 12 12 C 1.46847 * 110.99939 * 66.04984 * 11 10 9 13 13 C 1.53028 * 109.52289 * 174.16346 * 12 11 10 14 14 C 1.53115 * 109.28362 * 59.17763 * 13 12 11 15 15 C 1.53123 * 109.15886 * 302.34747 * 14 13 12 16 16 H 1.09002 * 109.50371 * 297.70988 * 15 14 13 17 17 C 1.53002 * 109.50117 * 177.63301 * 15 14 13 18 18 S 1.81397 * 109.47233 * 65.07729 * 17 15 14 19 19 N 1.65605 * 104.44769 * 179.97438 * 18 17 15 20 20 O 1.42092 * 110.54492 * 291.62227 * 18 17 15 21 21 O 1.42108 * 110.54181 * 68.37440 * 18 17 15 22 22 C 1.46933 * 110.98323 * 301.82110 * 11 10 9 23 23 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46548 * 60.00467 * 9 7 2 25 25 H 1.08995 * 109.47449 * 300.00832 * 9 7 2 26 26 H 1.09000 * 109.46979 * 60.00189 * 10 9 7 27 27 H 1.09004 * 109.47328 * 300.00809 * 10 9 7 28 28 H 1.09001 * 109.46124 * 54.14038 * 12 11 10 29 29 H 1.09004 * 109.45292 * 294.17376 * 12 11 10 30 30 H 1.09005 * 109.50095 * 299.23443 * 13 12 11 31 31 H 1.09000 * 109.50556 * 179.12336 * 13 12 11 32 32 H 1.08994 * 109.52606 * 182.44091 * 14 13 12 33 33 H 1.09000 * 109.57447 * 62.27763 * 14 13 12 34 34 H 1.09005 * 109.46707 * 185.08124 * 17 15 14 35 35 H 1.08997 * 109.47080 * 305.07569 * 17 15 14 36 36 H 0.97002 * 119.99558 * 150.00266 * 19 18 17 37 37 H 0.96990 * 119.99793 * 329.99844 * 19 18 17 38 38 H 1.09000 * 109.45389 * 65.84140 * 22 11 10 39 39 H 1.09002 * 109.51493 * 305.83660 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4906 -2.6365 0.0001 12 6 6.0168 -2.0799 1.2530 13 6 7.5395 -2.2288 1.2790 14 6 8.1403 -1.4915 0.0791 15 6 7.5397 -2.0574 -1.2107 16 1 7.8029 -3.1111 -1.3029 17 6 8.0904 -1.2863 -2.4119 18 16 9.8759 -1.5758 -2.5494 19 7 10.3366 -0.6945 -3.8736 20 8 10.5647 -0.9672 -1.4658 21 8 10.1355 -2.9234 -2.9183 22 6 6.0168 -1.9132 -1.1656 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6796 0.8896 25 1 3.8745 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8897 27 1 3.6584 -3.1502 0.8903 28 1 5.5848 -2.6158 2.0982 29 1 5.7539 -1.0241 1.3198 30 1 7.8028 -3.2853 1.2260 31 1 7.9313 -1.8016 2.2021 32 1 9.2212 -1.6312 0.0695 33 1 7.9111 -0.4283 0.1517 34 1 7.5957 -1.6283 -3.3210 35 1 7.9046 -0.2209 -2.2759 36 1 11.2317 -0.3239 -3.9220 37 1 9.7114 -0.5490 -4.6007 38 1 5.7540 -0.8583 -1.0872 39 1 5.5856 -2.3282 -2.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336671465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = -86.651584 kcal Electronic energy + Delta-G solvation = -20309.876309 eV Core-core repulsion = 17185.829992 eV Total energy + Delta-G solvation = -3124.046317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21130 -37.22385 -36.14754 -35.08113 -33.49552 -32.85683 -31.97189 -29.54675 -27.24624 -25.44731 -22.94041 -22.14352 -20.81819 -19.65130 -19.13065 -17.80043 -17.61792 -16.92465 -16.18344 -15.73886 -15.22280 -14.74179 -14.57809 -14.41630 -14.03535 -13.51728 -13.19790 -13.06030 -12.57370 -12.35596 -12.28796 -12.17515 -12.12627 -12.12212 -11.56353 -11.47767 -11.01387 -10.97239 -10.88889 -10.74108 -10.42360 -10.32173 -10.11738 -9.92747 -9.77421 -9.28763 -8.61409 -7.73574 -6.12129 -4.10439 0.01852 2.62988 3.20808 3.29683 3.31694 3.41769 4.03239 4.13822 4.36435 4.54497 4.55721 4.82199 5.04759 5.11205 5.21017 5.29793 5.37825 5.54598 5.65691 5.68019 5.81403 5.88220 5.94083 6.02850 6.11072 6.20098 6.26383 6.32537 6.46039 6.65811 6.71379 7.10692 7.16081 7.42575 7.57609 7.78929 8.45593 8.92961 9.50229 11.01283 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.004447 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.299408 B = 6295.264823 C = 6701.440855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.046 4.046 10 C 0.067 3.933 11 N -0.542 5.542 12 C 0.049 3.951 13 C -0.114 4.114 14 C -0.145 4.145 15 C -0.073 4.073 16 H 0.093 0.907 17 C -0.617 4.617 18 S 2.614 3.386 19 N -1.254 6.254 20 O -0.960 6.960 21 O -0.962 6.962 22 C 0.066 3.934 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.419 0.581 37 H 0.413 0.587 38 H 0.044 0.956 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.126 -0.690 -5.936 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.085 4.085 10 C -0.060 4.060 11 N -0.265 5.265 12 C -0.079 4.079 13 C -0.152 4.152 14 C -0.182 4.182 15 C -0.093 4.093 16 H 0.112 0.888 17 C -0.747 4.747 18 S 2.706 3.294 19 N -0.926 5.926 20 O -0.950 6.950 21 O -0.951 6.951 22 C -0.063 4.063 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.248 0.752 37 H 0.239 0.761 38 H 0.062 0.938 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.668 -1.716 -5.248 21.393 hybrid contribution -0.585 2.497 -0.663 2.649 sum 20.083 0.781 -5.911 20.950 Atomic orbital electron populations 1.69908 1.06258 1.26905 1.50943 1.25024 0.94692 0.99058 0.94551 0.86801 0.80328 0.83876 0.78378 1.20399 1.21253 1.19294 1.21041 0.89217 0.94549 1.50931 0.90855 1.20162 0.97968 0.94103 0.96224 1.22164 0.83407 0.98354 1.02107 1.62297 1.09594 1.53172 1.01468 1.22108 0.94222 0.98669 0.92919 1.21559 0.95321 1.01025 0.97272 1.22078 1.00750 1.00859 0.94540 1.20958 0.97918 0.99490 0.90980 0.88843 1.30505 1.24696 1.11178 1.08351 1.04790 0.77113 0.74277 0.73254 1.53260 1.25285 1.75761 1.38263 1.93596 1.71112 1.77149 1.53157 1.93625 1.83212 1.35946 1.82329 1.22018 0.91537 0.97805 0.94959 0.92679 0.96551 0.97017 0.91245 0.91173 0.90667 0.94258 0.91050 0.91306 0.90350 0.91100 0.84553 0.84510 0.75204 0.76123 0.93763 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.05 -1.06 3.34 -27.89 -0.09 -1.16 16 10 C 0.07 1.30 5.30 -3.82 -0.02 1.28 16 11 N -0.54 -8.97 4.86 -234.59 -1.14 -10.11 16 12 C 0.05 0.75 5.05 -3.84 -0.02 0.73 16 13 C -0.11 -1.45 6.09 -26.66 -0.16 -1.61 16 14 C -0.14 -1.79 4.90 -26.61 -0.13 -1.92 16 15 C -0.07 -0.87 2.35 -90.54 -0.21 -1.09 16 16 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.62 -5.19 5.62 37.16 0.21 -4.98 16 18 S 2.61 24.02 5.62 -107.50 -0.60 23.41 16 19 N -1.25 -7.00 9.36 60.35 0.57 -6.43 16 20 O -0.96 -11.77 15.91 -57.54 -0.92 -12.69 16 21 O -0.96 -12.50 18.10 -57.54 -1.04 -13.54 16 22 C 0.07 0.98 4.12 -3.79 -0.02 0.96 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.39 5.74 -51.93 -0.30 0.09 16 25 H 0.01 0.27 5.93 -51.93 -0.31 -0.04 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 28 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 29 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.93 5.78 -51.93 -0.30 0.63 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.14 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.42 1.92 8.96 -34.47 -0.31 1.62 16 37 H 0.41 1.22 8.96 -34.47 -0.31 0.91 16 38 H 0.04 0.71 6.61 -51.93 -0.34 0.37 16 39 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -35.87 314.22 -9.19 -45.07 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.02 Total: 0.24 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.88 Total: -20.76 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.20 Total: -43.27 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.96 Total: -26.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 24.02 SS G_CDS: -0.60 Total: 23.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.87 -9.19 -45.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336671465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.583 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds