Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99799 * 2 1 4 4 H 1.48501 * 109.47229 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47340 * 119.99862 * 3 2 1 6 6 H 1.48505 * 109.46728 * 239.99829 * 3 2 1 7 7 C 1.37877 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99620 * 186.55935 * 7 2 1 9 9 C 1.50698 * 119.99983 * 6.55933 * 7 2 1 10 10 H 1.08997 * 109.46863 * 30.07987 * 9 7 2 11 11 C 1.53001 * 109.46901 * 150.08139 * 9 7 2 12 12 C 1.50697 * 109.47066 * 294.05498 * 11 9 7 13 13 O 1.21284 * 120.00111 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99804 * 180.02562 * 12 11 9 15 15 C 1.46506 * 119.99707 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46523 * 179.97438 * 15 14 12 17 17 N 1.34783 * 119.99638 * 180.02562 * 16 15 14 18 18 O 1.21271 * 120.00754 * 359.97438 * 16 15 14 19 19 C 1.50704 * 109.46907 * 270.08117 * 9 7 2 20 20 C 1.38232 * 120.00156 * 304.30300 * 19 9 7 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38243 * 119.99751 * 0.39675 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85625 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 0.96997 * 119.99910 * 174.72810 * 1 2 3 26 26 H 1.08997 * 109.47176 * 54.05869 * 11 9 7 27 27 H 1.09004 * 109.46355 * 174.05861 * 11 9 7 28 28 H 0.97001 * 120.00039 * 359.97438 * 14 12 11 29 29 H 1.08999 * 109.46806 * 299.99414 * 15 14 12 30 30 H 1.08992 * 109.46983 * 59.99783 * 15 14 12 31 31 H 0.96997 * 119.99626 * 359.97438 * 17 16 15 32 32 H 0.96997 * 120.00012 * 180.02562 * 17 16 15 33 33 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 35 35 H 1.08002 * 119.99679 * 179.83680 * 22 21 20 36 36 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0793 -1.1969 0.1074 9 6 1.2585 -2.4949 -0.1480 10 1 0.3620 -2.3333 -0.7465 11 6 2.1564 -3.5215 -0.8413 12 6 2.4282 -3.0773 -2.2555 13 8 1.9510 -2.0414 -2.6680 14 7 3.2014 -3.8312 -3.0618 15 6 3.4651 -3.3997 -4.4367 16 6 4.3497 -4.4108 -5.1196 17 7 4.7263 -4.2212 -6.3997 18 8 4.7235 -5.3947 -4.5170 19 6 0.8675 -3.0080 1.2140 20 6 1.8341 -3.2030 2.1828 21 6 1.4750 -3.6699 3.4333 22 6 0.1503 -3.9498 3.7125 23 6 -0.8156 -3.7598 2.7419 24 6 -0.4569 -3.2892 1.4927 25 1 -0.4850 -0.8365 -0.0772 26 1 3.0984 -3.6051 -0.2994 27 1 1.6574 -4.4905 -0.8544 28 1 3.5833 -4.6596 -2.7317 29 1 2.5229 -3.3162 -4.9783 30 1 3.9640 -2.4307 -4.4240 31 1 4.4277 -3.4341 -6.8815 32 1 5.2954 -4.8721 -6.8394 33 1 2.8695 -2.9879 1.9635 34 1 2.2297 -3.8187 4.1915 35 1 -0.1299 -4.3172 4.6887 36 1 -1.8504 -3.9789 2.9599 37 1 -1.2116 -3.1404 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354103886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = -87.876089 kcal Electronic energy + Delta-G solvation = -20868.033697 eV Core-core repulsion = 17608.490330 eV Total energy + Delta-G solvation = -3259.543367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15260 -40.32247 -39.64370 -36.20721 -35.28354 -34.78242 -33.27889 -31.60113 -30.79388 -28.81825 -26.64576 -24.59777 -23.19971 -22.04986 -21.67325 -21.17671 -19.06337 -18.56969 -18.17796 -17.45597 -16.94353 -16.86513 -16.56951 -16.14493 -15.66600 -15.62442 -15.45555 -14.82717 -14.64251 -14.18319 -14.02909 -13.96356 -13.66902 -13.43887 -13.12599 -12.66841 -12.57029 -12.06454 -11.93296 -11.72069 -11.47209 -11.28381 -10.81887 -10.77657 -10.61579 -10.32189 -10.09427 -9.63345 -9.26330 -8.43076 -6.08940 0.68695 0.74743 1.43371 1.50452 1.60833 1.76403 1.83989 2.01622 2.63426 2.67818 3.11688 3.40155 3.84336 4.08585 4.14211 4.28559 4.30343 4.31338 4.39775 4.45045 4.49968 4.64073 4.83615 4.87474 5.08876 5.23986 5.39523 5.41511 5.44807 5.75316 5.80071 5.83227 5.96038 6.25413 6.30173 6.32019 6.40521 6.60970 6.80073 7.19106 7.42937 7.66783 8.97179 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.005457 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.851533 B = 5130.175181 C = 6476.211207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.024 4.024 3 Si 1.100 2.900 4 H -0.289 1.289 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.559 4.559 8 H 0.039 0.961 9 C 0.074 3.926 10 H 0.011 0.989 11 C -0.113 4.113 12 C 0.517 3.483 13 O -0.553 6.553 14 N -0.724 5.724 15 C 0.095 3.905 16 C 0.522 3.478 17 N -0.826 5.826 18 O -0.581 6.581 19 C -0.055 4.055 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.152 4.152 25 H 0.257 0.743 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.413 0.587 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.421 0.579 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -10.062 -6.143 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.223 4.223 3 Si 0.925 3.075 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.597 4.597 8 H 0.058 0.942 9 C 0.055 3.945 10 H 0.029 0.971 11 C -0.153 4.153 12 C 0.305 3.695 13 O -0.429 6.429 14 N -0.382 5.382 15 C -0.032 4.032 16 C 0.306 3.694 17 N -0.390 5.390 18 O -0.461 6.461 19 C -0.055 4.055 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.251 0.749 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.247 0.753 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.881 -8.220 -5.878 12.225 hybrid contribution 0.183 -1.573 -0.669 1.719 sum 7.064 -9.793 -6.547 13.735 Atomic orbital electron populations 1.70852 1.07803 1.30421 1.48822 1.26762 0.96612 1.05598 0.93314 0.83154 0.74360 0.72784 0.77232 1.21479 1.19589 1.20757 1.21787 0.93552 0.92011 1.52310 0.94243 1.17706 0.94794 0.93120 0.88923 0.97098 1.21591 1.02242 0.99778 0.91678 1.20899 0.77377 0.83129 0.88114 1.90729 1.51218 1.24812 1.76157 1.45743 1.53043 1.27188 1.12186 1.21122 1.00557 0.97559 0.83966 1.20438 0.79960 0.85829 0.83162 1.43518 1.53787 1.29472 1.12270 1.90724 1.57683 1.31761 1.65899 1.20619 0.93412 0.93259 0.98252 1.21010 0.99268 1.00169 0.93758 1.21406 0.97192 0.99327 0.96382 1.21310 0.92873 1.02228 0.99888 1.21302 1.00306 0.99686 0.93022 1.21132 0.95839 1.02094 0.98017 0.93198 0.88717 0.89112 0.74944 0.87774 0.88119 0.74731 0.75300 0.86883 0.84021 0.83577 0.84686 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.63 21.45 0.29 -59.37 16 2 C -0.02 -1.44 5.45 84.65 0.46 -0.98 16 3 Si 1.10 53.53 29.91 68.60 2.05 55.58 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.56 -31.16 6.40 25.60 0.16 -30.99 16 8 H 0.04 2.18 7.82 -2.91 -0.02 2.16 16 9 C 0.07 3.67 1.31 -12.29 -0.02 3.66 16 10 H 0.01 0.62 6.23 -2.39 -0.01 0.61 16 11 C -0.11 -4.52 4.94 29.85 0.15 -4.37 16 12 C 0.52 21.05 7.58 87.66 0.66 21.72 16 13 O -0.55 -27.90 15.02 -3.04 -0.05 -27.94 16 14 N -0.72 -22.49 5.53 -466.79 -2.58 -25.07 16 15 C 0.10 2.33 6.15 85.63 0.53 2.86 16 16 C 0.52 11.03 8.17 87.66 0.72 11.75 16 17 N -0.83 -9.23 8.87 -173.53 -1.54 -10.77 16 18 O -0.58 -16.74 16.50 -3.00 -0.05 -16.79 16 19 C -0.05 -2.48 4.77 -19.87 -0.09 -2.58 16 20 C -0.12 -5.00 8.88 22.27 0.20 -4.81 16 21 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 22 C -0.15 -4.58 10.05 22.27 0.22 -4.35 16 23 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 24 C -0.15 -6.53 9.67 22.27 0.22 -6.31 16 25 H 0.26 16.46 6.68 -92.71 -0.62 15.84 16 26 H 0.09 3.51 7.87 -2.39 -0.02 3.49 16 27 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 28 H 0.41 11.74 7.44 -92.71 -0.69 11.05 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.42 2.26 8.83 -92.71 -0.82 1.45 16 32 H 0.41 3.54 8.93 -92.71 -0.83 2.71 16 33 H 0.11 4.48 7.80 -2.91 -0.02 4.46 16 34 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.10 4.26 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -80.02 322.39 0.72 -79.30 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -1.07 Total: 27.63 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.65 Total: -22.57 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.83 Total: -95.21 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.10 Total: -44.73 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.58 kcal Total: -80.02 0.72 -79.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354103886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.578 kcal (2) G-P(sol) polarization free energy of solvation -80.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds