Wall clock time and date at job start Mon Mar 30 2020 02:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48507 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47050 * 299.99810 * 3 2 1 6 6 H 1.48497 * 109.47113 * 59.99998 * 3 2 1 7 7 C 1.39934 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00244 * 197.84768 * 7 2 1 9 9 C 1.41415 * 119.99713 * 17.85456 * 7 2 1 10 10 C 1.40782 * 120.20218 * 204.34389 * 9 7 2 11 11 C 1.37655 * 119.89041 * 180.02562 * 10 9 7 12 12 C 1.38512 * 120.32611 * 0.02562 * 11 10 9 13 13 C 1.39296 * 120.42359 * 359.97438 * 12 11 10 14 14 N 1.39690 * 119.95436 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99638 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47199 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.47097 * 125.55874 * 90.00655 * 17 16 15 19 19 C 1.54090 * 103.77309 * 179.97438 * 18 17 16 20 20 O 1.45699 * 104.01065 * 359.97438 * 19 18 17 21 21 C 1.33767 * 109.47904 * 359.75451 * 20 19 18 22 22 O 1.21504 * 123.07521 * 180.23855 * 21 20 19 23 23 C 1.38319 * 120.09653 * 0.02562 * 13 12 11 24 24 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.06006 * 0.03965 * 10 9 7 26 26 H 1.08000 * 119.83462 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.79078 * 180.02562 * 12 11 10 28 28 H 0.96994 * 120.00022 * 180.02562 * 14 13 12 29 29 H 1.09003 * 109.47309 * 300.00171 * 15 14 13 30 30 H 1.09001 * 109.47314 * 60.00144 * 15 14 13 31 31 H 1.09003 * 109.47238 * 300.00347 * 16 15 14 32 32 H 1.09001 * 109.46763 * 59.99938 * 16 15 14 33 33 H 1.09001 * 110.56298 * 298.54427 * 18 17 16 34 34 H 1.08997 * 110.56902 * 61.40214 * 18 17 16 35 35 H 1.09003 * 110.52223 * 118.63138 * 19 18 17 36 36 H 1.09006 * 110.51936 * 241.22167 * 19 18 17 37 37 H 1.08007 * 120.16108 * 179.70305 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3519 -2.4072 -0.3744 10 6 1.8270 -3.6501 0.0854 11 6 1.1838 -4.8097 -0.2840 12 6 0.0707 -4.7603 -1.1070 13 6 -0.4108 -3.5379 -1.5696 14 7 -1.5344 -3.4995 -2.3987 15 6 -2.2058 -4.7443 -2.7805 16 6 -3.3980 -4.4243 -3.6844 17 7 -4.0690 -5.6692 -4.0667 18 6 -5.1674 -6.3107 -3.3279 19 6 -5.4855 -7.5671 -4.1614 20 8 -4.5435 -7.5022 -5.2710 21 6 -3.7868 -6.4057 -5.1502 22 8 -2.9200 -6.1070 -5.9475 23 6 0.2221 -2.3619 -1.2094 24 1 -0.4850 0.8400 0.0004 25 1 2.6946 -3.6938 0.7271 26 1 1.5493 -5.7627 0.0689 27 1 -0.4275 -5.6754 -1.3911 28 1 -1.8700 -2.6487 -2.7216 29 1 -1.5054 -5.3856 -3.3157 30 1 -2.5566 -5.2574 -1.8851 31 1 -4.0982 -3.7833 -3.1489 32 1 -3.0475 -3.9111 -4.5799 33 1 -4.8433 -6.5885 -2.3250 34 1 -6.0344 -5.6518 -3.2824 35 1 -5.3204 -8.4688 -3.5717 36 1 -6.5120 -7.5334 -4.5268 37 1 -0.1475 -1.4138 -1.5714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403276624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:34 Heat of formation + Delta-G solvation = -65.668026 kcal Electronic energy + Delta-G solvation = -20450.436464 eV Core-core repulsion = 17191.856110 eV Total energy + Delta-G solvation = -3258.580353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56803 -39.69338 -38.40794 -37.53392 -36.07539 -35.03508 -31.94039 -31.35223 -30.27128 -28.17173 -27.14883 -24.81716 -24.39436 -22.92793 -21.83831 -21.69764 -19.16916 -18.41827 -18.31851 -17.87515 -17.41438 -16.61636 -16.47745 -16.32727 -15.98455 -15.37832 -15.07715 -14.93155 -14.71965 -14.36290 -14.19540 -14.00688 -13.60321 -13.26761 -13.10049 -12.96610 -12.75057 -12.62201 -12.35373 -12.09266 -11.85830 -11.66186 -11.55290 -11.32686 -11.07636 -10.53311 -10.04356 -9.26401 -8.62145 -7.96220 -6.31657 1.07249 1.28702 1.31571 1.40243 1.54228 1.55637 1.57788 2.24282 2.51950 2.80786 2.92993 3.36528 3.60961 3.81508 3.85597 4.03712 4.23210 4.32243 4.48735 4.52919 4.63970 4.72920 4.75916 4.82834 4.95460 4.97251 5.20813 5.24767 5.29920 5.43670 5.58330 5.94014 6.08233 6.20812 6.22359 6.27940 6.56477 6.84620 6.91926 7.01766 7.05409 7.22623 8.38752 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.003413 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.836989 B = 8200.871077 C = 8632.218745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.108 3.892 10 C -0.284 4.284 11 C -0.063 4.063 12 C -0.305 4.305 13 C 0.219 3.781 14 N -0.751 5.751 15 C 0.126 3.874 16 C 0.146 3.854 17 N -0.622 5.622 18 C 0.059 3.941 19 C 0.036 3.964 20 O -0.347 6.347 21 C 0.637 3.363 22 O -0.578 6.578 23 C -0.256 4.256 24 H 0.286 0.714 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.398 0.602 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 -8.709 -3.800 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.105 3.895 10 C -0.304 4.304 11 C -0.082 4.082 12 C -0.327 4.327 13 C 0.118 3.882 14 N -0.384 5.384 15 C 0.000 4.000 16 C 0.025 3.975 17 N -0.369 5.369 18 C -0.062 4.062 19 C -0.037 4.037 20 O -0.257 6.257 21 C 0.391 3.609 22 O -0.466 6.466 23 C -0.280 4.280 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.125 0.875 28 H 0.232 0.768 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.786 -8.810 -4.377 18.600 hybrid contribution 0.520 0.995 0.068 1.124 sum -15.266 -7.815 -4.310 17.684 Atomic orbital electron populations 1.69904 1.08783 1.30135 1.35621 1.26684 0.95530 1.04171 0.91266 0.85216 0.79371 0.76485 0.78930 1.18582 1.18901 1.18932 1.19825 0.98218 0.92697 1.42537 0.91121 1.17719 0.90987 0.92813 0.87942 1.21039 1.05710 0.93354 1.10328 1.20637 0.94623 0.96957 0.95960 1.20191 1.04579 0.95024 1.12938 1.17711 0.86913 0.93760 0.89771 1.44206 1.30918 1.07687 1.55637 1.21409 0.93579 0.87253 0.97767 1.21326 0.93826 0.83099 0.99265 1.47957 1.38094 1.25925 1.24924 1.23267 0.90658 0.94714 0.97600 1.24812 0.94039 1.00051 0.84797 1.87249 1.48607 1.40568 1.49300 1.18728 0.80810 0.79372 0.81991 1.91016 1.34640 1.72991 1.48000 1.20652 1.03477 0.95432 1.08432 0.90330 0.89122 0.86484 0.87512 0.76806 0.95171 0.91938 0.85792 0.90278 0.87162 0.85831 0.85260 0.84520 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.81 10.96 21.82 0.24 -42.57 16 2 C 0.04 1.98 5.14 85.25 0.44 2.42 16 3 Si 0.98 38.92 29.59 68.60 2.03 40.95 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -28.15 9.05 23.46 0.21 -27.94 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 9 C 0.11 6.11 5.57 -21.31 -0.12 5.99 16 10 C -0.28 -14.75 9.79 22.75 0.22 -14.53 16 11 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 12 C -0.30 -13.76 9.32 22.59 0.21 -13.55 16 13 C 0.22 10.24 6.64 38.16 0.25 10.49 16 14 N -0.75 -27.35 5.73 -339.58 -1.95 -29.30 16 15 C 0.13 3.66 5.23 86.38 0.45 4.11 16 16 C 0.15 3.16 6.13 86.38 0.53 3.69 16 17 N -0.62 -12.32 2.96 -951.45 -2.82 -15.14 16 18 C 0.06 0.49 7.70 86.63 0.67 1.16 16 19 C 0.04 0.27 8.23 72.35 0.60 0.87 16 20 O -0.35 -7.55 11.09 -47.28 -0.52 -8.07 16 21 C 0.64 17.61 8.85 129.91 1.15 18.76 16 22 O -0.58 -22.21 17.54 19.67 0.35 -21.86 16 23 C -0.26 -13.69 8.53 22.85 0.19 -13.49 16 24 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 25 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 26 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 27 H 0.11 4.28 6.70 -2.91 -0.02 4.26 16 28 H 0.40 13.36 8.48 -92.71 -0.79 12.57 16 29 H 0.03 1.04 7.94 -2.39 -0.02 1.02 16 30 H 0.06 1.70 7.94 -2.39 -0.02 1.68 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.14 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 Total: -1.00 -75.59 317.56 2.66 -72.93 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.30 Total: 27.78 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 5.03 Total: -24.72 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -4.53 Total: -87.01 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.18 Total: -29.94 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -75.59 2.66 -72.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403276624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.260 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds