Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.46810 * 149.99796 * 3 2 1 7 7 C 1.37872 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00132 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.49613 * 60.06250 * 9 7 2 11 11 C 1.53041 * 109.52507 * 180.14496 * 9 7 2 12 12 C 1.53033 * 109.53868 * 181.32991 * 11 9 7 13 13 C 1.53626 * 109.24394 * 298.51442 * 12 11 9 14 14 N 1.46927 * 108.54571 * 54.85385 * 13 12 11 15 15 C 1.34767 * 120.63121 * 126.36804 * 14 13 12 16 16 O 1.21521 * 120.00247 * 187.45057 * 15 14 13 17 17 C 1.48157 * 120.00342 * 7.45298 * 15 14 13 18 18 C 1.39168 * 119.69373 * 189.58271 * 17 15 14 19 19 C 1.38733 * 119.18389 * 179.97438 * 18 17 15 20 20 C 1.38376 * 118.56274 * 0.02562 * 19 18 17 21 21 C 1.39242 * 119.30474 * 0.27161 * 20 19 18 22 22 O 1.35668 * 119.61597 * 179.72717 * 21 20 19 23 23 N 1.31927 * 120.76373 * 359.40958 * 21 20 19 24 24 C 1.46925 * 118.73695 * 306.09833 * 14 13 12 25 25 H 0.97000 * 120.00072 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.45766 * 301.35297 * 11 9 7 27 27 H 1.09001 * 109.45750 * 61.32407 * 11 9 7 28 28 H 1.09008 * 109.49423 * 58.58620 * 12 11 9 29 29 H 1.08998 * 109.50169 * 178.68375 * 12 11 9 30 30 H 1.08994 * 109.73684 * 295.11793 * 13 12 11 31 31 H 1.09003 * 109.66430 * 174.54972 * 13 12 11 32 32 H 1.07997 * 120.40590 * 0.02562 * 18 17 15 33 33 H 1.08001 * 120.71955 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.34739 * 180.02562 * 20 19 18 35 35 H 0.96695 * 114.00180 * 89.99754 * 22 21 20 36 36 H 1.09000 * 109.58967 * 173.64746 * 24 14 13 37 37 H 1.09002 * 109.58507 * 293.92902 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6810 0.8915 11 6 4.0231 -2.6364 -0.0020 12 6 5.5531 -2.6369 0.0321 13 6 6.0877 -1.9319 -1.2238 14 7 5.4867 -0.5934 -1.2999 15 6 6.2627 0.5020 -1.4193 16 8 5.7669 1.6090 -1.3453 17 6 7.7204 0.3567 -1.6408 18 6 8.5443 1.4756 -1.5638 19 6 9.9078 1.3273 -1.7726 20 6 10.4010 0.0649 -2.0517 21 6 9.5200 -1.0112 -2.1201 22 8 9.9959 -2.2507 -2.3988 23 7 8.2286 -0.8404 -1.9109 24 6 4.0233 -0.4722 -1.2495 25 1 -0.4850 0.8400 0.0004 26 1 3.6401 -3.1593 0.8743 27 1 3.6800 -3.1413 -0.9050 28 1 5.8973 -2.1103 0.9223 29 1 5.9162 -3.6644 0.0534 30 1 5.8174 -2.5048 -2.1108 31 1 7.1722 -1.8425 -1.1606 32 1 8.1275 2.4472 -1.3436 33 1 10.5700 2.1789 -1.7192 34 1 11.4576 -0.0835 -2.2186 35 1 10.2496 -2.7596 -1.6168 36 1 3.7452 0.5807 -1.2032 37 1 3.5882 -0.9263 -2.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397610797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = -15.381348 kcal Electronic energy + Delta-G solvation = -21756.127957 eV Core-core repulsion = 18499.728198 eV Total energy + Delta-G solvation = -3256.399759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06431 -39.32484 -37.38740 -36.77845 -33.76464 -32.69883 -31.80203 -30.74693 -30.23661 -25.89160 -25.11832 -23.78107 -23.35810 -21.91211 -20.48477 -19.13978 -18.48259 -17.46006 -16.82076 -16.59371 -16.15886 -15.72814 -15.41372 -14.85001 -14.28834 -14.05190 -13.71497 -13.46547 -13.23185 -12.98790 -12.70161 -12.52822 -12.33184 -12.14662 -12.01658 -11.33182 -11.02047 -10.58590 -10.43632 -10.29854 -10.13267 -9.96872 -9.70309 -9.39873 -9.24866 -9.08514 -8.70181 -8.57249 -8.00413 -6.07685 -4.09038 0.41145 0.80490 2.69462 3.13956 3.39731 3.42751 3.50320 3.60553 3.64626 4.26479 4.45212 4.55837 4.65286 4.74105 5.02621 5.18666 5.24797 5.50625 5.56684 5.61665 5.75437 5.79980 6.02278 6.10843 6.17795 6.24983 6.39615 6.52935 6.61292 6.72483 6.81648 6.94912 7.14742 7.19363 7.41636 7.47978 7.74865 7.87506 8.41807 8.53887 8.95562 9.54074 11.04292 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.005781 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.183754 B = 4842.671488 C = 5726.960637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.074 3.926 14 N -0.580 5.580 15 C 0.554 3.446 16 O -0.538 6.538 17 C 0.116 3.884 18 C -0.124 4.124 19 C -0.063 4.063 20 C -0.171 4.171 21 C 0.303 3.697 22 O -0.479 6.479 23 N -0.465 5.465 24 C 0.099 3.901 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.393 -1.879 -2.599 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.048 4.048 14 N -0.310 5.310 15 C 0.340 3.660 16 O -0.416 6.416 17 C -0.021 4.021 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.192 4.192 21 C 0.122 3.878 22 O -0.286 6.286 23 N -0.187 5.187 24 C -0.021 4.021 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.259 0.741 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.304 -1.781 -3.194 22.602 hybrid contribution 0.930 1.296 0.376 1.639 sum 23.235 -0.485 -2.818 23.410 Atomic orbital electron populations 1.69894 1.06269 1.27112 1.50160 1.25045 0.94756 0.99103 0.94095 0.86991 0.79791 0.83408 0.78955 1.20046 1.22307 1.18587 1.20971 0.88218 0.94630 1.51520 0.90446 1.19472 0.96775 0.92337 0.92782 0.95165 1.21458 0.92489 0.98616 1.01369 1.22101 0.98168 0.99433 0.97829 1.23035 1.02322 0.81853 0.97596 1.48313 1.08084 1.06371 1.68237 1.17930 0.84539 0.85010 0.78550 1.90789 1.73614 1.25213 1.51949 1.21226 0.95108 0.88225 0.97543 1.22174 0.93506 1.00490 0.98316 1.21554 0.95030 0.97327 0.95001 1.22302 1.01472 0.93286 1.02120 1.19383 0.87623 0.86236 0.94510 1.84817 1.82864 1.25154 1.35760 1.67313 1.14201 1.24644 1.12586 1.22709 0.75499 1.02505 1.01421 0.92541 0.92425 0.92563 0.92537 0.91877 0.92008 0.84579 0.82895 0.83519 0.83788 0.74068 0.90385 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 3 Si 0.88 23.60 24.32 -169.99 -4.13 19.47 16 4 H -0.27 -7.40 6.92 56.52 0.39 -7.01 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.26 -7.02 6.53 56.52 0.37 -6.65 16 7 C -0.52 -14.61 9.15 -34.44 -0.32 -14.93 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.92 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 11 C -0.10 -2.02 5.11 -26.69 -0.14 -2.15 16 12 C -0.14 -2.22 6.10 -26.39 -0.16 -2.39 16 13 C 0.07 1.22 5.92 -3.48 -0.02 1.20 16 14 N -0.58 -11.69 2.97 -173.50 -0.51 -12.21 16 15 C 0.55 10.98 7.65 -12.19 -0.09 10.89 16 16 O -0.54 -12.33 15.79 5.35 0.08 -12.25 16 17 C 0.12 1.78 6.58 -83.02 -0.55 1.23 16 18 C -0.12 -1.50 9.62 -39.05 -0.38 -1.88 16 19 C -0.06 -0.54 10.16 -39.35 -0.40 -0.93 16 20 C -0.17 -1.40 10.05 -39.16 -0.39 -1.79 16 21 C 0.30 3.21 7.74 -17.14 -0.13 3.07 16 22 O -0.48 -4.14 13.56 -18.71 -0.25 -4.39 16 23 N -0.47 -6.35 6.15 -9.87 -0.06 -6.41 16 24 C 0.10 2.32 5.12 -3.71 -0.02 2.30 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.14 2.02 4.00 -85.17 -0.34 1.68 16 32 H 0.15 1.82 7.66 -52.49 -0.40 1.41 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.40 1.42 9.06 45.56 0.41 1.83 16 36 H 0.08 2.02 2.31 -51.93 -0.12 1.90 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -35.27 299.27 -6.26 -41.53 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -3.80 Total: 0.17 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.86 Total: -3.35 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.20 Total: -45.69 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.17 Total: -16.64 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.13 Total: 19.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.27 -6.26 -41.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.149 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds