Wall clock time and date at job start Mon Mar 30 2020 02:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.39668 * 120.00181 * 180.02562 * 10 9 7 12 12 C 1.38907 * 120.07584 * 359.71907 * 11 10 9 13 13 C 1.38108 * 119.92754 * 179.77093 * 12 11 10 14 14 C 1.38283 * 120.07138 * 0.50866 * 13 12 11 15 15 C 1.50700 * 119.92567 * 179.72344 * 14 13 12 16 16 N 1.46506 * 109.47017 * 270.02547 * 15 14 13 17 17 C 1.47088 * 125.56224 * 89.99756 * 16 15 14 18 18 C 1.54084 * 103.78137 * 179.97438 * 17 16 15 19 19 O 1.45706 * 104.00678 * 0.02562 * 18 17 16 20 20 C 1.33775 * 109.47604 * 359.75529 * 19 18 17 21 21 O 1.21505 * 123.07344 * 180.24393 * 20 19 18 22 22 C 1.38292 * 120.15211 * 359.74911 * 14 13 12 23 23 C 1.38103 * 120.06781 * 359.97438 * 22 14 13 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 28 28 H 1.08004 * 120.03686 * 0.02562 * 12 11 10 29 29 H 1.07998 * 119.96672 * 180.25929 * 13 12 11 30 30 H 1.08997 * 109.47151 * 30.02383 * 15 14 13 31 31 H 1.08997 * 109.47346 * 150.02750 * 15 14 13 32 32 H 1.09000 * 110.56822 * 298.55366 * 17 16 15 33 33 H 1.09003 * 110.56362 * 61.40712 * 17 16 15 34 34 H 1.08998 * 110.52041 * 118.62600 * 18 17 16 35 35 H 1.08998 * 110.53158 * 241.23511 * 18 17 16 36 36 H 1.07994 * 119.96192 * 179.97438 * 22 14 13 37 37 H 1.08003 * 120.03201 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7375 -4.9295 0.0000 12 6 0.3721 -5.1851 0.0053 13 6 -0.0849 -6.4884 0.0000 14 6 0.8151 -7.5383 0.0000 15 6 0.3128 -8.9591 0.0004 16 7 0.1498 -9.4190 1.3819 17 6 -1.0734 -9.2886 2.1882 18 6 -0.6937 -9.9290 3.5373 19 8 0.6894 -10.3481 3.3519 20 6 1.0895 -10.0315 2.1152 21 8 2.2038 -10.2743 1.6963 22 6 2.1751 -7.2874 0.0000 23 6 2.6387 -5.9865 -0.0004 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4354 0.0009 28 1 -0.3313 -4.3656 0.0095 29 1 -1.1463 -6.6879 -0.0001 30 1 -0.6474 -9.0052 -0.5134 31 1 1.0308 -9.5985 -0.5130 32 1 -1.3335 -8.2387 2.3225 33 1 -1.8970 -9.8319 1.7250 34 1 -0.7661 -9.1969 4.3416 35 1 -1.3311 -10.7882 3.7455 36 1 2.8752 -8.1097 0.0004 37 1 3.7009 -5.7913 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496701902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:42 Heat of formation + Delta-G solvation = -45.017110 kcal Electronic energy + Delta-G solvation = -20458.245439 eV Core-core repulsion = 17200.560576 eV Total energy + Delta-G solvation = -3257.684862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56841 -38.99499 -37.17772 -36.08742 -34.70159 -32.73677 -30.83266 -30.45418 -29.25784 -27.23161 -25.15550 -23.84395 -23.07100 -21.94944 -21.10479 -20.16089 -17.50694 -17.47404 -17.23257 -16.85349 -15.89731 -15.35386 -15.09083 -14.87625 -14.33785 -14.22037 -14.18258 -13.69053 -13.27526 -13.19449 -12.96873 -12.87209 -12.57325 -12.10434 -11.87270 -11.76578 -11.41809 -10.96798 -10.92976 -10.81572 -10.61967 -10.48824 -10.16718 -9.46704 -9.45887 -8.98877 -8.59528 -8.44927 -6.62218 -6.25987 -4.31477 1.83944 1.94469 2.61219 2.73898 3.21135 3.25722 3.27798 3.39248 3.97070 4.20961 4.39178 4.43253 4.51902 4.54019 4.97783 5.04730 5.11343 5.13118 5.30425 5.35530 5.45938 5.56285 5.66912 5.88916 6.16596 6.29471 6.34115 6.50357 6.83753 6.91420 7.05365 7.06796 7.30705 7.35541 7.40364 7.60927 7.88964 8.00890 8.22296 8.60067 8.83754 9.35166 10.84562 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033022 B = 0.003215 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.710516 B = 8708.394983 C = 8936.266190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.726 5.726 11 C 0.242 3.758 12 C -0.208 4.208 13 C -0.051 4.051 14 C -0.210 4.210 15 C 0.201 3.799 16 N -0.623 5.623 17 C 0.063 3.937 18 C 0.042 3.958 19 O -0.334 6.334 20 C 0.642 3.358 21 O -0.524 6.524 22 C -0.042 4.042 23 C -0.220 4.220 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.392 0.608 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -17.829 3.091 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.132 3.868 12 C -0.231 4.231 13 C -0.070 4.070 14 C -0.214 4.214 15 C 0.082 3.918 16 N -0.370 5.370 17 C -0.060 4.060 18 C -0.034 4.034 19 O -0.244 6.244 20 C 0.396 3.604 21 O -0.409 6.409 22 C -0.062 4.062 23 C -0.243 4.243 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.225 0.775 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.974 -17.718 3.040 18.652 hybrid contribution 0.530 1.277 0.060 1.384 sum -4.444 -16.441 3.100 17.311 Atomic orbital electron populations 1.69931 1.06088 1.27513 1.49163 1.24925 0.94953 0.99472 0.94557 0.86458 0.79454 0.82152 0.78806 1.20024 1.20993 1.20024 1.21164 0.93361 0.90437 1.52993 0.92011 1.19126 0.88667 0.82660 0.96620 1.45605 1.09712 1.02590 1.76876 1.18143 0.92932 0.85604 0.90171 1.20705 0.94092 0.97029 1.11251 1.20619 0.98062 0.91835 0.96525 1.19566 0.93830 0.94162 1.13866 1.20039 1.01755 0.92290 0.77707 1.48328 1.12632 1.60740 1.15330 1.22795 0.89172 1.03347 0.90710 1.24255 0.79882 1.01022 0.98197 1.87265 1.29878 1.76330 1.30929 1.18516 0.84997 0.77417 0.79496 1.91019 1.18915 1.59425 1.71496 1.20690 0.94646 0.95776 0.95083 1.20544 0.98503 0.91975 1.13289 0.92369 0.96075 0.96137 0.77467 0.85745 0.87100 0.89611 0.89314 0.88838 0.89174 0.87737 0.87853 0.86630 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.27 4.67 -5.19 -0.02 6.25 16 10 N -0.73 -15.38 5.73 -59.80 -0.34 -15.72 16 11 C 0.24 4.66 6.65 -83.79 -0.56 4.10 16 12 C -0.21 -3.76 9.31 -39.38 -0.37 -4.13 16 13 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 14 C -0.21 -2.98 5.47 -104.59 -0.57 -3.55 16 15 C 0.20 2.24 6.14 -5.19 -0.03 2.21 16 16 N -0.62 -7.01 2.95 -180.23 -0.53 -7.54 16 17 C 0.06 0.44 7.69 -3.16 -0.02 0.42 16 18 C 0.04 0.28 8.23 37.72 0.31 0.59 16 19 O -0.33 -4.14 11.09 -37.84 -0.42 -4.56 16 20 C 0.64 9.25 8.85 53.71 0.48 9.72 16 21 O -0.52 -9.51 17.54 -19.11 -0.34 -9.84 16 22 C -0.04 -0.67 9.69 -39.61 -0.38 -1.06 16 23 C -0.22 -3.79 9.90 -39.38 -0.39 -4.18 16 24 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.57 7.96 -51.93 -0.41 0.16 16 26 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 27 H 0.39 7.78 8.33 -40.82 -0.34 7.44 16 28 H 0.12 2.40 6.73 -52.48 -0.35 2.05 16 29 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -32.42 322.02 -8.26 -40.68 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.84 Total: 4.91 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.36 Total: -3.98 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.14 Total: -47.73 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.75 Total: -14.41 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.42 -8.26 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496701902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.334 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds