Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99799 * 2 1 4 4 H 1.48501 * 109.47229 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47340 * 119.99862 * 3 2 1 6 6 H 1.48505 * 109.46728 * 239.99829 * 3 2 1 7 7 C 1.37877 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99620 * 186.55935 * 7 2 1 9 9 C 1.50698 * 119.99983 * 6.55933 * 7 2 1 10 10 H 1.08997 * 109.46863 * 30.07987 * 9 7 2 11 11 C 1.53001 * 109.46901 * 150.08139 * 9 7 2 12 12 C 1.50697 * 109.47066 * 294.05498 * 11 9 7 13 13 O 1.21284 * 120.00111 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99804 * 180.02562 * 12 11 9 15 15 C 1.46506 * 119.99707 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46523 * 179.97438 * 15 14 12 17 17 N 1.34783 * 119.99638 * 180.02562 * 16 15 14 18 18 O 1.21271 * 120.00754 * 359.97438 * 16 15 14 19 19 C 1.50704 * 109.46907 * 270.08117 * 9 7 2 20 20 C 1.38232 * 120.00156 * 304.30300 * 19 9 7 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38243 * 119.99751 * 0.39675 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85625 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 0.96997 * 119.99910 * 174.72810 * 1 2 3 26 26 H 1.08997 * 109.47176 * 54.05869 * 11 9 7 27 27 H 1.09004 * 109.46355 * 174.05861 * 11 9 7 28 28 H 0.97001 * 120.00039 * 359.97438 * 14 12 11 29 29 H 1.08999 * 109.46806 * 299.99414 * 15 14 12 30 30 H 1.08992 * 109.46983 * 59.99783 * 15 14 12 31 31 H 0.96997 * 119.99626 * 359.97438 * 17 16 15 32 32 H 0.96997 * 120.00012 * 180.02562 * 17 16 15 33 33 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 35 35 H 1.08002 * 119.99679 * 179.83680 * 22 21 20 36 36 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0793 -1.1969 0.1074 9 6 1.2585 -2.4949 -0.1480 10 1 0.3620 -2.3333 -0.7465 11 6 2.1564 -3.5215 -0.8413 12 6 2.4282 -3.0773 -2.2555 13 8 1.9510 -2.0414 -2.6680 14 7 3.2014 -3.8312 -3.0618 15 6 3.4651 -3.3997 -4.4367 16 6 4.3497 -4.4108 -5.1196 17 7 4.7263 -4.2212 -6.3997 18 8 4.7235 -5.3947 -4.5170 19 6 0.8675 -3.0080 1.2140 20 6 1.8341 -3.2030 2.1828 21 6 1.4750 -3.6699 3.4333 22 6 0.1503 -3.9498 3.7125 23 6 -0.8156 -3.7598 2.7419 24 6 -0.4569 -3.2892 1.4927 25 1 -0.4850 -0.8365 -0.0772 26 1 3.0984 -3.6051 -0.2994 27 1 1.6574 -4.4905 -0.8544 28 1 3.5833 -4.6596 -2.7317 29 1 2.5229 -3.3162 -4.9783 30 1 3.9640 -2.4307 -4.4240 31 1 4.4277 -3.4341 -6.8815 32 1 5.2954 -4.8721 -6.8394 33 1 2.8695 -2.9879 1.9635 34 1 2.2297 -3.8187 4.1915 35 1 -0.1299 -4.3172 4.6887 36 1 -1.8504 -3.9789 2.9599 37 1 -1.2116 -3.1404 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354103886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = -60.642848 kcal Electronic energy + Delta-G solvation = -20866.852775 eV Core-core repulsion = 17608.490330 eV Total energy + Delta-G solvation = -3258.362445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95857 -38.89487 -38.14858 -34.47886 -33.97300 -33.76464 -31.33723 -30.08800 -29.31757 -27.48159 -24.76411 -22.86335 -21.66639 -20.98178 -20.25251 -19.55834 -17.93493 -17.11051 -16.67561 -16.07219 -15.73591 -15.62260 -15.23298 -14.62457 -14.15355 -13.97213 -13.65467 -13.55866 -13.06180 -12.82152 -12.56637 -12.29549 -12.16487 -11.83171 -11.43705 -10.91411 -10.70020 -10.40974 -10.30225 -10.11284 -10.03497 -10.01491 -9.63839 -9.11045 -8.73795 -8.60051 -8.25621 -8.11492 -7.61449 -6.22171 -3.89574 2.21599 2.27112 2.35225 3.06419 3.42884 3.50534 3.55331 3.71089 3.79501 4.62074 4.63822 4.69013 5.31238 5.35403 5.47987 5.61915 5.65725 5.74915 5.79110 6.03331 6.11306 6.19349 6.34116 6.44204 6.45663 6.66588 6.73143 6.81305 6.95392 7.03045 7.22062 7.24877 7.40346 7.74068 7.88162 7.92815 8.02112 8.24435 8.52138 8.94879 8.99737 9.79665 11.18137 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.005457 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.851533 B = 5130.175181 C = 6476.211207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 1.063 2.937 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.568 4.568 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.052 0.948 11 C -0.116 4.116 12 C 0.517 3.483 13 O -0.501 6.501 14 N -0.739 5.739 15 C 0.101 3.899 16 C 0.515 3.485 17 N -0.853 5.853 18 O -0.542 6.542 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.270 0.730 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.405 0.595 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.405 0.595 32 H 0.403 0.597 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -8.870 -6.965 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.892 3.108 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.605 4.605 8 H 0.064 0.936 9 C 0.053 3.947 10 H 0.070 0.930 11 C -0.156 4.156 12 C 0.304 3.696 13 O -0.372 6.372 14 N -0.398 5.398 15 C -0.027 4.027 16 C 0.300 3.700 17 N -0.417 5.417 18 O -0.418 6.418 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.241 0.759 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.234 0.766 32 H 0.234 0.766 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.506 -6.991 -6.646 11.107 hybrid contribution 0.575 -1.817 -0.377 1.942 sum 6.081 -8.807 -7.023 12.801 Atomic orbital electron populations 1.70757 1.06859 1.31134 1.45374 1.25582 0.96439 1.02200 0.93155 0.83637 0.75036 0.75893 0.76193 1.20970 1.21768 1.21573 1.21535 0.93841 0.90605 1.54569 0.93642 1.17875 0.96126 0.92926 0.87797 0.93039 1.21681 1.02265 0.99953 0.91717 1.20907 0.77422 0.83583 0.87723 1.90748 1.48839 1.22481 1.75167 1.45970 1.54828 1.27793 1.11257 1.20927 0.99458 0.96832 0.85475 1.20763 0.80300 0.86845 0.82118 1.43761 1.55113 1.28898 1.13932 1.90731 1.56029 1.30390 1.64671 1.20804 0.92304 0.91045 0.98960 1.20922 0.99716 0.99133 0.92810 1.21013 0.95807 1.01055 0.96882 1.20826 0.93556 1.04080 0.98661 1.20960 0.98348 1.00885 0.94083 1.21061 0.96438 1.00613 0.96687 0.91874 0.90066 0.91440 0.75857 0.88752 0.88590 0.76649 0.76623 0.86715 0.87449 0.87596 0.87474 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 13.63 55.43 0.76 -26.79 16 2 C 0.03 0.91 5.45 -17.82 -0.10 0.82 16 3 Si 1.06 26.14 29.91 -169.99 -5.08 21.05 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.57 -15.42 6.40 -34.44 -0.22 -15.64 16 8 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 9 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 10 H 0.05 1.38 6.23 -51.93 -0.32 1.06 16 11 C -0.12 -2.29 4.94 -27.88 -0.14 -2.43 16 12 C 0.52 10.34 7.58 -10.99 -0.08 10.26 16 13 O -0.50 -12.20 15.02 5.55 0.08 -12.12 16 14 N -0.74 -11.62 5.53 -61.47 -0.34 -11.96 16 15 C 0.10 1.28 6.15 -5.19 -0.03 1.25 16 16 C 0.51 5.84 8.17 -10.98 -0.09 5.75 16 17 N -0.85 -5.77 8.87 31.22 0.28 -5.49 16 18 O -0.54 -8.12 16.50 5.57 0.09 -8.03 16 19 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 20 C -0.11 -2.22 8.88 -39.59 -0.35 -2.58 16 21 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 24 C -0.13 -2.73 9.67 -39.59 -0.38 -3.12 16 25 H 0.27 8.12 6.68 -40.82 -0.27 7.85 16 26 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.40 5.92 7.44 -40.82 -0.30 5.61 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 32 H 0.40 2.24 8.93 -40.82 -0.36 1.87 16 33 H 0.11 2.31 7.80 -52.48 -0.41 1.90 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -35.49 322.39 -7.17 -42.66 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.60 Total: 9.65 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.21 Total: -13.83 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.69 Total: -44.24 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.15 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.49 -7.17 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354103886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.986 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds