Wall clock time and date at job start Mon Mar 30 2020 01:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48501 * 109.46884 * 269.99987 * 3 2 1 5 5 H 1.48494 * 109.47286 * 30.00064 * 3 2 1 6 6 H 1.48501 * 109.47166 * 150.00363 * 3 2 1 7 7 C 1.38944 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00507 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99882 * 179.97438 * 7 2 1 10 10 C 1.34780 * 120.00409 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99701 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00134 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46817 * 174.47193 * 12 10 9 14 14 C 1.47912 * 110.99973 * 284.16914 * 13 12 10 15 15 C 1.54597 * 102.62476 * 265.52815 * 14 13 12 16 16 H 1.09003 * 110.73560 * 92.83186 * 15 14 13 17 17 C 1.53001 * 110.89556 * 216.08479 * 15 14 13 18 18 O 1.42907 * 109.47107 * 179.97438 * 17 15 14 19 19 C 1.51576 * 102.84250 * 334.49803 * 15 14 13 20 20 C 1.37925 * 131.56112 * 196.03478 * 19 15 14 21 21 C 1.38301 * 120.08088 * 179.57279 * 20 19 15 22 22 C 1.38308 * 119.88275 * 359.94405 * 21 20 19 23 23 C 1.37908 * 120.26594 * 0.15260 * 22 21 20 24 24 C 1.38959 * 107.95957 * 16.09955 * 19 15 14 25 25 H 0.96998 * 120.00057 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99609 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47161 * 54.47414 * 12 10 9 28 28 H 1.09004 * 109.47268 * 294.47084 * 12 10 9 29 29 H 1.09005 * 110.77421 * 147.25104 * 14 13 12 30 30 H 1.08994 * 110.94132 * 23.88883 * 14 13 12 31 31 H 1.08997 * 109.46904 * 299.96489 * 17 15 14 32 32 H 1.08995 * 109.47228 * 59.96882 * 17 15 14 33 33 H 0.96694 * 113.99656 * 179.97438 * 18 17 15 34 34 H 1.07999 * 119.96176 * 359.54235 * 20 19 15 35 35 H 1.07996 * 120.06226 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.86811 * 180.18003 * 22 21 20 37 37 H 1.08001 * 119.90417 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0011 13 7 6.0504 -3.7491 0.1324 14 6 5.9083 -4.2297 1.5240 15 6 7.2971 -3.9238 2.1305 16 1 7.3014 -2.9452 2.6107 17 6 7.7118 -5.0133 3.1214 18 8 8.9973 -4.7011 3.6621 19 6 8.2038 -3.9295 0.9159 20 6 9.5757 -4.0099 0.7986 21 6 10.1661 -4.0034 -0.4521 22 6 9.3782 -3.9173 -1.5856 23 6 8.0061 -3.8347 -1.4737 24 6 7.4042 -3.8311 -0.2163 25 1 -0.4850 0.8400 -0.0004 26 1 3.8648 -0.3632 -0.0007 27 1 5.9240 -1.7734 0.8353 28 1 5.9241 -1.9448 -0.9364 29 1 5.7048 -5.3003 1.5444 30 1 5.1275 -3.6791 2.0485 31 1 6.9815 -5.0671 3.9288 32 1 7.7570 -5.9735 2.6077 33 1 9.3238 -5.3504 4.2999 34 1 10.1898 -4.0775 1.6844 35 1 11.2403 -4.0659 -0.5436 36 1 9.8392 -3.9152 -2.5622 37 1 7.3965 -3.7681 -2.3627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433315330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:20 Heat of formation + Delta-G solvation = -59.499150 kcal Electronic energy + Delta-G solvation = -21114.916887 eV Core-core repulsion = 17856.604036 eV Total energy + Delta-G solvation = -3258.312851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.06462 -40.08145 -37.92850 -37.41860 -35.97967 -33.85425 -33.58346 -31.07437 -30.36043 -28.82357 -26.54137 -25.26214 -23.86226 -22.17516 -21.58190 -21.16563 -20.19515 -18.38644 -17.89281 -17.65151 -17.03629 -16.80912 -16.35910 -16.18502 -15.77332 -15.57253 -15.03348 -14.79976 -14.70108 -14.35035 -14.19769 -13.90008 -13.49076 -13.36773 -13.14352 -12.92717 -12.79597 -12.43542 -12.33027 -12.12946 -12.00017 -11.75103 -11.53625 -10.87524 -10.77628 -10.27106 -10.18008 -9.70578 -8.85064 -8.43005 -6.04083 0.36807 0.49999 1.28864 1.33653 1.42566 1.89313 2.21013 2.40526 2.81998 3.00111 3.12220 3.19447 3.59824 3.71327 3.99204 4.09848 4.15437 4.18549 4.28301 4.29332 4.37165 4.39979 4.52646 4.63615 4.73123 4.78532 4.81675 5.01768 5.18595 5.42477 5.50491 5.57011 5.64983 5.82857 5.87656 5.95137 6.32768 6.56744 6.84994 6.90943 7.35729 7.91499 8.74476 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.004468 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.750473 B = 6265.637141 C = 6694.448300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.961 3.039 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.328 4.328 8 H 0.057 0.943 9 N -0.590 5.590 10 C 0.453 3.547 11 O -0.603 6.603 12 C 0.060 3.940 13 N -0.490 5.490 14 C 0.068 3.932 15 C -0.076 4.076 16 H 0.088 0.912 17 C 0.100 3.900 18 O -0.581 6.581 19 C -0.138 4.138 20 C -0.082 4.082 21 C -0.134 4.134 22 C -0.100 4.100 23 C -0.128 4.128 24 C 0.067 3.933 25 H 0.280 0.720 26 H 0.389 0.611 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.398 0.602 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.816 -4.417 3.741 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.210 4.210 3 Si 0.781 3.219 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.158 1.158 7 C -0.457 4.457 8 H 0.075 0.925 9 N -0.232 5.232 10 C 0.240 3.760 11 O -0.486 6.486 12 C -0.069 4.069 13 N -0.206 5.206 14 C -0.059 4.059 15 C -0.095 4.095 16 H 0.106 0.894 17 C 0.022 3.978 18 O -0.390 6.390 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.152 4.152 22 C -0.119 4.119 23 C -0.148 4.148 24 C -0.029 4.029 25 H 0.089 0.911 26 H 0.224 0.776 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.248 0.752 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.757 -4.807 3.017 24.426 hybrid contribution -0.277 0.788 0.764 1.132 sum 23.481 -4.020 3.781 24.120 Atomic orbital electron populations 1.69795 1.08056 1.29284 1.50118 1.26059 0.96421 1.02529 0.95996 0.85415 0.79445 0.76996 0.80015 1.18091 1.19777 1.15771 1.18996 0.81212 0.95032 1.50453 0.92457 1.42021 1.05950 1.07392 1.67811 1.20643 0.90188 0.83516 0.81623 1.90550 1.70954 1.32590 1.54553 1.21903 0.91042 0.89410 1.04550 1.59622 1.15905 1.20558 1.24550 1.22993 0.95419 1.02026 0.85491 1.21324 0.93166 1.00882 0.94171 0.89396 1.21869 0.85309 0.95580 0.95060 1.86405 1.34637 1.54048 1.63887 1.20978 0.94757 1.04266 0.94017 1.20724 0.92438 0.98091 0.98763 1.21447 1.01165 1.01083 0.91537 1.21241 0.91953 0.98394 1.00270 1.20740 0.95681 1.03417 0.94978 1.19818 0.87277 1.00693 0.95098 0.91063 0.77589 0.90051 0.86797 0.89365 0.90870 0.91870 0.93008 0.75184 0.84549 0.82962 0.82958 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.96 21.66 0.30 -55.98 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 3 Si 0.96 39.11 27.74 68.60 1.90 41.01 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 7 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 8 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 9 N -0.59 -28.44 5.09 -306.98 -1.56 -30.00 16 10 C 0.45 21.20 7.25 87.65 0.64 21.84 16 11 O -0.60 -34.18 15.54 -3.08 -0.05 -34.23 16 12 C 0.06 2.07 5.22 85.55 0.45 2.52 16 13 N -0.49 -16.84 4.61 -692.96 -3.19 -20.04 16 14 C 0.07 2.10 5.89 86.65 0.51 2.61 16 15 C -0.08 -1.89 3.24 -10.72 -0.03 -1.93 16 16 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 17 C 0.10 1.90 6.40 71.98 0.46 2.36 16 18 O -0.58 -9.73 12.05 -148.98 -1.80 -11.52 16 19 C -0.14 -3.55 5.64 -19.49 -0.11 -3.66 16 20 C -0.08 -1.76 9.58 22.21 0.21 -1.55 16 21 C -0.13 -2.41 10.06 22.30 0.22 -2.19 16 22 C -0.10 -1.92 10.02 22.21 0.22 -1.70 16 23 C -0.13 -3.25 10.05 22.47 0.23 -3.02 16 24 C 0.07 1.95 5.48 38.28 0.21 2.16 16 25 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.39 15.65 5.76 -92.70 -0.53 15.12 16 27 H 0.08 2.42 7.94 -2.39 -0.02 2.40 16 28 H 0.11 3.45 7.95 -2.38 -0.02 3.43 16 29 H 0.09 2.70 7.92 -2.38 -0.02 2.68 16 30 H 0.07 2.49 7.31 -2.39 -0.02 2.48 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.40 2.87 9.12 -74.06 -0.68 2.19 16 34 H 0.14 2.66 6.90 -2.91 -0.02 2.64 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -78.17 311.41 -0.23 -78.40 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.16 Total: 33.58 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.32 Total: -1.22 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.45 Total: -106.02 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.84 Total: -45.75 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.01 kcal Total: -78.17 -0.23 -78.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433315330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.903 kcal (2) G-P(sol) polarization free energy of solvation -78.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds