Wall clock time and date at job start Mon Mar 30 2020 01:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47511 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00230 * 3 2 1 6 6 H 1.48504 * 109.47046 * 59.99813 * 3 2 1 7 7 C 1.37883 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46607 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46597 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99515 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00459 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99868 * 179.97438 * 12 11 10 15 15 C 1.39938 * 120.00182 * 184.44115 * 14 12 11 16 16 C 1.39030 * 120.08239 * 325.39208 * 15 14 12 17 17 C 1.38131 * 119.68096 * 179.97438 * 16 15 14 18 18 C 1.38010 * 120.43139 * 0.18361 * 17 16 15 19 19 C 1.39315 * 120.38834 * 0.03457 * 18 17 16 20 20 C 1.38311 * 120.08125 * 145.36266 * 15 14 12 21 21 C 1.51940 * 132.11660 * 358.87945 * 20 15 14 22 22 C 1.54704 * 101.78379 * 195.82671 * 21 20 15 23 23 O 1.36145 * 129.85605 * 179.52739 * 19 18 17 24 24 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47032 * 60.00187 * 9 7 2 26 26 H 1.09000 * 109.47103 * 299.99965 * 9 7 2 27 27 H 1.08994 * 109.47405 * 59.99878 * 10 9 7 28 28 H 1.08998 * 109.46860 * 299.99849 * 10 9 7 29 29 H 0.96999 * 120.00506 * 359.97438 * 11 10 9 30 30 H 0.97002 * 119.99651 * 4.45041 * 14 12 11 31 31 H 1.07991 * 120.15945 * 359.93569 * 16 15 14 32 32 H 1.07999 * 119.77877 * 180.21275 * 17 16 15 33 33 H 1.07998 * 119.80683 * 180.02562 * 18 17 16 34 34 H 1.08996 * 110.89909 * 77.75282 * 21 20 15 35 35 H 1.09000 * 111.10257 * 313.97914 * 21 20 15 36 36 H 1.08998 * 110.74884 * 216.53382 * 22 21 20 37 37 H 1.08994 * 110.75048 * 93.35593 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0980 -0.0007 13 8 3.4026 -6.0980 -0.0003 14 7 1.5128 -7.2652 -0.0008 15 6 2.2094 -8.4753 0.0924 16 6 3.4581 -8.6084 -0.5043 17 6 4.1386 -9.8065 -0.4067 18 6 3.5853 -10.8711 0.2753 19 6 2.3328 -10.7507 0.8733 20 6 1.6576 -9.5418 0.7789 21 6 0.3521 -9.6976 1.5405 22 6 0.6158 -10.9833 2.3596 23 8 1.6100 -11.6656 1.5762 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8904 28 1 2.8719 -3.6043 -0.8895 29 1 0.5428 -4.9308 0.0000 30 1 0.5450 -7.2664 -0.0655 31 1 3.8935 -7.7793 -1.0421 32 1 5.1102 -9.9105 -0.8667 33 1 4.1264 -11.8031 0.3457 34 1 -0.4837 -9.8369 0.8549 35 1 0.1772 -8.8459 2.1979 36 1 -0.2909 -11.5829 2.4395 37 1 1.0036 -10.7385 3.3484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434132136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:25 Heat of formation + Delta-G solvation = -39.329331 kcal Electronic energy + Delta-G solvation = -20314.480696 eV Core-core repulsion = 17057.042474 eV Total energy + Delta-G solvation = -3257.438222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34571 -39.96926 -37.49865 -35.08809 -34.56517 -32.91752 -32.30120 -30.01243 -29.52922 -28.35997 -24.89066 -23.63770 -22.79989 -21.75878 -20.99208 -20.55014 -18.43180 -17.90469 -16.81798 -16.48240 -16.31278 -15.63328 -15.53466 -15.26492 -14.55591 -14.44319 -13.82847 -13.66804 -13.51776 -13.20010 -13.05716 -12.70587 -12.32478 -12.04055 -11.91186 -11.37960 -11.23908 -11.16438 -11.05422 -10.65215 -10.44344 -10.23865 -9.89254 -9.62058 -9.29499 -8.68297 -8.46373 -8.35424 -7.97087 -6.13225 -4.16019 1.17687 1.33424 2.77916 3.08453 3.26291 3.30913 3.34181 3.39424 3.74113 4.22675 4.32737 4.38978 4.48486 4.73061 4.88900 5.07395 5.16036 5.24246 5.27645 5.44778 5.46740 5.54528 5.65290 6.05679 6.14493 6.29355 6.31417 6.34834 6.47816 6.67504 6.70661 6.84055 7.06353 7.12029 7.49809 7.56654 7.85499 8.13504 8.26800 8.74757 8.90410 9.49138 10.98461 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.002995 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.408641 B = 9347.663031 C = 9902.370597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.731 5.731 12 C 0.697 3.303 13 O -0.577 6.577 14 N -0.691 5.691 15 C 0.226 3.774 16 C -0.148 4.148 17 C -0.068 4.068 18 C -0.160 4.160 19 C 0.120 3.880 20 C -0.214 4.214 21 C -0.105 4.105 22 C 0.054 3.946 23 O -0.306 6.306 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.395 0.605 30 H 0.405 0.595 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -21.760 1.751 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.384 5.384 12 C 0.398 3.602 13 O -0.454 6.454 14 N -0.339 5.339 15 C 0.130 3.870 16 C -0.168 4.168 17 C -0.086 4.086 18 C -0.180 4.180 19 C 0.075 3.925 20 C -0.218 4.218 21 C -0.142 4.142 22 C -0.021 4.021 23 O -0.220 6.220 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.240 0.760 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.503 -21.729 1.782 21.807 hybrid contribution -0.771 1.134 0.082 1.373 sum -0.268 -20.595 1.863 20.681 Atomic orbital electron populations 1.69961 1.06107 1.26818 1.50423 1.25000 0.94903 0.99464 0.94946 0.86446 0.80189 0.83255 0.77627 1.19533 1.20918 1.20931 1.21077 0.93325 0.90270 1.51301 0.92110 1.19339 0.94237 0.91043 0.97881 1.21682 0.95736 0.80026 1.00947 1.45591 1.10060 1.05170 1.77596 1.16057 0.85740 0.80275 0.78177 1.90897 1.11394 1.86076 1.57061 1.42725 1.10081 1.03618 1.77433 1.16708 0.92673 0.83278 0.94384 1.21351 0.94866 0.98750 1.01866 1.20783 0.99409 0.91541 0.96917 1.20195 0.92905 1.00693 1.04164 1.19225 0.91906 0.87473 0.93926 1.20453 0.98906 0.95840 1.06552 1.21747 0.95319 0.98765 0.98346 1.23783 0.91307 0.92574 0.94479 1.86824 1.46345 1.31408 1.57454 0.92875 0.95902 0.95920 0.92487 0.92455 0.77153 0.76004 0.83344 0.84841 0.85617 0.89413 0.89192 0.87705 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.87 5.61 -4.04 -0.02 2.85 16 11 N -0.73 -12.31 5.56 -65.22 -0.36 -12.67 16 12 C 0.70 11.80 8.41 -86.91 -0.73 11.07 16 13 O -0.58 -11.76 13.76 5.29 0.07 -11.69 16 14 N -0.69 -9.07 5.32 -14.32 -0.08 -9.14 16 15 C 0.23 3.08 6.29 -83.84 -0.53 2.55 16 16 C -0.15 -2.08 8.71 -39.33 -0.34 -2.42 16 17 C -0.07 -0.79 10.01 -39.70 -0.40 -1.19 16 18 C -0.16 -1.83 10.06 -39.26 -0.39 -2.22 16 19 C 0.12 1.47 7.03 -38.98 -0.27 1.20 16 20 C -0.21 -2.56 6.20 -103.78 -0.64 -3.20 16 21 C -0.10 -0.90 7.12 -26.37 -0.19 -1.09 16 22 C 0.05 0.43 8.00 38.05 0.30 0.73 16 23 O -0.31 -3.49 11.11 -20.20 -0.22 -3.71 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.61 8.49 -40.82 -0.35 5.26 16 30 H 0.40 4.00 8.84 -40.82 -0.36 3.64 16 31 H 0.15 2.34 6.21 -52.49 -0.33 2.02 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 317.83 15.07 4.79 4.79 Total: -1.00 -32.43 317.83 -8.66 -41.08 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.80 Total: 4.84 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.77 Total: -4.58 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.30 Total: -46.85 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.15 Total: -15.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.43 -8.66 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434132136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.756 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds