Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47511 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00230 * 3 2 1 6 6 H 1.48504 * 109.47046 * 59.99813 * 3 2 1 7 7 C 1.37883 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46607 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46597 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99515 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00459 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99868 * 179.97438 * 12 11 10 15 15 C 1.39938 * 120.00182 * 184.44115 * 14 12 11 16 16 C 1.39030 * 120.08239 * 325.39208 * 15 14 12 17 17 C 1.38131 * 119.68096 * 179.97438 * 16 15 14 18 18 C 1.38010 * 120.43139 * 0.18361 * 17 16 15 19 19 C 1.39315 * 120.38834 * 0.03457 * 18 17 16 20 20 C 1.38311 * 120.08125 * 145.36266 * 15 14 12 21 21 C 1.51940 * 132.11660 * 358.87945 * 20 15 14 22 22 C 1.54704 * 101.78379 * 195.82671 * 21 20 15 23 23 O 1.36145 * 129.85605 * 179.52739 * 19 18 17 24 24 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47032 * 60.00187 * 9 7 2 26 26 H 1.09000 * 109.47103 * 299.99965 * 9 7 2 27 27 H 1.08994 * 109.47405 * 59.99878 * 10 9 7 28 28 H 1.08998 * 109.46860 * 299.99849 * 10 9 7 29 29 H 0.96999 * 120.00506 * 359.97438 * 11 10 9 30 30 H 0.97002 * 119.99651 * 4.45041 * 14 12 11 31 31 H 1.07991 * 120.15945 * 359.93569 * 16 15 14 32 32 H 1.07999 * 119.77877 * 180.21275 * 17 16 15 33 33 H 1.07998 * 119.80683 * 180.02562 * 18 17 16 34 34 H 1.08996 * 110.89909 * 77.75282 * 21 20 15 35 35 H 1.09000 * 111.10257 * 313.97914 * 21 20 15 36 36 H 1.08998 * 110.74884 * 216.53382 * 22 21 20 37 37 H 1.08994 * 110.75048 * 93.35593 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0980 -0.0007 13 8 3.4026 -6.0980 -0.0003 14 7 1.5128 -7.2652 -0.0008 15 6 2.2094 -8.4753 0.0924 16 6 3.4581 -8.6084 -0.5043 17 6 4.1386 -9.8065 -0.4067 18 6 3.5853 -10.8711 0.2753 19 6 2.3328 -10.7507 0.8733 20 6 1.6576 -9.5418 0.7789 21 6 0.3521 -9.6976 1.5405 22 6 0.6158 -10.9833 2.3596 23 8 1.6100 -11.6656 1.5762 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8904 28 1 2.8719 -3.6043 -0.8895 29 1 0.5428 -4.9308 0.0000 30 1 0.5450 -7.2664 -0.0655 31 1 3.8935 -7.7793 -1.0421 32 1 5.1102 -9.9105 -0.8667 33 1 4.1264 -11.8031 0.3457 34 1 -0.4837 -9.8369 0.8549 35 1 0.1772 -8.8459 2.1979 36 1 -0.2909 -11.5829 2.4395 37 1 1.0036 -10.7385 3.3484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434132136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -61.199971 kcal Electronic energy + Delta-G solvation = -20315.429078 eV Core-core repulsion = 17057.042474 eV Total energy + Delta-G solvation = -3258.386604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26497 -41.18385 -38.52963 -36.65089 -35.77963 -34.82926 -33.18016 -31.63959 -30.47530 -29.46507 -26.73235 -24.50670 -23.88514 -22.95220 -22.50324 -21.76886 -19.68982 -18.93041 -18.43928 -17.71066 -17.19995 -16.79180 -16.66987 -16.48407 -16.40941 -15.73276 -15.28076 -15.14797 -14.37566 -14.27128 -14.18956 -13.99169 -13.58171 -13.21672 -12.98926 -12.96639 -12.64835 -12.51461 -12.29377 -12.19848 -11.92118 -11.67043 -11.49851 -11.31460 -11.04378 -10.61088 -10.11098 -9.30243 -8.99159 -8.24420 -6.34258 0.23902 0.35969 1.41352 1.42309 1.52406 1.57590 1.99866 2.31971 2.41102 2.77266 3.10901 3.18394 3.48954 3.67514 4.05251 4.15488 4.22279 4.36167 4.46308 4.50694 4.52278 4.54302 4.76231 4.85353 4.86078 4.90024 5.20067 5.22336 5.24306 5.42116 5.47710 5.53821 5.58924 5.70794 5.78263 5.93364 6.16410 6.21729 6.79097 6.94733 7.35098 7.42396 8.87642 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.002995 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.408641 B = 9347.663031 C = 9902.370597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.724 5.724 12 C 0.699 3.301 13 O -0.613 6.613 14 N -0.672 5.672 15 C 0.202 3.798 16 C -0.171 4.171 17 C -0.067 4.067 18 C -0.160 4.160 19 C 0.109 3.891 20 C -0.215 4.215 21 C -0.103 4.103 22 C 0.049 3.951 23 O -0.318 6.318 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.409 0.591 30 H 0.421 0.579 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -22.837 2.294 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.493 6.493 14 N -0.321 5.321 15 C 0.107 3.893 16 C -0.192 4.192 17 C -0.085 4.085 18 C -0.179 4.179 19 C 0.063 3.937 20 C -0.219 4.219 21 C -0.140 4.140 22 C -0.025 4.025 23 O -0.232 6.232 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.245 0.755 30 H 0.259 0.741 31 H 0.143 0.857 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.153 0.847 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.079 -22.852 2.328 22.970 hybrid contribution -0.677 1.341 -0.066 1.503 sum -0.598 -21.511 2.262 21.638 Atomic orbital electron populations 1.70056 1.07492 1.27924 1.51113 1.25849 0.95786 1.03036 0.94459 0.85408 0.79014 0.78852 0.77852 1.18959 1.20273 1.20290 1.21491 0.93635 0.91867 1.51363 0.92256 1.19138 0.94235 0.91544 0.96502 1.21148 0.94673 0.80633 0.99978 1.45228 1.10608 1.04159 1.77883 1.16087 0.85283 0.80916 0.77778 1.90880 1.13159 1.86705 1.58592 1.42400 1.10756 1.02421 1.76506 1.16858 0.93041 0.83650 0.95764 1.21327 0.95764 0.99142 1.02954 1.21010 1.00138 0.90703 0.96645 1.20501 0.92927 1.01321 1.03179 1.19498 0.92324 0.87766 0.94112 1.20725 1.00311 0.95021 1.05793 1.21877 0.94147 0.99457 0.98529 1.24084 0.91717 0.92559 0.94145 1.86815 1.46900 1.31828 1.57652 0.92556 0.97148 0.97168 0.93532 0.93394 0.75478 0.74069 0.85709 0.82601 0.83459 0.87575 0.88383 0.84718 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 13.29 21.45 0.28 -53.26 16 2 C 0.01 0.41 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -30.01 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.16 6.72 5.61 86.38 0.48 7.20 16 11 N -0.72 -24.39 5.56 -478.53 -2.66 -27.05 16 12 C 0.70 23.74 8.41 179.05 1.51 25.25 16 13 O -0.61 -25.59 13.76 -3.99 -0.05 -25.65 16 14 N -0.67 -17.26 5.32 -317.47 -1.69 -18.95 16 15 C 0.20 5.43 6.29 38.05 0.24 5.66 16 16 C -0.17 -4.88 8.71 22.43 0.20 -4.69 16 17 C -0.07 -1.50 10.01 22.19 0.22 -1.28 16 18 C -0.16 -3.41 10.06 22.48 0.23 -3.19 16 19 C 0.11 2.49 7.03 22.66 0.16 2.64 16 20 C -0.21 -4.83 6.20 -19.32 -0.12 -4.95 16 21 C -0.10 -1.51 7.12 30.83 0.22 -1.29 16 22 C 0.05 0.64 8.00 72.56 0.58 1.22 16 23 O -0.32 -6.51 11.11 -95.21 -1.06 -7.57 16 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.41 11.40 8.49 -92.71 -0.79 10.61 16 30 H 0.42 7.77 8.84 -92.71 -0.82 6.95 16 31 H 0.13 4.14 6.21 -2.92 -0.02 4.12 16 32 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.83 317.83 0.91 -68.92 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.50 Total: 19.35 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.56 Total: -1.00 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.07 Total: -99.26 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.11 Total: -33.22 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.83 0.91 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434132136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.717 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds