Wall clock time and date at job start Mon Mar 30 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86806 * 119.99842 * 2 1 4 4 H 1.48497 * 109.47137 * 269.99795 * 3 2 1 5 5 H 1.48502 * 109.46983 * 29.99695 * 3 2 1 6 6 H 1.48500 * 109.47312 * 149.99686 * 3 2 1 7 7 C 1.39940 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00016 * 197.85091 * 7 2 1 9 9 C 1.41393 * 120.00260 * 17.85390 * 7 2 1 10 10 C 1.40709 * 120.24753 * 204.38139 * 9 7 2 11 11 C 1.37615 * 119.74921 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24516 * 0.02568 * 11 10 9 13 13 C 1.50706 * 119.74881 * 179.97438 * 12 11 10 14 14 S 1.81397 * 109.46929 * 90.00212 * 13 12 11 15 15 C 1.81399 * 103.00058 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47192 * 179.97438 * 15 14 13 17 17 C 1.54963 * 110.92077 * 71.54057 * 16 15 14 18 18 C 1.54269 * 104.15846 * 156.29652 * 17 16 15 19 19 C 1.53879 * 106.64135 * 336.44370 * 18 17 16 20 20 C 1.54268 * 106.59466 * 359.97438 * 19 18 17 21 21 C 1.38636 * 120.50232 * 0.25031 * 12 11 10 22 22 C 1.37618 * 120.24515 * 359.44687 * 21 12 11 23 23 H 0.96998 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.12839 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.88362 * 179.97438 * 11 10 9 26 26 H 1.08998 * 109.47034 * 330.00086 * 13 12 11 27 27 H 1.08998 * 109.47056 * 210.00056 * 13 12 11 28 28 H 1.09000 * 109.47283 * 59.99755 * 15 14 13 29 29 H 1.09002 * 109.47307 * 299.99932 * 15 14 13 30 30 H 1.08998 * 110.67490 * 308.23258 * 16 15 14 31 31 H 1.08990 * 110.48080 * 37.64510 * 17 16 15 32 32 H 1.08999 * 110.52841 * 274.96769 * 17 16 15 33 33 H 1.09003 * 110.03511 * 217.13351 * 18 17 16 34 34 H 1.08999 * 110.03223 * 95.74941 * 18 17 16 35 35 H 1.09002 * 110.03229 * 119.25601 * 19 18 17 36 36 H 1.08990 * 110.03316 * 240.64540 * 19 18 17 37 37 H 1.09007 * 110.48634 * 142.29126 * 20 19 18 38 38 H 1.09003 * 110.48426 * 264.79697 * 20 19 18 39 39 H 1.08004 * 119.87674 * 179.70345 * 21 12 11 40 40 H 1.08002 * 120.12397 * 180.27796 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2873 9 6 1.3522 -2.4071 -0.3743 10 6 1.8259 -3.6497 0.0854 11 6 1.1801 -4.8067 -0.2863 12 6 0.0670 -4.7511 -1.1108 13 6 -0.6313 -6.0251 -1.5114 14 16 -1.9229 -6.4137 -0.2984 15 6 -2.6378 -7.9516 -0.9420 16 6 -3.7613 -8.4191 -0.0145 17 6 -5.0013 -7.4983 -0.1397 18 6 -6.1770 -8.3836 0.3227 19 6 -5.7374 -9.8436 0.1152 20 6 -4.3095 -9.7953 -0.4668 21 6 -0.4052 -3.5328 -1.5744 22 6 0.2212 -2.3628 -1.2104 23 1 -0.4850 0.8400 -0.0004 24 1 2.6932 -3.6954 0.7275 25 1 1.5421 -5.7616 0.0650 26 1 0.0916 -6.8402 -1.5461 27 1 -1.0831 -5.8980 -2.4951 28 1 -1.8650 -8.7187 -0.9914 29 1 -3.0395 -7.7759 -1.9400 30 1 -3.4151 -8.4617 1.0182 31 1 -5.1423 -7.1870 -1.1746 32 1 -4.8994 -6.6295 0.5106 33 1 -7.0624 -8.1716 -0.2766 34 1 -6.3880 -8.2035 1.3768 35 1 -5.7342 -10.3717 1.0688 36 1 -6.4098 -10.3402 -0.5841 37 1 -3.7023 -10.6018 -0.0555 38 1 -4.3387 -9.8579 -1.5547 39 1 -1.2703 -3.5016 -2.2201 40 1 -0.1510 -1.4144 -1.5691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399152436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:33 Heat of formation + Delta-G solvation = -19.723306 kcal Electronic energy + Delta-G solvation = -17938.248716 eV Core-core repulsion = 15227.953890 eV Total energy + Delta-G solvation = -2710.294826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.30474 -37.61813 -34.00529 -31.40907 -31.21499 -29.31828 -28.77516 -27.56795 -25.28344 -23.81116 -21.02485 -20.38739 -20.31079 -19.82395 -17.33566 -16.31642 -15.57917 -15.31903 -15.00210 -14.32303 -14.26788 -13.90182 -13.76203 -13.61395 -13.17593 -12.60988 -12.58569 -12.01804 -11.95502 -11.69922 -11.44280 -11.18307 -11.16415 -11.08889 -11.02289 -10.88328 -10.65136 -10.53598 -10.49723 -10.33961 -9.68480 -9.45433 -9.39771 -9.13756 -7.49642 -7.31084 -7.14165 -6.81097 -4.38738 1.94377 2.79157 3.04459 3.06070 3.08224 3.08522 3.42809 3.89404 4.48267 4.49519 4.60103 4.63038 5.08765 5.25085 5.34640 5.44718 5.51024 5.55694 5.60765 5.63135 5.64490 5.75845 5.78558 5.81409 5.90764 5.98559 6.15210 6.17035 6.26775 6.33197 6.34963 6.37116 6.92477 7.02551 7.23812 7.32094 7.57524 7.80737 8.01067 8.06923 8.24912 8.59377 8.84057 8.92596 10.12605 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.003078 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.720107 B = 9095.643840 C = 9561.581801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.228 4.228 11 C -0.067 4.067 12 C -0.210 4.210 13 C -0.003 4.003 14 S -0.276 6.276 15 C -0.088 4.088 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.079 4.079 22 C -0.168 4.168 23 H 0.282 0.718 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -12.854 -1.977 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.213 4.213 13 C -0.149 4.149 14 S -0.044 6.044 15 C -0.236 4.236 16 C -0.093 4.093 17 C -0.154 4.154 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.099 4.099 22 C -0.187 4.187 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.563 -12.194 -1.054 14.938 hybrid contribution 0.636 0.086 -1.028 1.212 sum -7.927 -12.108 -2.082 14.621 Atomic orbital electron populations 1.69832 1.07635 1.29417 1.34167 1.25955 0.94745 1.01454 0.92236 0.86289 0.80509 0.80447 0.79374 1.19205 1.20243 1.18549 1.19667 0.98207 0.91266 1.39492 0.90255 1.17665 0.90930 0.92053 0.88088 1.20950 1.04011 0.92753 1.07058 1.20358 0.95140 0.96598 0.96656 1.18407 1.00997 0.91605 1.10333 1.21976 0.96235 0.99400 0.97322 1.87447 1.45335 1.29974 1.41674 1.23361 1.00192 0.98551 1.01513 1.21882 0.93657 0.94586 0.99216 1.22426 0.93238 0.97953 1.01829 1.22151 0.98324 0.94702 1.01203 1.22115 0.96377 0.96944 1.00697 1.22428 0.95827 0.96683 1.00638 1.20515 0.97849 0.92461 0.99071 1.21287 0.99540 0.96651 1.01235 0.90700 0.88852 0.89352 0.91461 0.91394 0.90929 0.90864 0.89919 0.91537 0.90909 0.92047 0.91948 0.91989 0.92058 0.91719 0.91599 0.89372 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.95 55.55 0.61 -19.64 16 2 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 3 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.12 3.09 5.57 -106.83 -0.60 2.49 16 10 C -0.23 -5.63 9.80 -38.88 -0.38 -6.01 16 11 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 12 C -0.21 -4.62 5.16 -104.33 -0.54 -5.16 16 13 C 0.00 -0.05 6.06 36.01 0.22 0.17 16 14 S -0.28 -4.82 21.45 -107.50 -2.31 -7.13 16 15 C -0.09 -1.14 5.42 37.16 0.20 -0.94 16 16 C -0.07 -0.85 2.86 -88.59 -0.25 -1.10 16 17 C -0.12 -1.34 6.00 -25.03 -0.15 -1.49 16 18 C -0.13 -1.19 6.80 -25.61 -0.17 -1.37 16 19 C -0.12 -1.06 6.80 -25.61 -0.17 -1.23 16 20 C -0.12 -1.08 6.27 -25.07 -0.16 -1.24 16 21 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 22 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 23 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 24 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 25 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.07 1.15 8.08 -51.92 -0.42 0.73 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.07 0.90 8.00 -51.92 -0.42 0.49 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 39 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -26.87 338.13 -11.78 -38.65 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.61 Total: 4.93 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: -3.54 Total: -35.33 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.61 Total: -19.64 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -2.31 Total: -7.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.87 -11.78 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399152436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.930 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds