Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48501 * 109.46802 * 239.99681 * 3 2 1 5 5 H 1.48491 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47209 * 119.99864 * 3 2 1 7 7 C 1.39903 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00441 * 175.54680 * 7 2 1 9 9 C 1.41155 * 120.00289 * 355.54971 * 7 2 1 10 10 C 1.40875 * 120.16253 * 35.01109 * 9 7 2 11 11 C 1.36372 * 119.82611 * 180.24856 * 10 9 7 12 12 C 1.39477 * 120.17116 * 359.48235 * 11 10 9 13 13 N 1.39236 * 119.83327 * 180.29111 * 12 11 10 14 14 C 1.34771 * 120.00301 * 324.71945 * 13 12 11 15 15 O 1.21278 * 120.00288 * 4.28096 * 14 13 12 16 16 C 1.50707 * 120.00046 * 184.29116 * 14 13 12 17 17 C 1.53001 * 109.47128 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46777 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.46778 * 179.97438 * 18 17 16 20 20 N 1.34777 * 120.00188 * 180.02562 * 19 18 17 21 21 O 1.21280 * 119.99892 * 359.97438 * 19 18 17 22 22 C 1.39487 * 120.33091 * 0.27505 * 12 11 10 23 23 C 1.36366 * 120.16854 * 359.97438 * 22 12 11 24 24 H 0.97003 * 119.99620 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08383 * 0.03287 * 10 9 7 26 26 H 1.08000 * 119.90981 * 179.75896 * 11 10 9 27 27 H 0.97011 * 119.99503 * 144.71216 * 13 12 11 28 28 H 1.08996 * 109.46522 * 299.99594 * 16 14 13 29 29 H 1.09000 * 109.47057 * 59.99695 * 16 14 13 30 30 H 1.09000 * 109.46873 * 299.99912 * 17 16 14 31 31 H 1.09007 * 109.46918 * 59.99715 * 17 16 14 32 32 H 1.08997 * 109.47069 * 299.99522 * 18 17 16 33 33 H 1.09000 * 109.47047 * 60.00353 * 18 17 16 34 34 H 0.97006 * 119.99348 * 0.02562 * 20 19 18 35 35 H 0.96997 * 119.99994 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.91045 * 179.97438 * 22 12 11 37 37 H 1.08004 * 120.08698 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6962 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2132 -0.0721 9 6 1.3056 -2.4322 0.0959 10 6 0.0437 -2.5721 -0.5144 11 6 -0.6314 -3.7527 -0.4136 12 6 -0.0708 -4.8235 0.2823 13 7 -0.7635 -6.0277 0.3757 14 6 -2.1075 -6.0260 0.4764 15 8 -2.7194 -4.9812 0.4077 16 6 -2.8499 -7.3224 0.6747 17 6 -4.3518 -7.0425 0.7573 18 6 -5.1055 -8.3588 0.9580 19 6 -6.5849 -8.0830 1.0400 20 7 -7.4512 -9.1001 1.2171 21 8 -6.9957 -6.9456 0.9477 22 6 1.1805 -4.6942 0.8850 23 6 1.8653 -3.5182 0.7971 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3895 -1.7453 -1.0578 26 1 -1.6007 -3.8601 -0.8777 27 1 -0.2787 -6.8680 0.3681 28 1 -2.6497 -7.9878 -0.1651 29 1 -2.5171 -7.7940 1.5993 30 1 -4.5517 -6.3772 1.5973 31 1 -4.6849 -6.5707 -0.1671 32 1 -4.9056 -9.0236 0.1177 33 1 -4.7725 -8.8309 1.8823 34 1 -7.1224 -10.0097 1.2921 35 1 -8.4034 -8.9226 1.2695 36 1 1.6080 -5.5277 1.4226 37 1 2.8342 -3.4197 1.2639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361915913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -99.163256 kcal Electronic energy + Delta-G solvation = -20005.489480 eV Core-core repulsion = 16745.456665 eV Total energy + Delta-G solvation = -3260.032816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.21542 -40.42735 -39.07431 -36.20269 -35.19024 -34.65874 -34.54393 -31.47512 -31.02219 -29.38477 -26.74568 -24.20912 -23.16078 -22.42743 -21.17580 -20.94828 -19.22393 -18.62766 -18.08838 -17.52373 -17.47145 -17.11685 -16.89385 -16.07555 -15.75568 -15.31469 -15.05406 -14.62338 -14.42778 -14.37445 -13.95824 -13.64107 -13.37502 -12.95598 -12.85374 -12.75384 -12.61632 -12.40174 -12.30568 -11.76577 -11.70496 -11.67632 -11.19403 -11.03441 -10.70474 -10.61015 -10.41453 -9.44898 -8.72578 -8.49204 -6.32677 0.83555 1.13353 1.37726 1.46829 1.51405 1.71312 1.87898 2.23217 2.37744 2.76796 2.83442 3.68605 3.77907 4.04485 4.11188 4.12139 4.45090 4.48922 4.66687 4.67831 4.73516 4.84145 5.02872 5.13240 5.19809 5.20944 5.35065 5.42991 5.47148 5.72040 5.89213 5.94891 6.10050 6.16137 6.36711 6.54898 6.71529 6.80342 6.96142 7.03716 7.44021 7.52171 8.43630 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033208 B = 0.003043 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.979633 B = 9200.652319 C = 9921.886856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.497 4.497 8 H 0.081 0.919 9 C 0.063 3.937 10 C -0.171 4.171 11 C -0.113 4.113 12 C 0.022 3.978 13 N -0.645 5.645 14 C 0.485 3.515 15 O -0.587 6.587 16 C -0.118 4.118 17 C -0.092 4.092 18 C -0.128 4.128 19 C 0.503 3.497 20 N -0.838 5.838 21 O -0.608 6.608 22 C -0.108 4.108 23 C -0.210 4.210 24 H 0.281 0.719 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.422 0.578 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.421 0.579 35 H 0.403 0.597 36 H 0.140 0.860 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -22.939 2.725 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.061 3.939 10 C -0.191 4.191 11 C -0.133 4.133 12 C -0.072 4.072 13 N -0.291 5.291 14 C 0.275 3.725 15 O -0.466 6.466 16 C -0.157 4.157 17 C -0.131 4.131 18 C -0.167 4.167 19 C 0.290 3.710 20 N -0.402 5.402 21 O -0.489 6.489 22 C -0.128 4.128 23 C -0.229 4.229 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.260 0.740 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.253 0.747 35 H 0.233 0.767 36 H 0.158 0.842 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.746 -21.355 2.614 22.547 hybrid contribution -0.156 0.783 -0.061 0.800 sum -6.902 -20.572 2.554 21.849 Atomic orbital electron populations 1.69930 1.09042 1.29811 1.39047 1.26898 0.95680 1.04893 0.91678 0.85100 0.78304 0.75174 0.80130 1.18037 1.19970 1.18218 1.19745 0.95010 0.91117 1.46923 0.90080 1.18072 0.92616 0.93402 0.89836 1.21177 0.98113 0.96327 1.03500 1.20672 0.98562 0.94310 0.99733 1.17399 0.95121 0.88166 1.06535 1.42974 1.06571 1.07558 1.72020 1.21932 0.82301 0.92849 0.75404 1.90739 1.68396 1.36448 1.51041 1.21685 0.93643 0.92843 1.07569 1.20991 0.93396 0.97033 1.01678 1.21682 0.88641 0.98665 1.07739 1.21393 0.91122 0.84394 0.74119 1.43761 1.10484 1.10636 1.75316 1.90791 1.81207 1.24697 1.52192 1.20472 0.94278 0.98111 0.99902 1.20984 1.01917 0.94774 1.05274 0.90858 0.88081 0.88946 0.73988 0.84770 0.84895 0.94257 0.94098 0.84854 0.84940 0.74698 0.76684 0.84186 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.31 10.61 21.82 0.23 -49.08 16 2 C 0.02 1.05 5.42 85.24 0.46 1.51 16 3 Si 0.99 40.99 29.56 68.60 2.03 43.02 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.50 -27.97 9.02 23.39 0.21 -27.76 16 8 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 9 C 0.06 3.58 5.55 -21.27 -0.12 3.46 16 10 C -0.17 -10.01 8.61 22.48 0.19 -9.82 16 11 C -0.11 -6.02 8.61 22.13 0.19 -5.83 16 12 C 0.02 0.95 6.31 38.57 0.24 1.19 16 13 N -0.65 -20.62 5.30 -303.11 -1.61 -22.23 16 14 C 0.49 16.22 7.66 87.66 0.67 16.89 16 15 O -0.59 -27.74 13.40 -3.02 -0.04 -27.78 16 16 C -0.12 -2.11 5.70 29.85 0.17 -1.94 16 17 C -0.09 -2.15 3.79 30.59 0.12 -2.04 16 18 C -0.13 -1.49 5.70 29.85 0.17 -1.32 16 19 C 0.50 9.53 8.10 87.66 0.71 10.25 16 20 N -0.84 -7.38 8.87 -173.53 -1.54 -8.92 16 21 O -0.61 -20.12 16.82 -3.03 -0.05 -20.17 16 22 C -0.11 -4.50 9.90 22.13 0.22 -4.28 16 23 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 24 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 25 H 0.10 6.37 6.15 -2.91 -0.02 6.36 16 26 H 0.09 5.13 6.22 -2.91 -0.02 5.11 16 27 H 0.42 8.80 8.82 -92.70 -0.82 7.99 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.21 8.06 -2.39 -0.02 1.19 16 31 H 0.04 1.24 8.06 -2.38 -0.02 1.22 16 32 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.42 0.12 8.83 -92.70 -0.82 -0.70 16 35 H 0.40 3.50 8.93 -92.71 -0.83 2.67 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -89.48 319.90 1.14 -88.33 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -1.33 Total: 26.45 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.46 Total: -29.62 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.92 Total: -80.23 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.09 Total: -47.95 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -89.48 1.14 -88.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361915913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.829 kcal (2) G-P(sol) polarization free energy of solvation -89.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds