Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47356 * 269.30954 * 3 2 1 5 5 H 1.48500 * 109.47022 * 29.31304 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.30730 * 3 2 1 7 7 C 1.37875 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99969 * 354.18835 * 7 2 1 9 9 C 1.50701 * 120.00372 * 174.46703 * 7 2 1 10 10 C 1.53007 * 115.54718 * 294.34778 * 9 7 2 11 11 N 1.46497 * 109.47031 * 295.02233 * 10 9 7 12 12 C 1.34777 * 119.99836 * 181.92401 * 11 10 9 13 13 O 1.21282 * 120.00149 * 5.07650 * 12 11 10 14 14 C 1.50701 * 120.00067 * 185.07051 * 12 11 10 15 15 N 1.46498 * 109.47235 * 184.71351 * 14 12 11 16 16 C 1.35767 * 119.62414 * 90.00343 * 15 14 12 17 17 C 1.35348 * 120.70429 * 179.97438 * 16 15 14 18 18 C 1.40200 * 119.94726 * 0.02562 * 17 16 15 19 19 C 1.36404 * 119.26428 * 0.02562 * 18 17 16 20 20 C 1.34656 * 119.62823 * 269.73155 * 15 14 12 21 21 O 1.22065 * 119.97991 * 359.97438 * 20 15 14 22 22 C 1.52998 * 117.50047 * 148.67998 * 9 7 2 23 23 C 1.52999 * 117.50256 * 80.01935 * 9 7 2 24 24 H 0.97001 * 120.00288 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46898 * 55.02163 * 10 9 7 26 26 H 1.08997 * 109.46980 * 175.02116 * 10 9 7 27 27 H 0.97003 * 120.00539 * 1.92456 * 11 10 9 28 28 H 1.09000 * 109.47193 * 304.71643 * 14 12 11 29 29 H 1.09005 * 109.47082 * 64.71448 * 14 12 11 30 30 H 1.08001 * 119.64868 * 359.97438 * 16 15 14 31 31 H 1.07998 * 120.03077 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.37161 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.34862 * 180.02562 * 19 18 17 34 34 H 1.08999 * 117.49862 * 359.97438 * 22 9 7 35 35 H 1.09000 * 117.50117 * 145.01655 * 22 9 7 36 36 H 1.08997 * 117.49546 * 214.98430 * 23 9 7 37 37 H 1.08997 * 117.49410 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5113 2.0380 -1.4000 5 1 1.4394 2.6568 0.6855 6 1 3.5392 1.4444 0.7147 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1269 0.0957 9 6 3.5062 -1.1971 -0.1253 10 6 4.0576 -0.6912 -1.4599 11 7 3.6482 -1.6001 -2.5334 12 6 4.0536 -1.3743 -3.7988 13 8 4.8310 -0.4738 -4.0350 14 6 3.5410 -2.2408 -4.9202 15 7 4.2104 -1.8695 -6.1693 16 6 5.3668 -2.4881 -6.5206 17 6 6.0032 -2.1625 -7.6699 18 6 5.4684 -1.1765 -8.5109 19 6 4.3071 -0.5554 -8.1558 20 6 3.6689 -0.9224 -6.9587 21 8 2.6258 -0.3792 -6.6319 22 6 4.2715 -2.3222 0.5743 23 6 4.3214 -0.8986 1.1346 24 1 -0.4850 0.8400 -0.0004 25 1 3.6668 0.3065 -1.6597 26 1 5.1459 -0.6523 -1.4120 27 1 3.0853 -2.3644 -2.3336 28 1 3.7474 -3.2870 -4.6944 29 1 2.4658 -2.0975 -5.0277 30 1 5.7833 -3.2481 -5.8761 31 1 6.9227 -2.6613 -7.9385 32 1 5.9707 -0.9111 -9.4293 33 1 3.8794 0.2064 -8.7908 34 1 3.6888 -3.0599 1.1259 35 1 5.1680 -2.7018 0.0840 36 1 5.2507 -0.3421 1.0126 37 1 3.7715 -0.6995 2.0543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435232705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -5.080428 kcal Electronic energy + Delta-G solvation = -21139.097291 eV Core-core repulsion = 17883.144213 eV Total energy + Delta-G solvation = -3255.953078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42067 -39.11076 -37.09698 -36.82878 -34.51113 -33.56801 -32.21230 -29.99401 -28.92895 -26.52667 -25.08160 -23.88660 -22.76431 -21.70857 -20.20260 -19.32507 -17.74272 -17.33662 -17.24105 -16.55220 -16.24864 -15.32140 -15.26589 -15.00610 -14.64663 -14.38548 -14.12314 -13.75358 -13.18618 -12.95654 -12.69776 -12.44265 -12.29340 -12.08018 -11.94660 -11.77727 -11.10777 -10.72764 -10.65338 -10.51692 -10.32305 -9.91261 -9.72384 -9.45459 -9.20923 -8.84261 -8.55428 -8.41707 -7.99296 -6.20155 -4.23938 0.78354 1.87264 2.48063 2.84957 3.28964 3.38884 3.41904 3.49047 3.81347 4.37156 4.43970 4.57367 4.74809 4.80059 5.00506 5.09301 5.14816 5.15330 5.23200 5.37113 5.60908 5.87590 5.90514 5.97881 6.06374 6.13560 6.18820 6.36969 6.42292 6.45308 6.65174 6.86453 6.96177 7.04706 7.06002 7.63101 7.95637 8.09062 8.36837 8.55290 8.80277 9.43305 10.90749 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004821 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.038211 B = 5806.724961 C = 6321.177531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.250 1.250 7 C -0.494 4.494 8 H 0.079 0.921 9 C -0.019 4.019 10 C 0.153 3.847 11 N -0.694 5.694 12 C 0.494 3.506 13 O -0.544 6.544 14 C 0.069 3.931 15 N -0.478 5.478 16 C 0.145 3.855 17 C -0.240 4.240 18 C -0.018 4.018 19 C -0.241 4.241 20 C 0.517 3.483 21 O -0.545 6.545 22 C -0.180 4.180 23 C -0.184 4.184 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.408 0.592 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 -8.343 -12.657 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.119 4.119 3 Si 0.691 3.309 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.530 4.530 8 H 0.097 0.903 9 C -0.020 4.020 10 C 0.030 3.970 11 N -0.344 5.344 12 C 0.278 3.722 13 O -0.422 6.422 14 C -0.057 4.057 15 N -0.188 5.188 16 C 0.018 3.982 17 C -0.263 4.263 18 C -0.040 4.040 19 C -0.263 4.263 20 C 0.319 3.681 21 O -0.426 6.426 22 C -0.217 4.217 23 C -0.222 4.222 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.243 0.757 28 H 0.137 0.863 29 H 0.151 0.849 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.777 -7.209 -12.550 18.660 hybrid contribution 0.179 0.651 0.182 0.699 sum 11.956 -6.557 -12.369 18.410 Atomic orbital electron populations 1.69870 1.06380 1.27430 1.48914 1.24899 0.94505 0.99068 0.93395 0.87080 0.81306 0.83632 0.78858 1.20182 1.21719 1.17339 1.20202 0.86408 0.94621 1.51808 0.90339 1.19610 0.94929 0.99256 0.88192 1.21147 0.96828 0.92774 0.86299 1.45741 1.51860 1.30518 1.06299 1.20544 0.82019 0.85508 0.84163 1.90707 1.35253 1.32679 1.83607 1.21866 1.01511 1.00007 0.82297 1.45081 1.20986 1.33335 1.19371 1.21927 0.85288 0.94868 0.96143 1.20571 1.03919 1.04880 0.96905 1.21391 0.93268 0.91591 0.97753 1.22086 0.99466 1.06325 0.98428 1.17168 0.86186 0.79644 0.85138 1.91000 1.24002 1.52939 1.74645 1.22801 1.01418 0.91908 1.05548 1.23031 1.01201 0.98028 0.99980 0.92336 0.92211 0.93228 0.75666 0.86250 0.84925 0.82315 0.83895 0.84996 0.83593 0.89535 0.90937 0.91122 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 3 Si 0.86 21.58 25.05 -169.99 -4.26 17.32 16 4 H -0.28 -7.17 6.87 56.52 0.39 -6.79 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.25 -5.81 5.80 56.52 0.33 -5.48 16 7 C -0.49 -12.78 9.18 -34.44 -0.32 -13.10 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 10 C 0.15 3.23 5.14 -4.04 -0.02 3.21 16 11 N -0.69 -12.71 5.47 -60.29 -0.33 -13.04 16 12 C 0.49 8.87 7.89 -10.98 -0.09 8.78 16 13 O -0.54 -11.92 16.42 5.56 0.09 -11.83 16 14 C 0.07 0.91 5.82 -5.19 -0.03 0.88 16 15 N -0.48 -6.57 2.09 -121.06 -0.25 -6.82 16 16 C 0.15 1.43 10.28 -16.84 -0.17 1.26 16 17 C -0.24 -2.07 10.01 -39.88 -0.40 -2.47 16 18 C -0.02 -0.18 10.10 -39.51 -0.40 -0.57 16 19 C -0.24 -3.15 9.99 -39.38 -0.39 -3.55 16 20 C 0.52 8.64 7.38 -15.45 -0.11 8.53 16 21 O -0.54 -11.53 16.64 4.86 0.08 -11.45 16 22 C -0.18 -3.29 9.96 -26.70 -0.27 -3.55 16 23 C -0.18 -3.68 8.04 -26.70 -0.21 -3.89 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.06 1.45 4.98 -51.93 -0.26 1.19 16 26 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.41 6.67 8.36 -40.82 -0.34 6.33 16 28 H 0.12 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.13 1.88 7.38 -51.93 -0.38 1.50 16 30 H 0.16 0.99 8.04 -52.49 -0.42 0.57 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -35.97 317.45 -6.60 -42.57 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.85 Total: 6.81 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.64 Total: -2.73 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.19 Total: -45.47 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.26 Total: 17.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.97 -6.60 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435232705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.487 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds