Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00087 * 2 1 4 4 H 1.48492 * 109.46945 * 264.91192 * 3 2 1 5 5 H 1.48500 * 109.47059 * 24.91608 * 3 2 1 6 6 H 1.48501 * 109.46943 * 144.91518 * 3 2 1 7 7 C 1.37880 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99954 * 0.51895 * 7 2 1 9 9 C 1.50697 * 120.00135 * 180.52175 * 7 2 1 10 10 C 1.53002 * 115.54816 * 86.43449 * 9 7 2 11 11 N 1.46496 * 109.47099 * 64.89027 * 10 9 7 12 12 C 1.34781 * 119.99890 * 184.29758 * 11 10 9 13 13 O 1.21284 * 119.99914 * 5.15766 * 12 11 10 14 14 C 1.50701 * 119.99912 * 185.15241 * 12 11 10 15 15 C 1.50700 * 109.47160 * 180.23317 * 14 12 11 16 16 C 1.38253 * 120.38879 * 269.72458 * 15 14 12 17 17 N 1.31854 * 120.88703 * 180.27075 * 16 15 14 18 18 C 1.31835 * 121.77781 * 0.02562 * 17 16 15 19 19 C 1.38707 * 120.68755 * 359.97438 * 18 17 16 20 20 O 1.35907 * 120.47258 * 179.97438 * 19 18 17 21 21 C 1.38534 * 120.39067 * 89.99705 * 15 14 12 22 22 C 1.53001 * 117.49659 * 232.10379 * 9 7 2 23 23 C 1.53005 * 117.49734 * 300.76555 * 9 7 2 24 24 H 0.97003 * 119.99692 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47366 * 304.88596 * 10 9 7 26 26 H 1.09006 * 109.46516 * 184.88657 * 10 9 7 27 27 H 0.96999 * 120.00588 * 4.30022 * 11 10 9 28 28 H 1.08998 * 109.47160 * 60.23232 * 14 12 11 29 29 H 1.09004 * 109.47242 * 300.23414 * 14 12 11 30 30 H 1.08000 * 119.55560 * 0.27350 * 16 15 14 31 31 H 1.08001 * 119.65666 * 180.02562 * 18 17 16 32 32 H 0.96698 * 114.00425 * 270.02126 * 20 19 18 33 33 H 1.07998 * 120.81046 * 359.70813 * 21 15 14 34 34 H 1.09001 * 117.49640 * 214.99961 * 22 9 7 35 35 H 1.08995 * 117.50087 * 0.02689 * 22 9 7 36 36 H 1.08996 * 117.49857 * 359.97386 * 23 9 7 37 37 H 1.08995 * 117.49629 * 144.97627 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6042 1.9843 -1.3945 5 1 1.3971 2.6813 0.5898 6 1 3.4889 1.4735 0.8048 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 -0.0075 9 6 3.5115 -1.1941 0.0124 10 6 4.1604 -1.1140 1.3957 11 7 3.8362 -2.3222 2.1580 12 6 4.2300 -2.4349 3.4420 13 8 4.7702 -1.5002 3.9948 14 6 3.9991 -3.7222 4.1908 15 6 4.5221 -3.5858 5.5975 16 6 5.8287 -3.9269 5.8941 17 7 6.2949 -3.8165 7.1225 18 6 5.5432 -3.3804 8.1138 19 6 4.2221 -3.0189 7.8945 20 8 3.4509 -2.5705 8.9198 21 6 3.6977 -3.1225 6.6099 22 6 4.2263 -2.0234 -1.0564 23 6 4.2271 -0.4951 -1.1453 24 1 -0.4850 0.8401 -0.0004 25 1 3.7827 -0.2387 1.9241 26 1 5.2419 -1.0332 1.2854 27 1 3.3380 -3.0412 1.7387 28 1 4.5216 -4.5348 3.6861 29 1 2.9313 -3.9393 4.2196 30 1 6.4761 -4.2886 5.1090 31 1 5.9605 -3.3031 9.1070 32 1 2.9729 -3.2691 9.3872 33 1 2.6730 -2.8484 6.4069 34 1 5.1590 -2.5118 -0.7741 35 1 3.6066 -2.5685 -1.7683 36 1 3.6079 -0.0357 -1.9157 37 1 5.1600 0.0221 -0.9214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594420045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -48.863141 kcal Electronic energy + Delta-G solvation = -20612.700765 eV Core-core repulsion = 17354.849126 eV Total energy + Delta-G solvation = -3257.851639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60048 -40.49096 -38.75622 -38.18500 -34.98372 -34.61216 -34.21204 -31.57092 -29.68874 -28.07700 -26.77076 -24.58047 -23.55112 -23.27556 -21.34690 -20.92989 -19.18159 -18.53663 -17.97805 -17.94542 -17.81370 -16.98195 -16.74119 -16.19533 -15.99609 -15.38441 -14.82468 -14.72915 -14.52062 -14.35586 -14.21754 -14.03507 -13.87866 -13.39372 -13.10632 -13.07921 -12.62432 -12.19821 -12.16659 -12.00277 -11.60789 -11.11956 -10.98178 -10.68904 -10.62935 -10.45629 -10.30086 -9.88284 -9.77959 -8.31283 -6.36605 -0.00976 0.18036 1.31786 1.38050 1.46253 1.71802 2.29255 2.34690 2.73668 3.04426 3.05614 3.27770 3.51520 3.69781 3.86846 4.00276 4.02906 4.09562 4.17599 4.37552 4.42508 4.49313 4.52556 4.70146 4.74581 4.87013 4.88809 5.05068 5.11275 5.17654 5.32057 5.50428 5.57700 5.60438 5.69864 6.27923 6.70009 6.71042 6.76095 6.92819 7.33828 7.37221 8.83213 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.004119 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.143027 B = 6796.431347 C = 7324.235773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.305 1.305 6 H -0.250 1.250 7 C -0.475 4.475 8 H 0.050 0.950 9 C -0.041 4.041 10 C 0.164 3.836 11 N -0.700 5.700 12 C 0.505 3.495 13 O -0.595 6.595 14 C -0.090 4.090 15 C -0.099 4.099 16 C 0.091 3.909 17 N -0.487 5.487 18 C 0.064 3.936 19 C 0.057 3.943 20 O -0.501 6.501 21 C -0.106 4.106 22 C -0.146 4.146 23 C -0.199 4.199 24 H 0.264 0.736 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.414 0.586 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.175 0.825 31 H 0.179 0.821 32 H 0.414 0.586 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -11.480 11.013 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.187 1.187 5 H -0.233 1.233 6 H -0.173 1.173 7 C -0.513 4.513 8 H 0.068 0.932 9 C -0.042 4.042 10 C 0.039 3.961 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.477 6.477 14 C -0.130 4.130 15 C -0.102 4.102 16 C -0.065 4.065 17 N -0.197 5.197 18 C -0.094 4.094 19 C 0.010 3.990 20 O -0.313 6.313 21 C -0.132 4.132 22 C -0.183 4.183 23 C -0.237 4.237 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.250 0.750 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.192 0.808 31 H 0.196 0.804 32 H 0.274 0.726 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.513 -10.401 11.401 18.673 hybrid contribution -1.650 0.873 -0.316 1.894 sum 8.863 -9.527 11.085 17.094 Atomic orbital electron populations 1.70002 1.07949 1.27788 1.52591 1.25648 0.95033 1.02217 0.94109 0.86116 0.79502 0.79785 0.79413 1.18705 1.23292 1.17340 1.20380 0.88542 0.92917 1.49472 0.93202 1.19460 0.92875 1.04395 0.87441 1.20855 0.96997 0.86947 0.91289 1.45802 1.56537 1.20786 1.11841 1.21167 0.77731 0.90183 0.81634 1.90689 1.45954 1.42457 1.68569 1.20683 1.05931 0.95613 0.90769 1.20432 0.95127 0.99180 0.95422 1.22979 0.93031 0.96436 0.94101 1.67710 1.37460 1.13592 1.00907 1.23441 0.90636 0.95568 0.99754 1.19519 0.92200 0.98822 0.88460 1.84811 1.62968 1.38040 1.45472 1.22068 1.01722 0.96655 0.92790 1.22883 1.01534 0.92069 1.01810 1.23037 1.01819 0.96679 1.02132 0.92744 0.95152 0.92528 0.74968 0.83593 0.85451 0.80794 0.80400 0.72646 0.83895 0.87498 0.89430 0.90475 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.93 44.19 24.80 68.60 1.70 45.89 16 4 H -0.26 -11.81 7.03 99.48 0.70 -11.11 16 5 H -0.31 -15.02 7.11 99.48 0.71 -14.32 16 6 H -0.25 -11.43 5.91 99.48 0.59 -10.84 16 7 C -0.48 -24.45 9.29 25.60 0.24 -24.21 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 9 C -0.04 -1.66 0.84 -52.93 -0.04 -1.71 16 10 C 0.16 6.46 5.22 86.38 0.45 6.91 16 11 N -0.70 -23.11 5.45 -463.05 -2.53 -25.63 16 12 C 0.51 16.09 7.82 87.66 0.69 16.78 16 13 O -0.60 -24.70 16.02 -3.04 -0.05 -24.75 16 14 C -0.09 -1.83 5.86 29.10 0.17 -1.66 16 15 C -0.10 -2.33 4.39 -19.79 -0.09 -2.42 16 16 C 0.09 2.15 10.85 84.69 0.92 3.07 16 17 N -0.49 -12.36 10.36 -195.44 -2.02 -14.38 16 18 C 0.06 1.43 11.14 84.80 0.94 2.37 16 19 C 0.06 1.28 6.74 22.60 0.15 1.43 16 20 O -0.50 -9.45 13.53 -92.51 -1.25 -10.71 16 21 C -0.11 -2.55 9.81 22.56 0.22 -2.33 16 22 C -0.15 -4.85 9.96 30.62 0.30 -4.55 16 23 C -0.20 -7.43 7.62 30.62 0.23 -7.20 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.03 1.41 6.64 -2.39 -0.02 1.40 16 26 H 0.06 2.07 8.09 -2.38 -0.02 2.05 16 27 H 0.41 11.98 8.44 -92.71 -0.78 11.19 16 28 H 0.15 1.86 8.09 -2.39 -0.02 1.84 16 29 H 0.13 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.41 3.08 9.06 -74.06 -0.67 2.41 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.11 2.89 8.14 -2.39 -0.02 2.88 16 35 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.08 3.11 7.16 -2.39 -0.02 3.09 16 37 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -74.48 319.72 0.33 -74.15 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.47 Total: 23.33 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.65 Total: -11.50 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -4.25 Total: -96.42 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.30 Total: -35.46 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.70 Total: 45.89 kcal Total: -74.48 0.33 -74.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594420045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.287 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds