Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00276 * 2 1 4 4 H 1.48496 * 109.47345 * 270.00374 * 3 2 1 5 5 H 1.48498 * 109.47294 * 30.00440 * 3 2 1 6 6 H 1.48505 * 109.46868 * 150.00306 * 3 2 1 7 7 C 1.37883 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99824 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99811 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00277 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00048 * 180.02562 * 11 10 9 14 14 N 1.46500 * 109.47381 * 179.97438 * 13 11 10 15 15 C 1.34773 * 119.99913 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00333 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99781 * 180.02562 * 15 14 13 18 18 C 1.50707 * 109.47247 * 180.02562 * 17 15 14 19 19 C 1.38238 * 119.99792 * 89.99994 * 18 17 15 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 15 24 24 H 0.97006 * 119.99407 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46641 * 60.00135 * 9 7 2 26 26 H 1.08996 * 109.47484 * 300.00476 * 9 7 2 27 27 H 0.97003 * 120.00401 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47516 * 59.99093 * 13 11 10 29 29 H 1.09004 * 109.46835 * 299.99723 * 13 11 10 30 30 H 0.96998 * 119.99656 * 0.02562 * 14 13 11 31 31 H 1.09005 * 109.47656 * 60.00320 * 17 15 14 32 32 H 1.09000 * 109.47265 * 299.99628 * 17 15 14 33 33 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 37 37 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 7 3.9997 -2.5755 -0.0010 11 6 5.3248 -2.8218 -0.0009 12 8 6.1129 -1.9001 -0.0014 13 6 5.8270 -4.2426 -0.0014 14 7 7.2920 -4.2427 -0.0018 15 6 7.9658 -5.4100 -0.0018 16 8 7.3593 -6.4603 -0.0009 17 6 9.4728 -5.4101 -0.0017 18 6 9.9751 -6.8310 -0.0022 19 6 10.2055 -7.4821 -1.1997 20 6 10.6668 -8.7852 -1.2002 21 6 10.8981 -9.4370 -0.0034 22 6 10.6626 -8.7878 1.1941 23 6 10.2058 -7.4830 1.1946 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8910 27 1 3.3693 -3.3128 -0.0010 28 1 5.4637 -4.7562 -0.8915 29 1 5.4636 -4.7567 0.8884 30 1 7.7770 -3.4027 -0.0014 31 1 9.8362 -4.8963 0.8884 32 1 9.8362 -4.8963 -0.8916 33 1 10.0252 -6.9726 -2.1348 34 1 10.8464 -9.2940 -2.1357 35 1 11.2589 -10.4550 -0.0039 36 1 10.8391 -9.2984 2.1291 37 1 10.0264 -6.9741 2.1301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345167566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = -56.477339 kcal Electronic energy + Delta-G solvation = -19690.963045 eV Core-core repulsion = 16432.781229 eV Total energy + Delta-G solvation = -3258.181815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27230 -39.31323 -38.51312 -34.74847 -34.17672 -33.10817 -32.45749 -31.07929 -29.42812 -27.99141 -26.23766 -22.78103 -22.38673 -21.73842 -20.43418 -20.13235 -17.99837 -17.03420 -16.80347 -16.30790 -16.03982 -15.58637 -15.33733 -15.32844 -14.78745 -14.43953 -14.15218 -13.60616 -13.54238 -13.24736 -13.08352 -12.82500 -12.61831 -12.40859 -12.25832 -11.90300 -11.34858 -11.20263 -11.11880 -10.83940 -10.07468 -10.03701 -9.59019 -9.50132 -9.19625 -9.08747 -8.91802 -8.85387 -8.32515 -6.27072 -4.30284 1.12898 1.23382 2.54003 2.96253 2.96806 3.21939 3.29073 3.35653 3.64021 3.90938 4.27495 4.40489 4.60349 4.80040 4.82310 4.90822 5.01945 5.07700 5.16432 5.21841 5.31632 5.40279 5.44554 5.44746 5.79253 5.84283 6.24579 6.26091 6.31791 6.38470 6.68259 6.80512 6.96106 7.02935 7.28187 7.44273 7.97669 8.14062 8.38157 8.61032 8.75187 9.31743 10.84742 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.055121 B = 0.002553 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.852702 B =10965.836529 C =11158.597954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.697 5.697 11 C 0.495 3.505 12 O -0.558 6.558 13 C 0.099 3.901 14 N -0.716 5.716 15 C 0.515 3.485 16 O -0.535 6.535 17 C -0.103 4.103 18 C -0.064 4.064 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.105 4.105 24 H 0.268 0.732 25 H 0.027 0.973 26 H 0.023 0.977 27 H 0.401 0.599 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.412 0.588 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.629 -14.497 0.020 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.345 5.345 11 C 0.280 3.720 12 O -0.439 6.439 13 C -0.029 4.029 14 N -0.372 5.372 15 C 0.301 3.699 16 O -0.412 6.412 17 C -0.142 4.142 18 C -0.065 4.065 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.123 4.123 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.235 0.765 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.250 0.750 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.526 -14.435 0.023 25.917 hybrid contribution 0.044 0.967 -0.022 0.969 sum 21.570 -13.467 0.001 25.429 Atomic orbital electron populations 1.69883 1.06217 1.27507 1.49086 1.24807 0.94818 0.99207 0.93816 0.86801 0.80510 0.83208 0.79046 1.19825 1.20840 1.18554 1.21074 0.88374 0.95347 1.53667 0.90118 1.19550 0.95447 0.78203 0.96967 1.46136 1.05371 1.11549 1.71457 1.20402 0.83744 0.90346 0.77538 1.90637 1.55419 1.45966 1.51833 1.21104 0.81639 0.95519 1.04614 1.45736 1.06402 1.09629 1.75399 1.20493 0.89748 0.83416 0.76270 1.90737 1.70200 1.31206 1.49015 1.20669 0.92223 0.95688 1.05655 1.19285 0.98862 0.94647 0.93674 1.21002 0.98872 0.95068 0.97392 1.21101 0.99772 0.94833 0.98109 1.21139 1.00450 0.99791 0.92677 1.21102 0.99777 0.94824 0.98105 1.21001 0.98891 0.95040 0.97399 0.92175 0.95487 0.95933 0.76527 0.88592 0.88592 0.75016 0.87686 0.87697 0.86186 0.86117 0.86245 0.86115 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.55 -14.62 9.83 -34.44 -0.34 -14.96 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.20 4.50 -5.20 -0.02 5.17 16 10 N -0.70 -13.29 5.55 -61.48 -0.34 -13.63 16 11 C 0.50 8.64 7.90 -10.99 -0.09 8.56 16 12 O -0.56 -11.34 15.67 5.56 0.09 -11.26 16 13 C 0.10 1.34 6.15 -5.20 -0.03 1.31 16 14 N -0.72 -8.92 5.53 -61.47 -0.34 -9.26 16 15 C 0.51 6.38 7.82 -10.99 -0.09 6.29 16 16 O -0.54 -8.57 16.03 5.55 0.09 -8.49 16 17 C -0.10 -0.91 5.83 -29.03 -0.17 -1.07 16 18 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 19 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 27 H 0.40 6.72 8.32 -40.82 -0.34 6.38 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.41 4.86 7.44 -40.82 -0.30 4.55 16 31 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -33.47 325.80 -7.53 -41.00 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.79 Total: 6.78 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.25 Total: -1.05 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.09 Total: -48.15 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.47 -7.53 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345167566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.473 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds