Wall clock time and date at job start Mon Mar 30 2020 02:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48507 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47050 * 299.99810 * 3 2 1 6 6 H 1.48497 * 109.47113 * 59.99998 * 3 2 1 7 7 C 1.39934 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00244 * 197.84768 * 7 2 1 9 9 C 1.41415 * 119.99713 * 17.85456 * 7 2 1 10 10 C 1.40782 * 120.20218 * 204.34389 * 9 7 2 11 11 C 1.37655 * 119.89041 * 180.02562 * 10 9 7 12 12 C 1.38512 * 120.32611 * 0.02562 * 11 10 9 13 13 C 1.39296 * 120.42359 * 359.97438 * 12 11 10 14 14 N 1.39690 * 119.95436 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99638 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47199 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.47097 * 125.55874 * 90.00655 * 17 16 15 19 19 C 1.54090 * 103.77309 * 179.97438 * 18 17 16 20 20 O 1.45699 * 104.01065 * 359.97438 * 19 18 17 21 21 C 1.33767 * 109.47904 * 359.75451 * 20 19 18 22 22 O 1.21504 * 123.07521 * 180.23855 * 21 20 19 23 23 C 1.38319 * 120.09653 * 0.02562 * 13 12 11 24 24 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.06006 * 0.03965 * 10 9 7 26 26 H 1.08000 * 119.83462 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.79078 * 180.02562 * 12 11 10 28 28 H 0.96994 * 120.00022 * 180.02562 * 14 13 12 29 29 H 1.09003 * 109.47309 * 300.00171 * 15 14 13 30 30 H 1.09001 * 109.47314 * 60.00144 * 15 14 13 31 31 H 1.09003 * 109.47238 * 300.00347 * 16 15 14 32 32 H 1.09001 * 109.46763 * 59.99938 * 16 15 14 33 33 H 1.09001 * 110.56298 * 298.54427 * 18 17 16 34 34 H 1.08997 * 110.56902 * 61.40214 * 18 17 16 35 35 H 1.09003 * 110.52223 * 118.63138 * 19 18 17 36 36 H 1.09006 * 110.51936 * 241.22167 * 19 18 17 37 37 H 1.08007 * 120.16108 * 179.70305 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3519 -2.4072 -0.3744 10 6 1.8270 -3.6501 0.0854 11 6 1.1838 -4.8097 -0.2840 12 6 0.0707 -4.7603 -1.1070 13 6 -0.4108 -3.5379 -1.5696 14 7 -1.5344 -3.4995 -2.3987 15 6 -2.2058 -4.7443 -2.7805 16 6 -3.3980 -4.4243 -3.6844 17 7 -4.0690 -5.6692 -4.0667 18 6 -5.1674 -6.3107 -3.3279 19 6 -5.4855 -7.5671 -4.1614 20 8 -4.5435 -7.5022 -5.2710 21 6 -3.7868 -6.4057 -5.1502 22 8 -2.9200 -6.1070 -5.9475 23 6 0.2221 -2.3619 -1.2094 24 1 -0.4850 0.8400 0.0004 25 1 2.6946 -3.6938 0.7271 26 1 1.5493 -5.7627 0.0689 27 1 -0.4275 -5.6754 -1.3911 28 1 -1.8700 -2.6487 -2.7216 29 1 -1.5054 -5.3856 -3.3157 30 1 -2.5566 -5.2574 -1.8851 31 1 -4.0982 -3.7833 -3.1489 32 1 -3.0475 -3.9111 -4.5799 33 1 -4.8433 -6.5885 -2.3250 34 1 -6.0344 -5.6518 -3.2824 35 1 -5.3204 -8.4688 -3.5717 36 1 -6.5120 -7.5334 -4.5268 37 1 -0.1475 -1.4138 -1.5714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403276624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:35 Heat of formation + Delta-G solvation = -43.775803 kcal Electronic energy + Delta-G solvation = -20449.487146 eV Core-core repulsion = 17191.856110 eV Total energy + Delta-G solvation = -3257.631035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71549 -37.95192 -37.32622 -36.31426 -34.63337 -33.26322 -30.84957 -29.43245 -29.22544 -26.72718 -25.22660 -24.02213 -23.28998 -21.33884 -20.59190 -19.90275 -17.71327 -17.45714 -17.13325 -16.95610 -15.78347 -15.34206 -14.98493 -14.72379 -14.43067 -14.37975 -14.22548 -13.78818 -13.57531 -12.84183 -12.71119 -12.56498 -12.26200 -11.98243 -11.87352 -11.47059 -11.07080 -10.98384 -10.92838 -10.74062 -10.57069 -10.38557 -9.65436 -9.45014 -9.25437 -9.17580 -8.78099 -7.30838 -6.73151 -6.19988 -4.30492 2.17034 2.57849 2.86093 3.10919 3.16794 3.20575 3.22914 3.33586 3.82755 3.98603 4.27935 4.38034 4.40193 4.72769 4.86690 4.93834 4.97807 5.16153 5.32917 5.38366 5.81639 5.92702 6.05640 6.20959 6.28069 6.58223 6.87494 7.09641 7.13285 7.14281 7.36798 7.42417 7.78802 7.85617 7.95551 8.09665 8.17636 8.48379 8.66393 8.82838 9.01633 9.11430 10.25857 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.003413 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.836989 B = 8200.871077 C = 8632.218745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.138 3.862 10 C -0.256 4.256 11 C -0.066 4.066 12 C -0.298 4.298 13 C 0.215 3.785 14 N -0.759 5.759 15 C 0.122 3.878 16 C 0.137 3.863 17 N -0.627 5.627 18 C 0.063 3.937 19 C 0.041 3.959 20 O -0.330 6.330 21 C 0.641 3.359 22 O -0.516 6.516 23 C -0.229 4.229 24 H 0.276 0.724 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.391 0.609 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -8.358 -4.310 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.135 3.865 10 C -0.276 4.276 11 C -0.085 4.085 12 C -0.321 4.321 13 C 0.117 3.883 14 N -0.394 5.394 15 C -0.005 4.005 16 C 0.016 3.984 17 N -0.375 5.375 18 C -0.060 4.060 19 C -0.034 4.034 20 O -0.240 6.240 21 C 0.395 3.605 22 O -0.400 6.400 23 C -0.253 4.253 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.607 -8.419 -4.904 16.736 hybrid contribution 0.008 1.042 0.204 1.062 sum -13.599 -7.377 -4.700 16.169 Atomic orbital electron populations 1.69869 1.07515 1.28649 1.35853 1.25874 0.94680 1.01107 0.92276 0.86340 0.81139 0.81262 0.78404 1.18449 1.19829 1.20138 1.19591 0.98108 0.91270 1.40398 0.90519 1.17324 0.90070 0.91863 0.87232 1.20877 1.04754 0.92917 1.09062 1.20283 0.95090 0.96295 0.96835 1.19873 1.04584 0.94311 1.13343 1.17601 0.86202 0.94398 0.90077 1.44169 1.32203 1.05914 1.57085 1.21332 0.93084 0.89105 0.96984 1.21473 0.94248 0.82357 1.00324 1.47918 1.37593 1.26567 1.25402 1.22851 0.91283 0.94311 0.97564 1.24285 0.93741 0.99234 0.86105 1.87287 1.47926 1.41839 1.46966 1.18503 0.81208 0.78849 0.81932 1.91077 1.31891 1.71318 1.45743 1.20714 1.02554 0.94978 1.07029 0.91280 0.89332 0.89617 0.89808 0.77611 0.92753 0.93115 0.89177 0.88875 0.88693 0.88880 0.87546 0.87650 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.96 55.55 0.61 -19.86 16 2 C 0.08 1.97 5.14 -17.35 -0.09 1.88 16 3 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.18 16 10 C -0.26 -6.51 9.79 -38.83 -0.38 -6.89 16 11 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 12 C -0.30 -6.89 9.32 -39.09 -0.36 -7.25 16 13 C 0.22 5.03 6.64 -83.85 -0.56 4.48 16 14 N -0.76 -14.12 5.73 -58.68 -0.34 -14.45 16 15 C 0.12 1.86 5.23 -4.04 -0.02 1.84 16 16 C 0.14 1.61 6.13 -4.04 -0.02 1.59 16 17 N -0.63 -6.89 2.96 -178.85 -0.53 -7.42 16 18 C 0.06 0.39 7.70 -3.15 -0.02 0.37 16 19 C 0.04 0.23 8.23 37.73 0.31 0.54 16 20 O -0.33 -3.83 11.09 -37.82 -0.42 -4.25 16 21 C 0.64 9.06 8.85 53.71 0.48 9.54 16 22 O -0.52 -9.62 17.54 -19.11 -0.34 -9.96 16 23 C -0.23 -5.97 8.53 -38.68 -0.33 -6.30 16 24 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 27 H 0.08 1.76 6.70 -52.49 -0.35 1.41 16 28 H 0.39 6.68 8.48 -40.82 -0.35 6.34 16 29 H 0.05 0.95 7.94 -51.93 -0.41 0.54 16 30 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.19 7.92 -51.93 -0.41 0.78 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -33.01 317.56 -8.36 -41.37 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.77 Total: 7.83 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.34 Total: -11.87 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.26 Total: -41.73 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.75 Total: -14.21 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.01 -8.36 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403276624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.402 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds