Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00087 * 2 1 4 4 H 1.48492 * 109.46945 * 264.91192 * 3 2 1 5 5 H 1.48500 * 109.47059 * 24.91608 * 3 2 1 6 6 H 1.48501 * 109.46943 * 144.91518 * 3 2 1 7 7 C 1.37880 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99954 * 0.51895 * 7 2 1 9 9 C 1.50697 * 120.00135 * 180.52175 * 7 2 1 10 10 C 1.53002 * 115.54816 * 86.43449 * 9 7 2 11 11 N 1.46496 * 109.47099 * 64.89027 * 10 9 7 12 12 C 1.34781 * 119.99890 * 184.29758 * 11 10 9 13 13 O 1.21284 * 119.99914 * 5.15766 * 12 11 10 14 14 C 1.50701 * 119.99912 * 185.15241 * 12 11 10 15 15 C 1.50700 * 109.47160 * 180.23317 * 14 12 11 16 16 C 1.38253 * 120.38879 * 269.72458 * 15 14 12 17 17 N 1.31854 * 120.88703 * 180.27075 * 16 15 14 18 18 C 1.31835 * 121.77781 * 0.02562 * 17 16 15 19 19 C 1.38707 * 120.68755 * 359.97438 * 18 17 16 20 20 O 1.35907 * 120.47258 * 179.97438 * 19 18 17 21 21 C 1.38534 * 120.39067 * 89.99705 * 15 14 12 22 22 C 1.53001 * 117.49659 * 232.10379 * 9 7 2 23 23 C 1.53005 * 117.49734 * 300.76555 * 9 7 2 24 24 H 0.97003 * 119.99692 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47366 * 304.88596 * 10 9 7 26 26 H 1.09006 * 109.46516 * 184.88657 * 10 9 7 27 27 H 0.96999 * 120.00588 * 4.30022 * 11 10 9 28 28 H 1.08998 * 109.47160 * 60.23232 * 14 12 11 29 29 H 1.09004 * 109.47242 * 300.23414 * 14 12 11 30 30 H 1.08000 * 119.55560 * 0.27350 * 16 15 14 31 31 H 1.08001 * 119.65666 * 180.02562 * 18 17 16 32 32 H 0.96698 * 114.00425 * 270.02126 * 20 19 18 33 33 H 1.07998 * 120.81046 * 359.70813 * 21 15 14 34 34 H 1.09001 * 117.49640 * 214.99961 * 22 9 7 35 35 H 1.08995 * 117.50087 * 0.02689 * 22 9 7 36 36 H 1.08996 * 117.49857 * 359.97386 * 23 9 7 37 37 H 1.08995 * 117.49629 * 144.97627 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6042 1.9843 -1.3945 5 1 1.3971 2.6813 0.5898 6 1 3.4889 1.4735 0.8048 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 -0.0075 9 6 3.5115 -1.1941 0.0124 10 6 4.1604 -1.1140 1.3957 11 7 3.8362 -2.3222 2.1580 12 6 4.2300 -2.4349 3.4420 13 8 4.7702 -1.5002 3.9948 14 6 3.9991 -3.7222 4.1908 15 6 4.5221 -3.5858 5.5975 16 6 5.8287 -3.9269 5.8941 17 7 6.2949 -3.8165 7.1225 18 6 5.5432 -3.3804 8.1138 19 6 4.2221 -3.0189 7.8945 20 8 3.4509 -2.5705 8.9198 21 6 3.6977 -3.1225 6.6099 22 6 4.2263 -2.0234 -1.0564 23 6 4.2271 -0.4951 -1.1453 24 1 -0.4850 0.8401 -0.0004 25 1 3.7827 -0.2387 1.9241 26 1 5.2419 -1.0332 1.2854 27 1 3.3380 -3.0412 1.7387 28 1 4.5216 -4.5348 3.6861 29 1 2.9313 -3.9393 4.2196 30 1 6.4761 -4.2886 5.1090 31 1 5.9605 -3.3031 9.1070 32 1 2.9729 -3.2691 9.3872 33 1 2.6730 -2.8484 6.4069 34 1 5.1590 -2.5118 -0.7741 35 1 3.6066 -2.5685 -1.7683 36 1 3.6079 -0.0357 -1.9157 37 1 5.1600 0.0221 -0.9214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594420045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -22.183983 kcal Electronic energy + Delta-G solvation = -20611.543870 eV Core-core repulsion = 17354.849126 eV Total energy + Delta-G solvation = -3256.694744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65468 -39.16760 -37.45384 -37.04709 -33.63276 -33.49716 -32.17376 -30.66753 -28.56412 -26.41233 -25.08746 -23.66743 -22.51459 -21.77843 -19.97802 -19.25605 -18.28379 -17.12958 -17.02965 -16.87557 -16.33289 -15.55400 -15.14945 -15.03951 -14.60172 -13.91561 -13.68425 -13.39711 -13.27452 -13.08348 -12.81919 -12.64020 -12.57271 -12.27302 -11.87043 -11.33978 -11.20722 -10.80834 -10.53357 -10.23957 -9.90186 -9.75080 -9.58723 -9.41927 -9.23807 -8.90436 -8.71139 -8.61038 -8.35726 -6.20330 -4.25296 0.87891 1.10620 3.00595 3.26136 3.36437 3.39783 3.44462 3.71762 3.93970 4.36243 4.37775 4.58772 4.74206 4.82518 4.88954 4.99451 5.07896 5.23371 5.36471 5.54134 5.58171 5.64092 5.94057 5.96310 6.01471 6.07712 6.17365 6.36874 6.39358 6.47411 6.65692 6.94674 7.02134 7.06574 7.32819 7.62910 7.81514 8.07088 8.35789 8.67777 8.79172 9.42917 10.90929 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.004119 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.143027 B = 6796.431347 C = 7324.235773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.155 3.845 11 N -0.701 5.701 12 C 0.507 3.493 13 O -0.549 6.549 14 C -0.102 4.102 15 C -0.090 4.090 16 C 0.102 3.898 17 N -0.468 5.468 18 C 0.071 3.929 19 C 0.056 3.944 20 O -0.491 6.491 21 C -0.089 4.089 22 C -0.178 4.178 23 C -0.195 4.195 24 H 0.266 0.734 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.404 0.596 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.390 0.610 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -10.292 10.904 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.122 4.122 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.031 3.969 11 N -0.350 5.350 12 C 0.292 3.708 13 O -0.427 6.427 14 C -0.143 4.143 15 C -0.092 4.092 16 C -0.055 4.055 17 N -0.177 5.177 18 C -0.087 4.087 19 C 0.009 3.991 20 O -0.300 6.300 21 C -0.115 4.115 22 C -0.215 4.215 23 C -0.232 4.232 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.239 0.761 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.246 0.754 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.730 -9.165 11.297 16.966 hybrid contribution -1.070 0.577 -0.344 1.263 sum 7.660 -8.588 10.953 15.887 Atomic orbital electron populations 1.69876 1.06377 1.27350 1.49534 1.24959 0.94581 0.99142 0.93548 0.86876 0.80431 0.83228 0.78770 1.20159 1.22082 1.18383 1.20168 0.86004 0.94493 1.52170 0.90376 1.19629 0.95264 1.00800 0.86061 1.21171 0.96588 0.86912 0.92207 1.45823 1.56295 1.21494 1.11423 1.20310 0.79305 0.89046 0.82171 1.90708 1.43936 1.40322 1.67759 1.20657 1.04098 0.97704 0.91836 1.20302 0.94981 0.98942 0.94997 1.22632 0.92675 0.96406 0.93763 1.67686 1.36815 1.12867 1.00313 1.23075 0.90576 0.96001 0.99033 1.19474 0.91918 0.99447 0.88232 1.84875 1.62856 1.36545 1.45711 1.21839 1.01282 0.96213 0.92146 1.22842 1.01090 0.92985 1.04586 1.22976 1.01488 0.95066 1.03716 0.92419 0.91497 0.93962 0.76106 0.87432 0.87480 0.82574 0.82486 0.75437 0.84180 0.90865 0.89367 0.89063 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.37 24.80 -169.99 -4.22 17.16 16 4 H -0.28 -6.50 7.03 56.52 0.40 -6.11 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.14 5.91 56.52 0.33 -5.81 16 7 C -0.49 -12.61 9.29 -34.44 -0.32 -12.93 16 8 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 9 C -0.02 -0.35 0.84 -155.66 -0.13 -0.48 16 10 C 0.15 3.17 5.22 -4.04 -0.02 3.15 16 11 N -0.70 -12.19 5.45 -60.29 -0.33 -12.52 16 12 C 0.51 8.49 7.82 -10.98 -0.09 8.40 16 13 O -0.55 -11.57 16.02 5.55 0.09 -11.48 16 14 C -0.10 -1.18 5.86 -29.03 -0.17 -1.35 16 15 C -0.09 -1.13 4.39 -104.51 -0.46 -1.59 16 16 C 0.10 1.29 10.85 -17.54 -0.19 1.10 16 17 N -0.47 -6.24 10.36 -13.13 -0.14 -6.38 16 18 C 0.07 0.84 11.14 -17.38 -0.19 0.65 16 19 C 0.06 0.66 6.74 -39.07 -0.26 0.40 16 20 O -0.49 -5.00 13.53 -19.45 -0.26 -5.27 16 21 C -0.09 -1.12 9.81 -39.14 -0.38 -1.50 16 22 C -0.18 -3.26 9.96 -26.69 -0.27 -3.53 16 23 C -0.19 -3.90 7.62 -26.69 -0.20 -4.11 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.07 1.57 6.64 -51.93 -0.34 1.23 16 26 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.40 6.27 8.44 -40.82 -0.34 5.92 16 28 H 0.11 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.11 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.39 1.80 9.06 45.56 0.41 2.22 16 33 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.09 1.93 7.16 -51.93 -0.37 1.56 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -33.82 319.72 -6.12 -39.95 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.08 Total: 8.77 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.78 Total: -9.66 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.31 Total: -44.29 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.17 Total: -16.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.22 Total: 17.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.82 -6.12 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594420045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.762 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds