Wall clock time and date at job start Mon Mar 30 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99628 * 2 1 4 4 H 1.48502 * 109.47591 * 270.00615 * 3 2 1 5 5 H 1.48505 * 109.46984 * 30.00661 * 3 2 1 6 6 H 1.48504 * 109.46982 * 150.00358 * 3 2 1 7 7 C 1.37875 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47013 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47332 * 180.02562 * 10 9 7 12 12 C 1.81399 * 103.00251 * 174.85775 * 11 10 9 13 13 H 1.09005 * 109.06790 * 308.64005 * 12 11 10 14 14 C 1.52777 * 109.08373 * 67.69409 * 12 11 10 15 15 C 1.52983 * 108.50420 * 211.99018 * 14 12 11 16 16 C 1.52567 * 109.64559 * 299.12943 * 15 14 12 17 17 C 1.53089 * 107.82757 * 326.89959 * 16 15 14 18 18 C 1.50583 * 110.88365 * 93.25509 * 17 16 15 19 19 C 1.39010 * 117.44489 * 130.53643 * 18 17 16 20 20 C 1.37917 * 120.54134 * 177.42529 * 19 18 17 21 21 C 1.38265 * 119.69477 * 0.07110 * 20 19 18 22 22 C 1.37881 * 119.77430 * 0.55026 * 21 20 19 23 23 C 1.37301 * 122.72672 * 309.01473 * 18 17 16 24 24 H 0.96998 * 119.99831 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47460 * 60.00371 * 9 7 2 26 26 H 1.09000 * 109.47753 * 299.99972 * 9 7 2 27 27 H 1.09000 * 109.47563 * 59.99655 * 10 9 7 28 28 H 1.09006 * 109.46840 * 299.99701 * 10 9 7 29 29 H 1.09001 * 109.62441 * 92.29010 * 14 12 11 30 30 H 1.08993 * 109.63046 * 331.69755 * 14 12 11 31 31 H 1.09002 * 109.43786 * 59.17761 * 15 14 12 32 32 H 1.09007 * 109.43190 * 179.08532 * 15 14 12 33 33 H 1.08994 * 109.79249 * 86.51772 * 16 15 14 34 34 H 1.09004 * 109.79380 * 207.36158 * 16 15 14 35 35 H 1.08998 * 109.19848 * 332.90035 * 17 16 15 36 36 H 1.08999 * 109.21431 * 213.61524 * 17 16 15 37 37 H 1.08000 * 119.73154 * 357.40329 * 19 18 17 38 38 H 1.07999 * 120.15197 * 180.10123 * 20 19 18 39 39 H 1.08000 * 120.11570 * 180.56554 * 21 20 19 40 40 H 1.07996 * 119.69791 * 179.83068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 6 2.6591 -6.4665 -0.1596 13 1 3.2944 -6.2016 -1.0049 14 6 3.4993 -6.4654 1.1164 15 6 4.9419 -6.8172 0.7482 16 6 4.9867 -8.2071 0.1206 17 6 3.8963 -9.0548 0.7809 18 6 2.6189 -9.0007 -0.0147 19 6 2.0017 -10.2086 -0.3185 20 6 0.8018 -10.2311 -0.9981 21 6 0.2093 -9.0421 -1.3814 22 6 0.8277 -7.8443 -1.0914 23 6 2.0421 -7.8202 -0.4133 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8722 -3.6043 0.8894 28 1 2.8721 -3.6042 -0.8906 29 1 3.1080 -7.2068 1.8130 30 1 3.4688 -5.4766 1.5740 31 1 5.3233 -6.0852 0.0362 32 1 5.5589 -6.8047 1.6467 33 1 4.8003 -8.1345 -0.9508 34 1 5.9625 -8.6601 0.2964 35 1 3.7085 -8.6776 1.7861 36 1 4.2351 -10.0889 0.8445 37 1 2.4657 -11.1371 -0.0202 38 1 0.3270 -11.1731 -1.2295 39 1 -0.7348 -9.0514 -1.9058 40 1 0.3652 -6.9164 -1.3938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359030115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:59 Heat of formation + Delta-G solvation = -1.914695 kcal Electronic energy + Delta-G solvation = -18726.941712 eV Core-core repulsion = 16017.419125 eV Total energy + Delta-G solvation = -2709.522587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16069 -36.79711 -33.67876 -32.96448 -31.27811 -30.84939 -29.52643 -25.69631 -25.12123 -24.66743 -22.29420 -21.27335 -20.33191 -19.80839 -16.63987 -16.48668 -15.98729 -15.81813 -15.26551 -14.52466 -14.36453 -14.20366 -13.96363 -13.54935 -13.38787 -12.97553 -12.87305 -12.64371 -12.27568 -12.04566 -11.69574 -11.49442 -11.09382 -11.01111 -10.84497 -10.75686 -10.73350 -10.57918 -10.47453 -10.12348 -9.62935 -9.40287 -9.03270 -8.70366 -8.53421 -8.41538 -7.10619 -6.05532 -4.10029 1.31180 1.41611 2.22712 3.23458 3.29126 3.35714 3.38775 3.79273 4.42053 4.53683 4.58401 4.77844 4.86604 4.97184 5.02775 5.11158 5.22217 5.30009 5.34493 5.37681 5.53239 5.64496 5.68617 5.74981 5.83446 5.92961 5.96713 6.03300 6.11927 6.16287 6.16967 6.23540 6.35048 6.49921 6.58464 6.67199 6.76487 7.04191 7.57409 7.66455 7.90955 8.28418 8.95012 9.53856 11.05255 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003962 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.887111 B = 7066.159229 C = 7918.298284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.064 4.064 11 S -0.273 6.273 12 C -0.016 4.016 13 H 0.091 0.909 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.086 4.086 18 C -0.070 4.070 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.055 4.055 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -20.413 -0.101 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.211 4.211 11 S -0.041 6.041 12 C -0.145 4.145 13 H 0.109 0.891 14 C -0.158 4.158 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.123 4.123 18 C -0.071 4.071 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.126 4.126 23 C -0.056 4.056 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.727 -20.432 -0.024 21.220 hybrid contribution 1.620 1.145 -0.185 1.993 sum 7.347 -19.287 -0.209 20.640 Atomic orbital electron populations 1.69975 1.06067 1.26835 1.50059 1.25008 0.94882 0.99271 0.95069 0.86535 0.79778 0.83177 0.78168 1.20565 1.21099 1.19820 1.21100 0.92979 0.90312 1.51682 0.92505 1.18892 0.93396 0.89284 0.98468 1.23748 1.01479 0.92898 1.03023 1.86929 1.17288 1.02880 1.96987 1.22020 0.97723 0.93793 1.00929 0.89063 1.22122 0.94079 1.03180 0.96423 1.21671 0.96635 0.96888 1.00922 1.21553 0.98000 0.95430 1.00397 1.20754 0.92032 1.00374 0.99150 1.19481 0.96653 0.92112 0.98847 1.21149 0.96087 0.96941 1.00264 1.21068 0.95919 0.98045 0.99031 1.21088 1.00075 0.92437 1.00666 1.21648 0.94630 0.99073 0.97256 1.19171 0.95177 0.92348 0.98861 0.92797 0.95568 0.95626 0.91390 0.91561 0.90124 0.90557 0.91781 0.91654 0.91654 0.91567 0.89855 0.91516 0.86392 0.86355 0.86092 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 10 C -0.06 -1.34 5.58 37.16 0.21 -1.13 16 11 S -0.27 -5.04 18.69 -107.50 -2.01 -7.05 16 12 C -0.02 -0.24 2.29 -27.89 -0.06 -0.30 16 13 H 0.09 1.34 7.70 -51.91 -0.40 0.94 16 14 C -0.12 -1.54 5.08 -26.85 -0.14 -1.67 16 15 C -0.12 -1.29 5.64 -26.96 -0.15 -1.44 16 16 C -0.12 -1.11 5.75 -26.91 -0.15 -1.26 16 17 C -0.09 -0.84 5.18 -27.89 -0.14 -0.98 16 18 C -0.07 -0.83 5.13 -104.73 -0.54 -1.37 16 19 C -0.13 -1.37 9.56 -39.41 -0.38 -1.75 16 20 C -0.12 -1.33 10.05 -39.69 -0.40 -1.73 16 21 C -0.12 -1.52 10.05 -39.70 -0.40 -1.91 16 22 C -0.11 -1.53 8.96 -39.39 -0.35 -1.88 16 23 C -0.05 -0.76 5.35 -104.53 -0.56 -1.32 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.37 7.14 -51.92 -0.37 1.00 16 28 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.08 1.01 5.38 -51.93 -0.28 0.73 16 30 H 0.08 1.09 6.50 -51.93 -0.34 0.76 16 31 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 7.80 -51.93 -0.40 0.28 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.82 5.77 -51.93 -0.30 0.52 16 36 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 37 H 0.12 1.00 7.81 -52.49 -0.41 0.59 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.14 2.16 6.31 -52.38 -0.33 1.83 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -29.86 324.03 -11.18 -41.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.15 Total: -0.09 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -3.62 Total: -29.21 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.01 Total: -7.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.86 -11.18 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359030115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.124 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds