Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.39668 * 120.00181 * 180.02562 * 10 9 7 12 12 C 1.38907 * 120.07584 * 359.71907 * 11 10 9 13 13 C 1.38108 * 119.92754 * 179.77093 * 12 11 10 14 14 C 1.38283 * 120.07138 * 0.50866 * 13 12 11 15 15 C 1.50700 * 119.92567 * 179.72344 * 14 13 12 16 16 N 1.46506 * 109.47017 * 270.02547 * 15 14 13 17 17 C 1.47088 * 125.56224 * 89.99756 * 16 15 14 18 18 C 1.54084 * 103.78137 * 179.97438 * 17 16 15 19 19 O 1.45706 * 104.00678 * 0.02562 * 18 17 16 20 20 C 1.33775 * 109.47604 * 359.75529 * 19 18 17 21 21 O 1.21505 * 123.07344 * 180.24393 * 20 19 18 22 22 C 1.38292 * 120.15211 * 359.74911 * 14 13 12 23 23 C 1.38103 * 120.06781 * 359.97438 * 22 14 13 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 28 28 H 1.08004 * 120.03686 * 0.02562 * 12 11 10 29 29 H 1.07998 * 119.96672 * 180.25929 * 13 12 11 30 30 H 1.08997 * 109.47151 * 30.02383 * 15 14 13 31 31 H 1.08997 * 109.47346 * 150.02750 * 15 14 13 32 32 H 1.09000 * 110.56822 * 298.55366 * 17 16 15 33 33 H 1.09003 * 110.56362 * 61.40712 * 17 16 15 34 34 H 1.08998 * 110.52041 * 118.62600 * 18 17 16 35 35 H 1.08998 * 110.53158 * 241.23511 * 18 17 16 36 36 H 1.07994 * 119.96192 * 179.97438 * 22 14 13 37 37 H 1.08003 * 120.03201 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7375 -4.9295 0.0000 12 6 0.3721 -5.1851 0.0053 13 6 -0.0849 -6.4884 0.0000 14 6 0.8151 -7.5383 0.0000 15 6 0.3128 -8.9591 0.0004 16 7 0.1498 -9.4190 1.3819 17 6 -1.0734 -9.2886 2.1882 18 6 -0.6937 -9.9290 3.5373 19 8 0.6894 -10.3481 3.3519 20 6 1.0895 -10.0315 2.1152 21 8 2.2038 -10.2743 1.6963 22 6 2.1751 -7.2874 0.0000 23 6 2.6387 -5.9865 -0.0004 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4354 0.0009 28 1 -0.3313 -4.3656 0.0095 29 1 -1.1463 -6.6879 -0.0001 30 1 -0.6474 -9.0052 -0.5134 31 1 1.0308 -9.5985 -0.5130 32 1 -1.3335 -8.2387 2.3225 33 1 -1.8970 -9.8319 1.7250 34 1 -0.7661 -9.1969 4.3416 35 1 -1.3311 -10.7882 3.7455 36 1 2.8752 -8.1097 0.0004 37 1 3.7009 -5.7913 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496701902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -66.310552 kcal Electronic energy + Delta-G solvation = -20459.168792 eV Core-core repulsion = 17200.560576 eV Total energy + Delta-G solvation = -3258.608215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.44751 -40.33724 -38.24895 -37.34660 -36.04981 -34.60153 -32.02086 -31.73168 -30.29297 -28.83713 -26.50502 -24.95296 -24.36503 -23.28266 -22.34247 -21.40876 -19.15211 -18.33227 -18.28335 -17.75276 -17.48632 -17.00753 -16.37048 -16.12054 -15.70190 -15.15025 -14.98922 -14.93541 -14.91068 -14.65708 -14.27085 -13.95306 -13.88810 -13.39749 -13.19993 -12.93230 -12.81666 -12.72586 -12.50783 -12.17264 -11.74914 -11.69395 -11.57188 -11.46342 -11.06305 -10.54976 -9.86901 -9.78427 -8.33004 -8.16945 -6.46789 0.59800 0.60731 1.39679 1.42202 1.50451 1.64502 1.73152 2.32340 2.68090 2.87355 3.01503 3.08197 3.44489 3.76227 3.95874 4.08175 4.12305 4.19889 4.46143 4.56141 4.58190 4.69764 4.76084 4.83192 4.85619 4.96973 5.06561 5.21829 5.27389 5.45644 5.47287 5.53529 5.57237 5.79036 5.85136 6.12827 6.41611 6.45414 6.72605 7.00036 7.10164 7.26594 8.78455 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033022 B = 0.003215 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.710516 B = 8708.394983 C = 8936.266190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.274 3.726 10 N -0.736 5.736 11 C 0.212 3.788 12 C -0.226 4.226 13 C -0.039 4.039 14 C -0.192 4.192 15 C 0.201 3.799 16 N -0.619 5.619 17 C 0.060 3.940 18 C 0.035 3.965 19 O -0.355 6.355 20 C 0.634 3.366 21 O -0.576 6.576 22 C -0.052 4.052 23 C -0.221 4.221 24 H 0.270 0.730 25 H -0.006 1.006 26 H -0.007 1.007 27 H 0.395 0.605 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -18.945 3.314 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.600 4.600 8 H 0.086 0.914 9 C 0.151 3.849 10 N -0.361 5.361 11 C 0.104 3.896 12 C -0.249 4.249 13 C -0.058 4.058 14 C -0.195 4.195 15 C 0.081 3.919 16 N -0.365 5.365 17 C -0.062 4.062 18 C -0.038 4.038 19 O -0.265 6.265 20 C 0.388 3.612 21 O -0.465 6.465 22 C -0.071 4.071 23 C -0.244 4.244 24 H 0.079 0.921 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.229 0.771 28 H 0.122 0.878 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.281 -18.883 3.283 20.169 hybrid contribution 0.810 1.436 0.044 1.649 sum -5.472 -17.447 3.327 18.585 Atomic orbital electron populations 1.70053 1.07696 1.28606 1.49845 1.25878 0.95842 1.03251 0.93854 0.85339 0.78154 0.77396 0.79159 1.19195 1.20404 1.19231 1.21559 0.93910 0.91462 1.53095 0.91415 1.18564 0.88622 0.83773 0.93957 1.45250 1.09068 1.02594 1.79218 1.18388 0.93913 0.85057 0.92193 1.20796 0.93419 0.98244 1.12456 1.20932 1.00171 0.90079 0.94605 1.19967 0.92997 0.96017 1.10545 1.20162 1.03844 0.89685 0.78170 1.48340 1.13466 1.59410 1.15313 1.23168 0.88221 1.04513 0.90295 1.24741 0.77495 1.02954 0.98654 1.87224 1.33004 1.76382 1.29889 1.18771 0.84844 0.77430 0.80110 1.90965 1.21191 1.61547 1.72785 1.20905 0.95944 0.95156 0.95104 1.20665 0.98746 0.92072 1.12892 0.92106 0.98823 0.98934 0.77075 0.87832 0.83154 0.85378 0.89719 0.88175 0.85396 0.86357 0.84480 0.86210 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.98 42.54 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 8 H 0.07 3.55 7.60 -2.91 -0.02 3.53 16 9 C 0.27 14.43 4.67 85.63 0.40 14.83 16 10 N -0.74 -32.63 5.73 -343.12 -1.96 -34.59 16 11 C 0.21 8.37 6.65 38.21 0.25 8.62 16 12 C -0.23 -8.29 9.31 22.40 0.21 -8.08 16 13 C -0.04 -1.05 9.69 22.25 0.22 -0.84 16 14 C -0.19 -5.00 5.47 -19.84 -0.11 -5.11 16 15 C 0.20 3.78 6.14 85.63 0.53 4.31 16 16 N -0.62 -12.03 2.95 -955.83 -2.82 -14.84 16 17 C 0.06 0.57 7.69 86.63 0.67 1.24 16 18 C 0.04 0.34 8.23 72.35 0.60 0.94 16 19 O -0.35 -8.24 11.09 -47.35 -0.53 -8.76 16 20 C 0.63 17.45 8.85 129.91 1.15 18.60 16 21 O -0.58 -20.99 17.54 19.67 0.35 -20.65 16 22 C -0.05 -1.60 9.69 22.25 0.22 -1.39 16 23 C -0.22 -7.67 9.90 22.40 0.22 -7.45 16 24 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 25 H -0.01 -0.34 7.96 -2.39 -0.02 -0.36 16 26 H -0.01 -0.41 7.94 -2.38 -0.02 -0.42 16 27 H 0.40 16.38 8.33 -92.71 -0.77 15.61 16 28 H 0.10 4.20 6.73 -2.91 -0.02 4.18 16 29 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.13 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -74.15 322.02 2.71 -71.45 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.31 Total: 20.04 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.04 Total: -3.99 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.50 Total: -102.66 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.18 Total: -29.41 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.15 2.71 -71.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496701902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.137 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds