Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99478 * 163.07905 * 7 2 1 9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1 10 10 C 1.46921 * 120.63017 * 151.83323 * 9 7 2 11 11 C 1.53195 * 108.77447 * 126.36882 * 10 9 7 12 12 C 1.53036 * 109.31460 * 54.63392 * 11 10 9 13 13 C 1.53039 * 109.52376 * 298.63934 * 12 11 10 14 14 H 1.09001 * 109.50363 * 301.40731 * 13 12 11 15 15 C 1.50707 * 109.49598 * 181.31051 * 13 12 11 16 16 C 1.38227 * 120.00064 * 299.72910 * 15 13 12 17 17 C 1.38241 * 120.00067 * 179.74313 * 16 15 13 18 18 C 1.38234 * 119.99572 * 0.54962 * 17 16 15 19 19 N 1.48020 * 119.99763 * 179.72129 * 18 17 16 20 20 O 1.21801 * 119.99663 * 179.97438 * 19 18 17 21 21 O 1.21800 * 120.00277 * 359.97438 * 19 18 17 22 22 C 1.38237 * 120.00075 * 359.70328 * 18 17 16 23 23 C 1.38233 * 120.00013 * 0.02562 * 22 18 17 24 24 C 1.46926 * 120.62731 * 331.80308 * 9 7 2 25 25 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58667 * 6.57753 * 10 9 7 27 27 H 1.09006 * 109.58085 * 246.15246 * 10 9 7 28 28 H 1.08997 * 109.49269 * 294.67371 * 11 10 9 29 29 H 1.08999 * 109.49030 * 174.58575 * 11 10 9 30 30 H 1.08992 * 109.45954 * 58.65210 * 12 11 10 31 31 H 1.09001 * 109.46031 * 178.63031 * 12 11 10 32 32 H 1.07997 * 120.00216 * 359.97438 * 16 15 13 33 33 H 1.07997 * 120.00169 * 180.27311 * 17 16 15 34 34 H 1.07998 * 119.99994 * 179.97438 * 22 18 17 35 35 H 1.08000 * 120.00050 * 179.97438 * 23 22 18 36 36 H 1.08997 * 109.59142 * 353.42466 * 24 9 7 37 37 H 1.09009 * 109.58156 * 113.84883 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3623 0.3460 10 6 1.8141 -3.6529 -0.1979 11 6 2.0683 -4.6169 0.9653 12 6 0.8133 -4.7005 1.8370 13 6 0.4988 -3.3186 2.4146 14 1 1.3486 -2.9666 2.9994 15 6 -0.7185 -3.4082 3.2986 16 6 -1.9259 -3.8272 2.7720 17 6 -3.0412 -3.9144 3.5841 18 6 -2.9516 -3.5717 4.9203 19 7 -4.1473 -3.6592 5.7885 20 8 -4.0682 -3.3577 6.9660 21 8 -5.2101 -4.0326 5.3255 22 6 -1.7454 -3.1477 5.4458 23 6 -0.6288 -3.0658 4.6349 24 6 0.2265 -2.3400 1.2682 25 1 -0.4849 0.8401 -0.0004 26 1 2.7345 -3.5133 -0.7647 27 1 1.0402 -4.0609 -0.8482 28 1 2.9034 -4.2527 1.5636 29 1 2.3053 -5.6058 0.5729 30 1 -0.0269 -5.0411 1.2321 31 1 0.9833 -5.4044 2.6517 32 1 -1.9971 -4.0900 1.7269 33 1 -3.9835 -4.2460 3.1737 34 1 -1.6755 -2.8795 6.4896 35 1 0.3135 -2.7342 5.0454 36 1 0.0994 -1.3343 1.6687 37 1 -0.6768 -2.6411 0.7374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451545965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 16.935450 kcal Electronic energy + Delta-G solvation = -21157.976986 eV Core-core repulsion = 17902.978588 eV Total energy + Delta-G solvation = -3254.998398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.25621 -40.94372 -38.86437 -37.68761 -35.33911 -33.91665 -32.39119 -31.85617 -30.76908 -27.35975 -27.13343 -24.41538 -23.99811 -23.84775 -22.26069 -20.64765 -20.33862 -19.73674 -18.70011 -18.62427 -17.15920 -16.73005 -16.28734 -15.83219 -15.66582 -15.27388 -14.88904 -14.79948 -14.43213 -14.25865 -13.93275 -13.78063 -13.00951 -12.94736 -12.76264 -12.63723 -12.56114 -12.34912 -12.31584 -12.28352 -12.03204 -11.85025 -11.62684 -11.28063 -11.24079 -10.58729 -10.34153 -10.24958 -8.69038 -7.91036 -5.35694 -1.21157 0.02793 0.32099 0.38659 1.43758 1.47457 1.56495 2.31522 2.49073 3.23155 3.39984 3.44419 3.55062 3.84995 3.88366 4.02885 4.16768 4.20298 4.28818 4.36880 4.49045 4.68530 4.71740 4.80680 4.84373 4.88975 5.04001 5.11928 5.13792 5.18010 5.25737 5.35949 5.45015 5.52599 5.54774 5.65363 5.73746 6.36619 6.50679 7.12595 7.83941 8.34082 9.14467 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004744 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.773273 B = 5900.637305 C = 6695.873622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.124 4.124 12 C -0.096 4.096 13 C -0.074 4.074 14 H 0.079 0.921 15 C -0.007 4.007 16 C -0.113 4.113 17 C -0.050 4.050 18 C -0.074 4.074 19 N 0.035 4.965 20 O -0.178 6.178 21 O -0.187 6.187 22 C -0.048 4.048 23 C -0.115 4.115 24 C 0.191 3.809 25 H 0.249 0.751 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.051 0.949 37 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -10.065 7.973 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.163 4.163 12 C -0.134 4.134 13 C -0.094 4.094 14 H 0.097 0.903 15 C -0.008 4.008 16 C -0.132 4.132 17 C -0.069 4.069 18 C -0.157 4.157 19 N 0.549 4.451 20 O -0.393 6.393 21 O -0.399 6.399 22 C -0.067 4.067 23 C -0.134 4.134 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 0.350 -9.899 7.524 12.438 hybrid contribution -0.295 1.246 -0.077 1.283 sum 0.055 -8.653 7.447 11.416 Atomic orbital electron populations 1.70160 1.06558 1.25737 1.55347 1.25718 0.95937 1.01258 1.01184 0.85320 0.78856 0.80249 0.76737 1.18982 1.22133 1.21757 1.19532 0.92897 0.85999 1.40789 0.91586 1.44311 1.36187 1.02500 1.50257 1.21143 0.97255 0.85987 0.94580 1.21894 0.97579 0.99457 0.97351 1.21451 0.98277 0.94393 0.99235 1.20932 0.94071 0.98301 0.96125 0.90262 1.20572 0.95539 0.90445 0.94293 1.21204 0.90890 1.00172 1.00935 1.21151 1.01182 0.94615 0.89957 1.21248 0.85988 1.16352 0.92102 1.43874 1.02796 0.97018 1.01381 1.94491 1.91879 1.52311 1.00571 1.94507 1.17446 1.49610 1.78310 1.21213 0.89226 0.93721 1.02562 1.21386 0.99338 1.00215 0.92412 1.20585 0.88067 0.96889 0.87975 0.94174 0.93059 0.96628 0.92423 0.89678 0.91909 0.90406 0.83132 0.82062 0.81500 0.81633 0.93024 0.97661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.89 11.20 21.65 0.24 -52.65 16 2 C -0.05 -2.42 4.92 84.86 0.42 -2.00 16 3 Si 0.96 43.22 29.59 68.60 2.03 45.25 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.26 -13.66 9.58 84.03 0.81 -12.86 16 8 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 9 N -0.61 -28.23 2.99 -699.15 -2.09 -30.32 16 10 C 0.14 5.05 6.52 86.36 0.56 5.61 16 11 C -0.12 -3.45 6.08 30.67 0.19 -3.27 16 12 C -0.10 -2.49 4.96 30.62 0.15 -2.34 16 13 C -0.07 -2.28 2.51 -11.47 -0.03 -2.31 16 14 H 0.08 2.47 7.88 -2.39 -0.02 2.45 16 15 C -0.01 -0.19 4.79 -19.87 -0.10 -0.29 16 16 C -0.11 -2.89 8.67 22.27 0.19 -2.70 16 17 C -0.05 -1.23 9.56 22.27 0.21 -1.02 16 18 C -0.07 -1.93 6.85 36.37 0.25 -1.69 16 19 N 0.04 1.04 4.45 -46.46 -0.21 0.84 16 20 O -0.18 -5.38 18.45 18.89 0.35 -5.03 16 21 O -0.19 -5.80 18.45 18.89 0.35 -5.45 16 22 C -0.05 -1.10 9.56 22.27 0.21 -0.89 16 23 C -0.12 -2.62 9.67 22.27 0.22 -2.41 16 24 C 0.19 8.17 4.47 86.35 0.39 8.55 16 25 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 27 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.15 3.69 7.08 -2.91 -0.02 3.67 16 33 H 0.16 3.49 7.61 -2.91 -0.02 3.47 16 34 H 0.17 3.14 7.61 -2.91 -0.02 3.12 16 35 H 0.17 3.04 7.95 -2.91 -0.02 3.01 16 36 H 0.05 2.60 6.06 -2.39 -0.01 2.59 16 37 H 0.01 0.24 7.21 -2.38 -0.02 0.23 16 Total: -1.00 -61.78 310.13 5.21 -56.57 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.07 Total: 8.39 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 3.47 Total: -17.60 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.06 Total: -82.13 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.70 Total: -10.48 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -61.78 5.21 -56.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451545965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.506 kcal (2) G-P(sol) polarization free energy of solvation -61.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds