Wall clock time and date at job start Mon Mar 30 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47356 * 269.30954 * 3 2 1 5 5 H 1.48500 * 109.47022 * 29.31304 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.30730 * 3 2 1 7 7 C 1.37875 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99969 * 354.18835 * 7 2 1 9 9 C 1.50701 * 120.00372 * 174.46703 * 7 2 1 10 10 C 1.53007 * 115.54718 * 294.34778 * 9 7 2 11 11 N 1.46497 * 109.47031 * 295.02233 * 10 9 7 12 12 C 1.34777 * 119.99836 * 181.92401 * 11 10 9 13 13 O 1.21282 * 120.00149 * 5.07650 * 12 11 10 14 14 C 1.50701 * 120.00067 * 185.07051 * 12 11 10 15 15 N 1.46498 * 109.47235 * 184.71351 * 14 12 11 16 16 C 1.35767 * 119.62414 * 90.00343 * 15 14 12 17 17 C 1.35348 * 120.70429 * 179.97438 * 16 15 14 18 18 C 1.40200 * 119.94726 * 0.02562 * 17 16 15 19 19 C 1.36404 * 119.26428 * 0.02562 * 18 17 16 20 20 C 1.34656 * 119.62823 * 269.73155 * 15 14 12 21 21 O 1.22065 * 119.97991 * 359.97438 * 20 15 14 22 22 C 1.52998 * 117.50047 * 148.67998 * 9 7 2 23 23 C 1.52999 * 117.50256 * 80.01935 * 9 7 2 24 24 H 0.97001 * 120.00288 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46898 * 55.02163 * 10 9 7 26 26 H 1.08997 * 109.46980 * 175.02116 * 10 9 7 27 27 H 0.97003 * 120.00539 * 1.92456 * 11 10 9 28 28 H 1.09000 * 109.47193 * 304.71643 * 14 12 11 29 29 H 1.09005 * 109.47082 * 64.71448 * 14 12 11 30 30 H 1.08001 * 119.64868 * 359.97438 * 16 15 14 31 31 H 1.07998 * 120.03077 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.37161 * 179.97438 * 18 17 16 33 33 H 1.08001 * 120.34862 * 180.02562 * 19 18 17 34 34 H 1.08999 * 117.49862 * 359.97438 * 22 9 7 35 35 H 1.09000 * 117.50117 * 145.01655 * 22 9 7 36 36 H 1.08997 * 117.49546 * 214.98430 * 23 9 7 37 37 H 1.08997 * 117.49410 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5113 2.0380 -1.4000 5 1 1.4394 2.6568 0.6855 6 1 3.5392 1.4444 0.7147 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1269 0.0957 9 6 3.5062 -1.1971 -0.1253 10 6 4.0576 -0.6912 -1.4599 11 7 3.6482 -1.6001 -2.5334 12 6 4.0536 -1.3743 -3.7988 13 8 4.8310 -0.4738 -4.0350 14 6 3.5410 -2.2408 -4.9202 15 7 4.2104 -1.8695 -6.1693 16 6 5.3668 -2.4881 -6.5206 17 6 6.0032 -2.1625 -7.6699 18 6 5.4684 -1.1765 -8.5109 19 6 4.3071 -0.5554 -8.1558 20 6 3.6689 -0.9224 -6.9587 21 8 2.6258 -0.3792 -6.6319 22 6 4.2715 -2.3222 0.5743 23 6 4.3214 -0.8986 1.1346 24 1 -0.4850 0.8400 -0.0004 25 1 3.6668 0.3065 -1.6597 26 1 5.1459 -0.6523 -1.4120 27 1 3.0853 -2.3644 -2.3336 28 1 3.7474 -3.2870 -4.6944 29 1 2.4658 -2.0975 -5.0277 30 1 5.7833 -3.2481 -5.8761 31 1 6.9227 -2.6613 -7.9385 32 1 5.9707 -0.9111 -9.4293 33 1 3.8794 0.2064 -8.7908 34 1 3.6888 -3.0599 1.1259 35 1 5.1680 -2.7018 0.0840 36 1 5.2507 -0.3421 1.0126 37 1 3.7715 -0.6995 2.0543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435232705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:04 Heat of formation + Delta-G solvation = -31.893029 kcal Electronic energy + Delta-G solvation = -21140.259973 eV Core-core repulsion = 17883.144213 eV Total energy + Delta-G solvation = -3257.115760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.47167 -40.55956 -38.72212 -37.96842 -35.48323 -35.11253 -34.30162 -30.91075 -30.14543 -28.22732 -26.82403 -24.79124 -23.81838 -23.23609 -21.62226 -21.07065 -19.07619 -18.47233 -18.31667 -18.14003 -17.32816 -17.07522 -16.63343 -16.25520 -16.22556 -15.45748 -15.24919 -15.08801 -14.93986 -14.65368 -14.28975 -13.96681 -13.44577 -13.19686 -13.05896 -13.00011 -12.75728 -12.68069 -12.21935 -12.10080 -11.62810 -11.48758 -11.10294 -11.02961 -10.85926 -10.72976 -10.35647 -10.01517 -8.96843 -8.35821 -6.38628 -0.07230 0.94917 1.25991 1.33262 1.39318 1.45809 1.48170 2.23347 2.29725 2.75554 2.97062 3.31857 3.62334 3.74436 3.80653 3.99883 4.03002 4.16208 4.24952 4.29616 4.38818 4.43832 4.48651 4.54399 4.76386 4.92480 5.04212 5.06813 5.19009 5.25883 5.39194 5.43865 5.53920 5.65848 5.68208 6.07770 6.25752 6.52952 6.70493 6.97932 7.14867 7.30660 8.78407 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004821 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.038211 B = 5806.724961 C = 6321.177531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.034 3.966 3 Si 0.910 3.090 4 H -0.299 1.299 5 H -0.296 1.296 6 H -0.219 1.219 7 C -0.473 4.473 8 H 0.051 0.949 9 C -0.047 4.047 10 C 0.160 3.840 11 N -0.692 5.692 12 C 0.492 3.508 13 O -0.587 6.587 14 C 0.074 3.926 15 N -0.480 5.480 16 C 0.133 3.867 17 C -0.229 4.229 18 C 0.011 3.989 19 C -0.287 4.287 20 C 0.492 3.508 21 O -0.619 6.619 22 C -0.145 4.145 23 C -0.185 4.185 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.417 0.583 28 H 0.182 0.818 29 H 0.117 0.883 30 H 0.204 0.796 31 H 0.189 0.811 32 H 0.172 0.828 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.215 -10.802 -13.252 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.165 4.165 3 Si 0.737 3.263 4 H -0.226 1.226 5 H -0.223 1.223 6 H -0.141 1.141 7 C -0.511 4.511 8 H 0.069 0.931 9 C -0.048 4.048 10 C 0.036 3.964 11 N -0.343 5.343 12 C 0.278 3.722 13 O -0.468 6.468 14 C -0.051 4.051 15 N -0.189 5.189 16 C 0.007 3.993 17 C -0.251 4.251 18 C -0.011 4.011 19 C -0.308 4.308 20 C 0.298 3.702 21 O -0.507 6.507 22 C -0.182 4.182 23 C -0.223 4.223 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.254 0.746 28 H 0.199 0.801 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.206 0.794 32 H 0.190 0.810 33 H 0.160 0.840 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.922 -9.731 -13.136 22.820 hybrid contribution -0.953 1.267 0.307 1.615 sum 14.970 -8.464 -12.829 21.455 Atomic orbital electron populations 1.69988 1.07895 1.27714 1.52262 1.25535 0.94877 1.01894 0.94158 0.86358 0.81639 0.80681 0.77613 1.22635 1.22281 1.14058 1.20409 0.88989 0.92900 1.48759 0.93087 1.19433 0.92551 1.03472 0.89378 1.20903 0.97473 0.91475 0.86588 1.45710 1.51963 1.30370 1.06253 1.21297 0.80978 0.85231 0.84687 1.90678 1.37348 1.34546 1.84212 1.21967 1.00435 1.02096 0.80604 1.45120 1.22117 1.32862 1.18793 1.22832 0.83749 0.95262 0.97467 1.21227 1.04654 1.03604 0.95644 1.21910 0.91011 0.89572 0.98616 1.22074 1.01808 1.08698 0.98244 1.17793 0.85920 0.80009 0.86498 1.90938 1.27159 1.56055 1.76560 1.22863 1.01349 0.90842 1.03139 1.23082 1.01249 0.99839 0.98101 0.92773 0.95990 0.91564 0.74598 0.80094 0.86500 0.77944 0.79390 0.81047 0.84050 0.89323 0.87585 0.88984 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.03 1.94 5.47 84.66 0.46 2.41 16 3 Si 0.91 45.58 25.05 68.60 1.72 47.30 16 4 H -0.30 -16.00 6.87 99.48 0.68 -15.31 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 6 H -0.22 -9.68 5.80 99.48 0.58 -9.10 16 7 C -0.47 -24.64 9.18 25.60 0.23 -24.41 16 8 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 9 C -0.05 -1.95 0.84 -52.93 -0.04 -1.99 16 10 C 0.16 6.55 5.14 86.38 0.44 7.00 16 11 N -0.69 -24.59 5.47 -463.06 -2.53 -27.12 16 12 C 0.49 17.27 7.89 87.66 0.69 17.97 16 13 O -0.59 -25.61 16.42 -3.03 -0.05 -25.66 16 14 C 0.07 1.87 5.82 85.63 0.50 2.37 16 15 N -0.48 -12.59 2.09 -655.06 -1.37 -13.96 16 16 C 0.13 2.07 10.28 83.42 0.86 2.93 16 17 C -0.23 -2.82 10.01 22.08 0.22 -2.60 16 18 C 0.01 0.17 10.10 22.32 0.23 0.39 16 19 C -0.29 -7.55 9.99 22.40 0.22 -7.33 16 20 C 0.49 17.05 7.38 84.82 0.63 17.68 16 21 O -0.62 -28.42 16.64 -5.53 -0.09 -28.51 16 22 C -0.15 -4.75 9.96 30.62 0.30 -4.44 16 23 C -0.18 -6.78 8.04 30.62 0.25 -6.53 16 24 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.02 1.07 4.98 -2.39 -0.01 1.06 16 26 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 27 H 0.42 13.07 8.36 -92.71 -0.78 12.30 16 28 H 0.18 2.18 8.01 -2.39 -0.02 2.16 16 29 H 0.12 3.42 7.38 -2.38 -0.02 3.40 16 30 H 0.20 1.27 8.04 -2.91 -0.02 1.25 16 31 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 34 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -86.11 317.45 3.13 -82.98 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.16 Total: 19.11 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.99 Total: 3.44 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -3.60 Total: -98.67 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.14 Total: -54.18 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.72 Total: 47.30 kcal Total: -86.11 3.13 -82.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435232705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.088 kcal (2) G-P(sol) polarization free energy of solvation -86.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds