Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47245 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00141 * 3 2 1 6 6 H 1.48494 * 109.47084 * 150.00154 * 3 2 1 7 7 C 1.37880 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45818 * 180.02562 * 9 7 2 11 11 C 1.53193 * 109.31330 * 178.61753 * 10 9 7 12 12 N 1.46924 * 108.77704 * 54.63526 * 11 10 9 13 13 C 1.34774 * 120.63313 * 126.37054 * 12 11 10 14 14 O 1.21588 * 119.99918 * 3.90086 * 13 12 11 15 15 C 1.47530 * 120.00212 * 183.90305 * 13 12 11 16 16 C 1.39992 * 120.59380 * 306.89963 * 15 13 12 17 17 C 1.38336 * 118.34512 * 180.02562 * 16 15 13 18 18 C 1.38353 * 119.46399 * 359.97438 * 17 16 15 19 19 N 1.31887 * 121.18077 * 0.02562 * 18 17 16 20 20 C 1.32230 * 121.79978 * 359.97438 * 19 18 17 21 21 O 1.35426 * 119.79411 * 180.02562 * 20 19 18 22 22 C 1.46929 * 118.73733 * 306.64584 * 12 11 10 23 23 C 1.52758 * 109.01042 * 53.30634 * 22 12 11 24 24 H 0.96995 * 120.00072 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.45313 * 299.97315 * 9 7 2 26 26 H 1.08997 * 109.50367 * 58.66364 * 10 9 7 27 27 H 1.09004 * 109.52707 * 298.58379 * 10 9 7 28 28 H 1.08993 * 109.58586 * 294.84462 * 11 10 9 29 29 H 1.09004 * 109.70514 * 174.49128 * 11 10 9 30 30 H 1.07997 * 120.82391 * 0.04297 * 16 15 13 31 31 H 1.08005 * 120.26523 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.40890 * 180.28466 * 18 17 16 33 33 H 0.96701 * 114.00480 * 90.00609 * 21 20 19 34 34 H 1.09004 * 109.58894 * 173.14240 * 22 12 11 35 35 H 1.09004 * 109.58718 * 293.56683 * 22 12 11 36 36 H 1.09001 * 109.56826 * 185.55488 * 23 22 12 37 37 H 1.09002 * 109.35950 * 65.50117 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0343 12 7 0.5224 -5.0089 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 1.2484 -6.9869 -1.7852 15 6 -0.3925 -6.0021 -3.1216 16 6 -1.7639 -5.7771 -2.9526 17 6 -2.5695 -5.7566 -4.0770 18 6 -2.0034 -5.9563 -5.3236 19 7 -0.7085 -6.1666 -5.4597 20 6 0.1059 -6.1961 -4.4184 21 8 1.4293 -6.4148 -4.6051 22 6 -0.4164 -3.8886 -1.2319 23 6 0.3700 -2.5792 -1.2494 24 1 -0.4850 0.8400 -0.0004 25 1 0.6253 -2.5570 0.8900 26 1 2.8884 -3.5914 0.8770 27 1 2.8562 -3.6195 -0.9027 28 1 0.9374 -5.0712 0.9777 29 1 2.1737 -5.8190 -0.0639 30 1 -2.1824 -5.6231 -1.9690 31 1 -3.6318 -5.5860 -3.9825 32 1 -2.6324 -5.9355 -6.2012 33 1 1.9463 -5.6086 -4.7383 34 1 -0.9668 -3.9952 -2.1668 35 1 -1.1135 -3.8818 -0.3939 36 1 -0.3225 -1.7375 -1.2606 37 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541979467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -37.988097 kcal Electronic energy + Delta-G solvation = -21657.589099 eV Core-core repulsion = 18400.209038 eV Total energy + Delta-G solvation = -3257.380062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91037 -39.17322 -37.21776 -36.73498 -33.74154 -32.87413 -31.25075 -30.46754 -30.00947 -26.46769 -24.66573 -23.56505 -22.80888 -22.27444 -20.31231 -19.03677 -18.52762 -17.25821 -16.89761 -16.39632 -16.20592 -15.65114 -14.86355 -14.60695 -14.50998 -13.86567 -13.51053 -13.34099 -13.08093 -12.90063 -12.76090 -12.47714 -12.29357 -11.77506 -11.73215 -11.38033 -10.99639 -10.71805 -10.48573 -10.22299 -10.07878 -9.91470 -9.67065 -9.40164 -9.26455 -9.04748 -8.94672 -8.45450 -8.10889 -6.10182 -4.16234 0.65497 0.98694 2.82766 3.20145 3.23670 3.31186 3.34528 3.46590 3.69081 4.35368 4.47220 4.64449 4.67649 4.86950 5.19405 5.24624 5.29779 5.48299 5.71271 5.76789 5.82249 5.88684 5.96061 6.06743 6.19983 6.26998 6.36434 6.56044 6.79495 6.94369 7.03024 7.17506 7.40809 7.57974 7.71732 7.78822 7.82943 7.95520 8.32492 8.40460 8.87192 9.49334 10.95459 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.005068 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.351373 B = 5523.612753 C = 5979.729754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.592 5.592 13 C 0.559 3.441 14 O -0.535 6.535 15 C -0.183 4.183 16 C -0.029 4.029 17 C -0.189 4.189 18 C 0.137 3.863 19 N -0.506 5.506 20 C 0.355 3.645 21 O -0.469 6.469 22 C 0.096 3.904 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.403 0.597 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -8.074 -6.398 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.325 5.325 13 C 0.345 3.655 14 O -0.413 6.413 15 C -0.190 4.190 16 C -0.056 4.056 17 C -0.208 4.208 18 C -0.021 4.021 19 N -0.225 5.225 20 C 0.176 3.824 21 O -0.276 6.276 22 C -0.026 4.026 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.696 -9.156 -7.010 12.862 hybrid contribution 0.175 1.682 0.703 1.831 sum -5.521 -7.474 -6.308 11.231 Atomic orbital electron populations 1.69826 1.05865 1.26534 1.50916 1.24957 0.94876 0.99089 0.95003 0.86610 0.79947 0.83452 0.78106 1.20739 1.21213 1.19916 1.21198 0.92975 0.90515 1.50336 0.92658 1.18641 0.92650 0.91803 0.93926 1.22016 0.98916 0.94075 1.01142 1.21752 0.91663 0.99874 0.87655 1.48198 1.36131 1.20594 1.27529 1.17879 0.82685 0.82953 0.81971 1.90779 1.41926 1.33550 1.75019 1.21080 0.95816 1.06885 0.95224 1.21758 0.91411 0.92022 1.00361 1.22087 1.01748 1.03852 0.93151 1.22693 0.89641 0.92347 0.97407 1.67259 1.05785 1.15081 1.34335 1.19061 0.85635 0.91289 0.86447 1.84747 1.13619 1.35575 1.93645 1.22180 0.91981 0.87622 1.00801 1.21948 1.00116 0.94530 0.99605 0.92941 0.95363 0.91912 0.92931 0.91921 0.90159 0.83643 0.83685 0.81900 0.73795 0.91268 0.91627 0.87639 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 11.31 55.43 0.63 -23.11 16 2 C 0.06 1.61 5.30 -17.81 -0.09 1.52 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.23 8.56 -34.44 -0.29 -13.52 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 10 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 11 C 0.11 1.99 6.43 -3.71 -0.02 1.96 16 12 N -0.59 -10.32 2.98 -174.26 -0.52 -10.84 16 13 C 0.56 9.97 6.90 -12.47 -0.09 9.88 16 14 O -0.53 -11.19 16.16 1.37 0.02 -11.17 16 15 C -0.18 -2.80 4.93 -104.69 -0.52 -3.32 16 16 C -0.03 -0.35 7.55 -38.89 -0.29 -0.65 16 17 C -0.19 -1.81 10.09 -39.50 -0.40 -2.21 16 18 C 0.14 1.44 11.17 -17.49 -0.20 1.24 16 19 N -0.51 -7.10 10.37 -12.99 -0.13 -7.23 16 20 C 0.35 5.47 7.75 -16.62 -0.13 5.34 16 21 O -0.47 -7.20 12.74 -21.89 -0.28 -7.48 16 22 C 0.10 1.63 5.49 -3.93 -0.02 1.60 16 23 C -0.12 -2.60 5.14 -26.83 -0.14 -2.74 16 24 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 30 H 0.15 1.52 7.36 -52.49 -0.39 1.13 16 31 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.40 4.46 9.06 45.56 0.41 4.88 16 34 H 0.07 1.03 4.71 -51.93 -0.24 0.79 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.11 2.48 6.03 -51.93 -0.31 2.17 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -31.49 306.28 -7.03 -38.51 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.82 Total: 3.89 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.52 Total: -2.54 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.03 Total: -41.19 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.26 Total: -18.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.49 -7.03 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541979467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.527 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds