Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99850 * 2 1 4 4 H 1.48501 * 109.46706 * 269.99682 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99697 * 3 2 1 6 6 H 1.48493 * 109.47025 * 150.00272 * 3 2 1 7 7 C 1.37875 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99864 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00271 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47401 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47374 * 180.02562 * 10 9 7 12 12 C 1.46847 * 110.99939 * 66.04984 * 11 10 9 13 13 C 1.53028 * 109.52289 * 174.16346 * 12 11 10 14 14 C 1.53115 * 109.28362 * 59.17763 * 13 12 11 15 15 C 1.53123 * 109.15886 * 302.34747 * 14 13 12 16 16 H 1.09002 * 109.50371 * 297.70988 * 15 14 13 17 17 C 1.53002 * 109.50117 * 177.63301 * 15 14 13 18 18 S 1.81397 * 109.47233 * 65.07729 * 17 15 14 19 19 N 1.65605 * 104.44769 * 179.97438 * 18 17 15 20 20 O 1.42092 * 110.54492 * 291.62227 * 18 17 15 21 21 O 1.42108 * 110.54181 * 68.37440 * 18 17 15 22 22 C 1.46933 * 110.98323 * 301.82110 * 11 10 9 23 23 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46548 * 60.00467 * 9 7 2 25 25 H 1.08995 * 109.47449 * 300.00832 * 9 7 2 26 26 H 1.09000 * 109.46979 * 60.00189 * 10 9 7 27 27 H 1.09004 * 109.47328 * 300.00809 * 10 9 7 28 28 H 1.09001 * 109.46124 * 54.14038 * 12 11 10 29 29 H 1.09004 * 109.45292 * 294.17376 * 12 11 10 30 30 H 1.09005 * 109.50095 * 299.23443 * 13 12 11 31 31 H 1.09000 * 109.50556 * 179.12336 * 13 12 11 32 32 H 1.08994 * 109.52606 * 182.44091 * 14 13 12 33 33 H 1.09000 * 109.57447 * 62.27763 * 14 13 12 34 34 H 1.09005 * 109.46707 * 185.08124 * 17 15 14 35 35 H 1.08997 * 109.47080 * 305.07569 * 17 15 14 36 36 H 0.97002 * 119.99558 * 150.00266 * 19 18 17 37 37 H 0.96990 * 119.99793 * 329.99844 * 19 18 17 38 38 H 1.09000 * 109.45389 * 65.84140 * 22 11 10 39 39 H 1.09002 * 109.51493 * 305.83660 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 7 5.4906 -2.6365 0.0001 12 6 6.0168 -2.0799 1.2530 13 6 7.5395 -2.2288 1.2790 14 6 8.1403 -1.4915 0.0791 15 6 7.5397 -2.0574 -1.2107 16 1 7.8029 -3.1111 -1.3029 17 6 8.0904 -1.2863 -2.4119 18 16 9.8759 -1.5758 -2.5494 19 7 10.3366 -0.6945 -3.8736 20 8 10.5647 -0.9672 -1.4658 21 8 10.1355 -2.9234 -2.9183 22 6 6.0168 -1.9132 -1.1656 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6796 0.8896 25 1 3.8745 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8897 27 1 3.6584 -3.1502 0.8903 28 1 5.5848 -2.6158 2.0982 29 1 5.7539 -1.0241 1.3198 30 1 7.8028 -3.2853 1.2260 31 1 7.9313 -1.8016 2.2021 32 1 9.2212 -1.6312 0.0695 33 1 7.9111 -0.4283 0.1517 34 1 7.5957 -1.6283 -3.3210 35 1 7.9046 -0.2209 -2.2759 36 1 11.2317 -0.3239 -3.9220 37 1 9.7114 -0.5490 -4.6007 38 1 5.7540 -0.8583 -1.0872 39 1 5.5856 -2.3282 -2.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336671465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = -116.790270 kcal Electronic energy + Delta-G solvation = -20311.183221 eV Core-core repulsion = 17185.829992 eV Total energy + Delta-G solvation = -3125.353229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39057 -38.06051 -37.00089 -36.41344 -34.73375 -34.01585 -33.17715 -31.27971 -28.20838 -27.01530 -24.49557 -23.27167 -22.22271 -20.37895 -20.33420 -19.05119 -18.47523 -18.23873 -16.98094 -16.62945 -16.46848 -16.33012 -15.91703 -15.45059 -15.26233 -14.96577 -14.61448 -14.43228 -14.11258 -13.38809 -13.38077 -13.16142 -13.09757 -13.02442 -13.00415 -12.82241 -12.47691 -12.38259 -11.93321 -11.87507 -11.71139 -11.53952 -11.46070 -11.41591 -11.25798 -10.95990 -10.78865 -9.13839 -8.32957 -6.37184 -0.69366 1.28686 1.32071 1.42681 2.01205 2.30738 2.70286 3.01843 3.03973 3.38208 3.54554 3.67899 3.86867 4.13082 4.18370 4.29351 4.38482 4.46087 4.53654 4.59798 4.66926 4.77577 4.87641 4.91898 4.94950 5.00904 5.11395 5.17798 5.30263 5.37004 5.38837 5.42109 5.56182 6.07176 6.24335 6.31065 6.39490 6.71963 7.27411 8.83735 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.004447 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.299408 B = 6295.264823 C = 6701.440855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.034 0.966 9 C -0.036 4.036 10 C 0.077 3.923 11 N -0.540 5.540 12 C 0.046 3.954 13 C -0.111 4.111 14 C -0.149 4.149 15 C -0.075 4.075 16 H 0.094 0.906 17 C -0.610 4.610 18 S 2.633 3.367 19 N -1.240 6.240 20 O -0.993 6.993 21 O -1.003 7.003 22 C 0.060 3.940 23 H 0.266 0.734 24 H 0.015 0.985 25 H 0.020 0.980 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.426 0.574 37 H 0.427 0.573 38 H 0.035 0.965 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.284 0.631 -6.825 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.075 4.075 10 C -0.051 4.051 11 N -0.263 5.263 12 C -0.082 4.082 13 C -0.148 4.148 14 C -0.186 4.186 15 C -0.095 4.095 16 H 0.112 0.888 17 C -0.741 4.741 18 S 2.727 3.273 19 N -0.917 5.917 20 O -0.982 6.982 21 O -0.992 6.992 22 C -0.069 4.069 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.257 0.743 37 H 0.256 0.744 38 H 0.053 0.947 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.864 -0.409 -6.152 23.680 hybrid contribution -1.322 2.025 -0.397 2.451 sum 21.542 1.616 -6.549 22.573 Atomic orbital electron populations 1.70063 1.08254 1.28151 1.52532 1.25979 0.95536 1.03326 0.94136 0.85692 0.79297 0.78588 0.79264 1.18810 1.20989 1.17664 1.21391 0.91873 0.93207 1.50383 0.94722 1.20059 0.94547 0.96611 0.96276 1.21925 0.85647 0.95919 1.01609 1.62313 1.07257 1.53874 1.02827 1.22191 0.96179 0.97539 0.92308 1.21560 0.93135 1.01664 0.98482 1.22137 1.01067 1.00942 0.94499 1.20918 0.95859 1.00293 0.92412 0.88782 1.30432 1.23467 1.12114 1.08106 1.03920 0.77044 0.73344 0.73032 1.52861 1.26033 1.75059 1.37715 1.93553 1.72290 1.77444 1.54936 1.93584 1.84113 1.38572 1.82951 1.22143 0.93537 0.96908 0.94273 0.92461 0.96706 0.96129 0.91575 0.91992 0.90837 0.95710 0.90582 0.89705 0.89776 0.90867 0.81786 0.82489 0.74321 0.74351 0.94675 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.42 5.47 84.65 0.46 0.89 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.53 -30.16 9.66 25.60 0.25 -29.92 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.04 -1.65 3.34 29.85 0.10 -1.55 16 10 C 0.08 2.98 5.30 86.30 0.46 3.43 16 11 N -0.54 -17.17 4.86 -896.12 -4.35 -21.52 16 12 C 0.05 1.35 5.05 86.32 0.44 1.79 16 13 C -0.11 -2.59 6.09 30.64 0.19 -2.40 16 14 C -0.15 -3.32 4.90 30.67 0.15 -3.17 16 15 C -0.07 -1.59 2.35 -10.74 -0.03 -1.62 16 16 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.61 -8.23 5.62 71.98 0.40 -7.83 16 18 S 2.63 42.41 5.62 -56.49 -0.32 42.09 16 19 N -1.24 -10.35 9.36 37.02 0.35 -10.00 16 20 O -0.99 -22.45 15.91 -127.65 -2.03 -24.48 16 21 O -1.00 -24.51 18.10 -127.65 -2.31 -26.82 16 22 C 0.06 1.65 4.12 86.31 0.36 2.01 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.01 0.68 5.74 -2.38 -0.01 0.67 16 25 H 0.02 0.90 5.93 -2.39 -0.01 0.89 16 26 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.06 2.47 8.06 -2.38 -0.02 2.45 16 28 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 29 H 0.02 0.80 6.75 -2.38 -0.02 0.78 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.82 5.78 -2.39 -0.01 1.80 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.43 2.82 8.96 -96.74 -0.87 1.95 16 37 H 0.43 1.09 8.96 -96.76 -0.87 0.22 16 38 H 0.04 1.03 6.61 -2.39 -0.02 1.02 16 39 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 Total: -1.00 -77.92 314.22 -4.44 -82.36 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.73 Total: 10.04 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.78 Total: -38.36 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -3.71 Total: -90.32 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -4.34 Total: -51.31 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Atomic # 16 Polarization: 42.41 SS G_CDS: -0.32 Total: 42.09 kcal Total: -77.92 -4.44 -82.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336671465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.434 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds