Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47245 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00141 * 3 2 1 6 6 H 1.48494 * 109.47084 * 150.00154 * 3 2 1 7 7 C 1.37880 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45818 * 180.02562 * 9 7 2 11 11 C 1.53193 * 109.31330 * 178.61753 * 10 9 7 12 12 N 1.46924 * 108.77704 * 54.63526 * 11 10 9 13 13 C 1.34774 * 120.63313 * 126.37054 * 12 11 10 14 14 O 1.21588 * 119.99918 * 3.90086 * 13 12 11 15 15 C 1.47530 * 120.00212 * 183.90305 * 13 12 11 16 16 C 1.39992 * 120.59380 * 306.89963 * 15 13 12 17 17 C 1.38336 * 118.34512 * 180.02562 * 16 15 13 18 18 C 1.38353 * 119.46399 * 359.97438 * 17 16 15 19 19 N 1.31887 * 121.18077 * 0.02562 * 18 17 16 20 20 C 1.32230 * 121.79978 * 359.97438 * 19 18 17 21 21 O 1.35426 * 119.79411 * 180.02562 * 20 19 18 22 22 C 1.46929 * 118.73733 * 306.64584 * 12 11 10 23 23 C 1.52758 * 109.01042 * 53.30634 * 22 12 11 24 24 H 0.96995 * 120.00072 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.45313 * 299.97315 * 9 7 2 26 26 H 1.08997 * 109.50367 * 58.66364 * 10 9 7 27 27 H 1.09004 * 109.52707 * 298.58379 * 10 9 7 28 28 H 1.08993 * 109.58586 * 294.84462 * 11 10 9 29 29 H 1.09004 * 109.70514 * 174.49128 * 11 10 9 30 30 H 1.07997 * 120.82391 * 0.04297 * 16 15 13 31 31 H 1.08005 * 120.26523 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.40890 * 180.28466 * 18 17 16 33 33 H 0.96701 * 114.00480 * 90.00609 * 21 20 19 34 34 H 1.09004 * 109.58894 * 173.14240 * 22 12 11 35 35 H 1.09004 * 109.58718 * 293.56683 * 22 12 11 36 36 H 1.09001 * 109.56826 * 185.55488 * 23 22 12 37 37 H 1.09002 * 109.35950 * 65.50117 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0343 12 7 0.5224 -5.0089 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 1.2484 -6.9869 -1.7852 15 6 -0.3925 -6.0021 -3.1216 16 6 -1.7639 -5.7771 -2.9526 17 6 -2.5695 -5.7566 -4.0770 18 6 -2.0034 -5.9563 -5.3236 19 7 -0.7085 -6.1666 -5.4597 20 6 0.1059 -6.1961 -4.4184 21 8 1.4293 -6.4148 -4.6051 22 6 -0.4164 -3.8886 -1.2319 23 6 0.3700 -2.5792 -1.2494 24 1 -0.4850 0.8400 -0.0004 25 1 0.6253 -2.5570 0.8900 26 1 2.8884 -3.5914 0.8770 27 1 2.8562 -3.6195 -0.9027 28 1 0.9374 -5.0712 0.9777 29 1 2.1737 -5.8190 -0.0639 30 1 -2.1824 -5.6231 -1.9690 31 1 -3.6318 -5.5860 -3.9825 32 1 -2.6324 -5.9355 -6.2012 33 1 1.9463 -5.6086 -4.7383 34 1 -0.9668 -3.9952 -2.1668 35 1 -1.1135 -3.8818 -0.3939 36 1 -0.3225 -1.7375 -1.2606 37 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541979467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -61.296346 kcal Electronic energy + Delta-G solvation = -21658.599821 eV Core-core repulsion = 18400.209038 eV Total energy + Delta-G solvation = -3258.390783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02537 -40.46566 -38.48702 -38.08149 -35.41705 -34.12045 -32.77467 -31.81752 -31.27368 -28.16063 -25.95549 -24.63560 -24.31733 -23.71731 -21.78715 -20.35250 -19.73387 -18.71302 -18.12104 -17.94060 -17.40217 -16.93720 -16.49003 -15.93339 -15.80080 -15.14272 -14.95602 -14.63257 -14.47126 -14.32078 -14.10486 -13.91065 -13.47526 -13.30496 -13.10299 -12.81780 -12.81244 -12.48111 -12.16812 -11.98841 -11.51247 -11.29274 -11.06453 -11.03470 -10.70025 -10.47871 -10.36481 -10.00204 -9.60767 -8.08593 -6.20955 -0.31865 0.07493 1.41062 1.43989 1.50687 1.52241 1.96473 2.43920 2.45317 2.72329 3.18502 3.32879 3.71100 3.86353 4.00437 4.06871 4.21625 4.30013 4.43017 4.43411 4.47406 4.55448 4.69471 4.84133 4.89145 4.95060 5.03446 5.16487 5.21547 5.40108 5.46528 5.51629 5.63908 5.97646 6.11099 6.34350 6.39439 6.46008 6.80845 6.87958 7.02523 7.46737 8.94986 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.005068 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.351373 B = 5523.612753 C = 5979.729754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.593 5.593 13 C 0.563 3.437 14 O -0.573 6.573 15 C -0.210 4.210 16 C -0.034 4.034 17 C -0.168 4.168 18 C 0.139 3.861 19 N -0.528 5.528 20 C 0.334 3.666 21 O -0.489 6.489 22 C 0.109 3.891 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.008 0.992 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.191 0.809 32 H 0.204 0.796 33 H 0.414 0.586 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -8.053 -7.187 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.324 5.324 13 C 0.351 3.649 14 O -0.453 6.453 15 C -0.217 4.217 16 C -0.060 4.060 17 C -0.187 4.187 18 C -0.018 4.018 19 N -0.247 5.247 20 C 0.156 3.844 21 O -0.299 6.299 22 C -0.013 4.013 23 C -0.152 4.152 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.180 0.820 31 H 0.208 0.792 32 H 0.221 0.779 33 H 0.275 0.725 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.699 -9.122 -7.800 14.259 hybrid contribution 0.735 1.690 0.900 2.051 sum -6.964 -7.432 -6.900 12.302 Atomic orbital electron populations 1.69924 1.06690 1.27148 1.51208 1.25584 0.95685 1.01758 0.94849 0.85745 0.78825 0.80142 0.78055 1.20443 1.20796 1.19856 1.21529 0.92882 0.92251 1.50593 0.93571 1.18615 0.93049 0.91841 0.93811 1.21861 0.98343 0.94162 1.00787 1.21661 0.91882 0.98374 0.88607 1.48202 1.36047 1.20674 1.27463 1.18261 0.82372 0.82115 0.82178 1.90747 1.43712 1.34946 1.75918 1.20957 0.96927 1.09884 0.93904 1.22072 0.90155 0.91523 1.02223 1.22565 1.03527 1.00999 0.91655 1.23516 0.88729 0.90084 0.99496 1.67320 1.07369 1.16051 1.33981 1.19225 0.85676 0.92520 0.87020 1.84695 1.14500 1.36894 1.93785 1.22058 0.91334 0.85172 1.02690 1.21707 0.99433 0.96133 0.97964 0.92873 0.97424 0.91542 0.94002 0.90511 0.90184 0.81981 0.79220 0.77908 0.72548 0.88742 0.90444 0.89931 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.57 11.31 21.45 0.24 -48.33 16 2 C 0.02 1.07 5.30 84.65 0.45 1.52 16 3 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -28.03 8.56 25.60 0.22 -27.81 16 8 H 0.05 2.44 7.74 -2.91 -0.02 2.41 16 9 C 0.05 2.10 2.07 -11.51 -0.02 2.07 16 10 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 11 C 0.12 4.10 6.43 86.36 0.55 4.65 16 12 N -0.59 -20.27 2.98 -823.50 -2.45 -22.73 16 13 C 0.56 19.89 6.90 86.69 0.60 20.49 16 14 O -0.57 -24.25 16.16 -0.24 0.00 -24.26 16 15 C -0.21 -6.18 4.93 -19.91 -0.10 -6.28 16 16 C -0.03 -0.71 7.55 22.72 0.17 -0.54 16 17 C -0.17 -2.46 10.09 22.32 0.23 -2.24 16 18 C 0.14 2.39 11.17 84.71 0.95 3.34 16 19 N -0.53 -13.88 10.37 -308.01 -3.19 -17.07 16 20 C 0.33 10.13 7.75 85.13 0.66 10.79 16 21 O -0.49 -15.41 12.74 -83.47 -1.06 -16.48 16 22 C 0.11 3.56 5.49 86.22 0.47 4.03 16 23 C -0.11 -4.80 5.14 30.53 0.16 -4.65 16 24 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 2.84 7.02 -2.38 -0.02 2.82 16 30 H 0.16 2.80 7.36 -2.91 -0.02 2.78 16 31 H 0.19 1.11 8.06 -2.91 -0.02 1.08 16 32 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.41 9.67 9.06 -74.06 -0.67 9.00 16 34 H 0.09 2.62 4.71 -2.38 -0.01 2.61 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.34 306.28 0.48 -68.87 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.43 Total: 15.11 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.49 Total: 1.02 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -5.41 Total: -88.12 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.07 Total: -40.73 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.34 0.48 -68.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541979467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.570 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds