Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00085 * 3 2 1 6 6 H 1.48501 * 109.46810 * 149.99796 * 3 2 1 7 7 C 1.37872 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00132 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.49613 * 60.06250 * 9 7 2 11 11 C 1.53041 * 109.52507 * 180.14496 * 9 7 2 12 12 C 1.53033 * 109.53868 * 181.32991 * 11 9 7 13 13 C 1.53626 * 109.24394 * 298.51442 * 12 11 9 14 14 N 1.46927 * 108.54571 * 54.85385 * 13 12 11 15 15 C 1.34767 * 120.63121 * 126.36804 * 14 13 12 16 16 O 1.21521 * 120.00247 * 187.45057 * 15 14 13 17 17 C 1.48157 * 120.00342 * 7.45298 * 15 14 13 18 18 C 1.39168 * 119.69373 * 189.58271 * 17 15 14 19 19 C 1.38733 * 119.18389 * 179.97438 * 18 17 15 20 20 C 1.38376 * 118.56274 * 0.02562 * 19 18 17 21 21 C 1.39242 * 119.30474 * 0.27161 * 20 19 18 22 22 O 1.35668 * 119.61597 * 179.72717 * 21 20 19 23 23 N 1.31927 * 120.76373 * 359.40958 * 21 20 19 24 24 C 1.46925 * 118.73695 * 306.09833 * 14 13 12 25 25 H 0.97000 * 120.00072 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.45766 * 301.35297 * 11 9 7 27 27 H 1.09001 * 109.45750 * 61.32407 * 11 9 7 28 28 H 1.09008 * 109.49423 * 58.58620 * 12 11 9 29 29 H 1.08998 * 109.50169 * 178.68375 * 12 11 9 30 30 H 1.08994 * 109.73684 * 295.11793 * 13 12 11 31 31 H 1.09003 * 109.66430 * 174.54972 * 13 12 11 32 32 H 1.07997 * 120.40590 * 0.02562 * 18 17 15 33 33 H 1.08001 * 120.71955 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.34739 * 180.02562 * 20 19 18 35 35 H 0.96695 * 114.00180 * 89.99754 * 22 21 20 36 36 H 1.09000 * 109.58967 * 173.64746 * 24 14 13 37 37 H 1.09002 * 109.58507 * 293.92902 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6810 0.8915 11 6 4.0231 -2.6364 -0.0020 12 6 5.5531 -2.6369 0.0321 13 6 6.0877 -1.9319 -1.2238 14 7 5.4867 -0.5934 -1.2999 15 6 6.2627 0.5020 -1.4193 16 8 5.7669 1.6090 -1.3453 17 6 7.7204 0.3567 -1.6408 18 6 8.5443 1.4756 -1.5638 19 6 9.9078 1.3273 -1.7726 20 6 10.4010 0.0649 -2.0517 21 6 9.5200 -1.0112 -2.1201 22 8 9.9959 -2.2507 -2.3988 23 7 8.2286 -0.8404 -1.9109 24 6 4.0233 -0.4722 -1.2495 25 1 -0.4850 0.8400 0.0004 26 1 3.6401 -3.1593 0.8743 27 1 3.6800 -3.1413 -0.9050 28 1 5.8973 -2.1103 0.9223 29 1 5.9162 -3.6644 0.0534 30 1 5.8174 -2.5048 -2.1108 31 1 7.1722 -1.8425 -1.1606 32 1 8.1275 2.4472 -1.3436 33 1 10.5700 2.1789 -1.7192 34 1 11.4576 -0.0835 -2.2186 35 1 10.2496 -2.7596 -1.6168 36 1 3.7452 0.5807 -1.2032 37 1 3.5882 -0.9263 -2.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397610797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = -43.699102 kcal Electronic energy + Delta-G solvation = -21757.355907 eV Core-core repulsion = 18499.728198 eV Total energy + Delta-G solvation = -3257.627709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09464 -40.61568 -38.67056 -37.85566 -35.46180 -34.10979 -33.30327 -32.22031 -31.42610 -27.38416 -26.90747 -24.89095 -24.31197 -23.53485 -21.87529 -20.61294 -19.42471 -18.98632 -18.68220 -17.59156 -17.12085 -17.02809 -16.65009 -16.22326 -16.07315 -15.47863 -15.23881 -14.97902 -14.70074 -14.38374 -14.12902 -13.91233 -13.71285 -13.19297 -13.17417 -13.00693 -12.70001 -12.35816 -12.14540 -11.92795 -11.63881 -11.51903 -11.29897 -11.09827 -11.01920 -10.82794 -10.13844 -9.85510 -9.60386 -8.41532 -6.43751 -0.49489 0.05721 1.20859 1.26761 1.40530 1.54875 1.86904 2.19499 2.47666 2.62191 2.94911 3.27907 3.72856 3.87990 3.98109 4.01200 4.15492 4.18183 4.29357 4.40314 4.50923 4.53006 4.61735 4.75834 4.91625 4.96159 5.04523 5.07753 5.17688 5.22625 5.35634 5.43983 5.54457 5.58402 5.72206 6.22988 6.31702 6.51089 6.64264 6.75107 6.98720 7.21944 8.74506 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.005781 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.183754 B = 4842.671488 C = 5726.960637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.051 0.949 9 C 0.006 3.994 10 H 0.014 0.986 11 C -0.099 4.099 12 C -0.127 4.127 13 C 0.073 3.927 14 N -0.589 5.589 15 C 0.546 3.454 16 O -0.583 6.583 17 C 0.086 3.914 18 C -0.128 4.128 19 C -0.048 4.048 20 C -0.145 4.145 21 C 0.301 3.699 22 O -0.484 6.484 23 N -0.488 5.488 24 C 0.104 3.896 25 H 0.268 0.732 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.190 0.810 34 H 0.186 0.814 35 H 0.424 0.576 36 H 0.052 0.948 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.094 -2.447 -2.956 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.070 0.930 9 C -0.013 4.013 10 H 0.033 0.967 11 C -0.137 4.137 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.318 5.318 15 C 0.335 3.665 16 O -0.464 6.464 17 C -0.049 4.049 18 C -0.149 4.149 19 C -0.073 4.073 20 C -0.166 4.166 21 C 0.120 3.880 22 O -0.294 6.294 23 N -0.211 5.211 24 C -0.018 4.018 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.178 0.822 32 H 0.164 0.836 33 H 0.207 0.793 34 H 0.203 0.797 35 H 0.286 0.714 36 H 0.070 0.930 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 27.038 -2.388 -3.533 27.373 hybrid contribution -0.378 1.364 0.438 1.481 sum 26.661 -1.024 -3.095 26.859 Atomic orbital electron populations 1.69983 1.07454 1.27951 1.52221 1.25614 0.95223 1.01665 0.94386 0.86083 0.78358 0.80708 0.78327 1.20839 1.21613 1.19204 1.21294 0.90682 0.93346 1.49824 0.93045 1.19397 0.94047 0.95413 0.92470 0.96747 1.21404 0.95490 0.95324 1.01441 1.22059 0.94903 1.01848 0.97655 1.23359 1.03681 0.79990 0.97763 1.48361 1.06539 1.08228 1.68687 1.18701 0.86746 0.84020 0.77075 1.90736 1.75157 1.26730 1.53810 1.20486 0.92498 0.90146 1.01794 1.22268 0.95115 0.99216 0.98321 1.21997 0.93479 0.98996 0.92818 1.22745 1.03039 0.91986 0.98833 1.19635 0.86844 0.87680 0.93830 1.84792 1.82466 1.24753 1.37407 1.66874 1.16282 1.24140 1.13841 1.22231 0.78553 1.00459 1.00538 0.92253 0.92392 0.92496 0.92760 0.87813 0.91651 0.82223 0.83601 0.79287 0.79665 0.71414 0.93020 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 2 C 0.03 1.83 5.45 84.65 0.46 2.29 16 3 Si 0.94 51.20 24.32 68.60 1.67 52.87 16 4 H -0.28 -15.58 6.92 99.48 0.69 -14.89 16 5 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.27 -14.68 6.53 99.48 0.65 -14.03 16 7 C -0.51 -30.17 9.15 25.60 0.23 -29.94 16 8 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 9 C 0.01 0.31 1.84 -11.46 -0.02 0.29 16 10 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 11 C -0.10 -3.89 5.11 30.62 0.16 -3.74 16 12 C -0.13 -3.85 6.10 30.82 0.19 -3.66 16 13 C 0.07 2.30 5.92 86.51 0.51 2.81 16 14 N -0.59 -23.93 2.97 -821.12 -2.44 -26.37 16 15 C 0.55 21.98 7.65 86.88 0.66 22.65 16 16 O -0.58 -27.72 15.79 -3.78 -0.06 -27.78 16 17 C 0.09 2.53 6.58 41.85 0.28 2.81 16 18 C -0.13 -2.83 9.62 22.61 0.22 -2.62 16 19 C -0.05 -0.58 10.16 22.42 0.23 -0.35 16 20 C -0.15 -1.56 10.05 22.54 0.23 -1.34 16 21 C 0.30 5.12 7.74 84.92 0.66 5.78 16 22 O -0.48 -6.18 13.56 -89.85 -1.22 -7.40 16 23 N -0.49 -12.14 6.15 -298.19 -1.83 -13.97 16 24 C 0.10 5.05 5.12 86.36 0.44 5.49 16 25 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.16 4.39 4.00 -68.01 -0.27 4.12 16 32 H 0.15 3.37 7.66 -2.91 -0.02 3.34 16 33 H 0.19 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.42 1.00 9.06 -74.06 -0.67 0.33 16 36 H 0.05 2.78 2.31 -2.39 -0.01 2.77 16 37 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -81.53 299.27 0.76 -80.77 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 0.10 Total: 1.13 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.24 Total: 0.48 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -3.97 Total: -100.06 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.28 Total: -35.18 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.67 Total: 52.87 kcal Total: -81.53 0.76 -80.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397610797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds