Wall clock time and date at job start Mon Mar 30 2020 02:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47276 * 239.99720 * 3 2 1 5 5 H 1.48502 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99715 * 3 2 1 7 7 C 1.37878 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99909 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.88647 * 62.42940 * 9 7 2 11 11 C 1.55157 * 111.03552 * 186.33465 * 9 7 2 12 12 C 1.54342 * 103.01851 * 153.39861 * 11 9 7 13 13 N 1.47022 * 107.26327 * 338.13510 * 12 11 9 14 14 C 1.34776 * 125.64280 * 178.85081 * 13 12 11 15 15 O 1.21588 * 119.99444 * 179.69171 * 14 13 12 16 16 N 1.34776 * 120.00587 * 359.69948 * 14 13 12 17 17 C 1.39943 * 120.00223 * 185.32088 * 16 14 13 18 18 C 1.38870 * 120.06786 * 213.02561 * 17 16 14 19 19 C 1.38110 * 119.93038 * 180.25099 * 18 17 16 20 20 C 1.38287 * 120.06868 * 0.02874 * 19 18 17 21 21 C 1.38284 * 120.13749 * 359.97438 * 20 19 18 22 22 C 1.38111 * 120.07077 * 359.97438 * 21 20 19 23 23 C 1.47425 * 108.70422 * 358.58771 * 13 12 11 24 24 H 0.97000 * 120.00309 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99759 * 297.57207 * 10 9 7 26 26 H 1.09007 * 110.71845 * 271.94838 * 11 9 7 27 27 H 1.08996 * 110.72395 * 35.22701 * 11 9 7 28 28 H 1.09004 * 109.98642 * 218.66316 * 12 11 9 29 29 H 1.08995 * 109.77662 * 97.49561 * 12 11 9 30 30 H 0.97003 * 119.99739 * 5.31232 * 16 14 13 31 31 H 1.08000 * 120.03431 * 0.25628 * 18 17 16 32 32 H 1.07996 * 119.96652 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.92957 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.96328 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.02983 * 179.97438 * 22 21 20 36 36 H 1.08999 * 110.36013 * 143.19374 * 23 13 12 37 37 H 1.08993 * 110.36782 * 265.40350 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1837 11 6 2.2191 -3.7011 0.1586 12 6 1.3291 -4.7805 0.8105 13 7 0.2064 -4.0870 1.4588 14 6 -0.8064 -4.6806 2.1208 15 8 -1.6823 -4.0043 2.6247 16 7 -0.8484 -6.0237 2.2246 17 6 -1.9548 -6.6458 2.8139 18 6 -1.7896 -7.8199 3.5369 19 6 -2.8842 -8.4342 4.1129 20 6 -4.1438 -7.8818 3.9698 21 6 -4.3116 -6.7127 3.2504 22 6 -3.2208 -6.0930 2.6729 23 6 0.3754 -2.6347 1.2702 24 1 -0.4850 0.8400 0.0004 25 1 -0.2253 -1.9558 -1.2758 26 1 2.5836 -4.0340 -0.8133 27 1 3.0498 -3.4430 0.8155 28 1 1.9009 -5.3357 1.5540 29 1 0.9533 -5.4599 0.0456 30 1 -0.1117 -6.5591 1.8906 31 1 -0.8062 -8.2520 3.6486 32 1 -2.7563 -9.3471 4.6756 33 1 -4.9981 -8.3638 4.4215 34 1 -5.2966 -6.2839 3.1401 35 1 -3.3526 -5.1802 2.1108 36 1 -0.5923 -2.1570 1.1168 37 1 0.8817 -2.1968 2.1303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592453697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:46 Heat of formation + Delta-G solvation = -64.924450 kcal Electronic energy + Delta-G solvation = -21279.749679 eV Core-core repulsion = 18021.201570 eV Total energy + Delta-G solvation = -3258.548110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76959 -40.04425 -38.83668 -36.13365 -35.69885 -34.24324 -32.03973 -31.79427 -30.26707 -29.45391 -26.98935 -24.65650 -23.68286 -23.01858 -21.50682 -20.91161 -19.46855 -18.96212 -18.40881 -17.25408 -17.03403 -16.86555 -16.33401 -16.16228 -15.60697 -15.09621 -14.99406 -14.72108 -14.59287 -14.22940 -13.87804 -13.75553 -13.52555 -13.29855 -12.81678 -12.67117 -12.47096 -12.34369 -12.28387 -12.15945 -12.10499 -11.48740 -11.23566 -11.14369 -10.66966 -10.34388 -9.83637 -9.61049 -8.98596 -8.25210 -6.42871 0.38659 0.50173 1.42692 1.44057 1.51670 1.54473 2.01809 2.37943 2.93086 2.94879 3.01094 3.76445 3.97790 4.08152 4.11353 4.15347 4.29969 4.34419 4.54638 4.57591 4.63024 4.67265 4.73344 5.04166 5.06780 5.12162 5.20067 5.33018 5.42725 5.44160 5.47978 5.61148 5.66414 5.74604 6.02266 6.10509 6.15527 6.64236 6.90099 7.25748 7.33967 7.41664 8.79746 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.004101 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.312847 B = 6825.784536 C = 7239.941111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.102 3.898 13 N -0.628 5.628 14 C 0.708 3.292 15 O -0.624 6.624 16 N -0.672 5.672 17 C 0.147 3.853 18 C -0.149 4.149 19 C -0.096 4.096 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.155 4.155 23 C 0.129 3.871 24 H 0.269 0.731 25 H 0.372 0.628 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.420 0.580 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -16.972 5.692 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.147 4.147 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.411 3.589 15 O -0.505 6.505 16 N -0.321 5.321 17 C 0.052 3.948 18 C -0.169 4.169 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.129 4.129 22 C -0.176 4.176 23 C 0.005 3.995 24 H 0.078 0.922 25 H 0.221 0.779 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.258 0.742 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.497 -16.878 5.936 17.954 hybrid contribution 0.077 1.926 -0.260 1.945 sum -1.421 -14.952 5.676 16.056 Atomic orbital electron populations 1.69837 1.07238 1.28472 1.49930 1.25837 0.95712 1.02892 0.93017 0.85513 0.78286 0.78287 0.78985 1.19378 1.21266 1.19416 1.21778 0.94030 0.91159 1.52621 0.91103 1.19871 0.87162 0.93291 0.80506 1.86097 1.51417 1.56786 1.45143 1.22601 0.97160 0.93562 1.01408 1.22223 0.87097 0.95634 0.97018 1.47923 1.24405 1.08994 1.55063 1.15708 0.81630 0.82238 0.79330 1.90875 1.40959 1.64296 1.54368 1.42459 1.22263 1.04280 1.63077 1.17878 0.85885 0.94589 0.96412 1.21172 1.01485 0.95665 0.98628 1.21371 0.91473 1.00350 0.98211 1.21481 0.98871 0.95704 0.99791 1.21256 0.98184 0.96112 0.97310 1.21196 0.92692 1.00800 1.02920 1.22722 1.00225 0.77232 0.99307 0.92191 0.77904 0.89434 0.89062 0.88670 0.90690 0.74158 0.83168 0.82081 0.83006 0.84833 0.88488 0.93739 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 10.69 21.45 0.23 -50.14 16 2 C 0.03 1.39 5.29 84.66 0.45 1.83 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.56 -28.81 8.27 25.60 0.21 -28.60 16 8 H 0.07 3.51 7.79 -2.91 -0.02 3.48 16 9 C 0.23 11.13 0.87 -10.15 -0.01 11.12 16 10 O -0.59 -30.07 13.16 -148.98 -1.96 -32.03 16 11 C -0.11 -4.01 6.13 31.79 0.19 -3.81 16 12 C 0.10 3.20 6.16 86.74 0.53 3.74 16 13 N -0.63 -25.79 3.33 -829.73 -2.76 -28.55 16 14 C 0.71 29.50 8.23 179.05 1.47 30.97 16 15 O -0.62 -31.59 14.28 -3.99 -0.06 -31.64 16 16 N -0.67 -20.83 5.30 -317.18 -1.68 -22.51 16 17 C 0.15 4.40 6.28 38.15 0.24 4.64 16 18 C -0.15 -3.18 9.96 22.39 0.22 -2.96 16 19 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 20 C -0.14 -2.69 10.04 22.29 0.22 -2.47 16 21 C -0.11 -2.83 10.04 22.25 0.22 -2.60 16 22 C -0.16 -5.19 8.66 22.39 0.19 -4.99 16 23 C 0.13 6.36 5.38 86.86 0.47 6.83 16 24 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 25 H 0.37 20.17 7.56 -74.05 -0.56 19.61 16 26 H 0.09 2.98 8.14 -2.38 -0.02 2.97 16 27 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.42 9.73 7.81 -92.71 -0.72 9.00 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.10 3.97 6.40 -2.91 -0.02 3.95 16 36 H 0.04 2.55 7.33 -2.39 -0.02 2.53 16 37 H 0.04 2.14 8.03 -2.39 -0.02 2.12 16 Total: -1.00 -68.83 310.89 0.26 -68.57 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.18 Total: 40.32 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 4.65 Total: 12.25 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.21 Total: -101.21 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -2.02 Total: -63.68 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -68.83 0.26 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592453697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.647 kcal (2) G-P(sol) polarization free energy of solvation -68.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds