Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48498 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46777 * 299.99471 * 3 2 1 6 6 H 1.48500 * 109.47037 * 59.99480 * 3 2 1 7 7 C 1.38953 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99694 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99648 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00096 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99830 * 180.27546 * 10 9 7 13 13 N 1.46898 * 109.46891 * 185.28931 * 12 10 9 14 14 C 1.40041 * 110.99401 * 195.84672 * 13 12 10 15 15 C 1.39405 * 129.94439 * 76.22304 * 14 13 12 16 16 C 1.37910 * 120.19856 * 180.35589 * 15 14 13 17 17 C 1.38307 * 120.26721 * 359.94584 * 16 15 14 18 18 C 1.38312 * 119.87619 * 359.89071 * 17 16 15 19 19 C 1.37914 * 120.08243 * 0.02562 * 18 17 16 20 20 C 1.51572 * 131.55985 * 180.23512 * 19 18 17 21 21 C 1.47897 * 110.99968 * 75.83473 * 13 12 10 22 22 H 1.08996 * 110.78024 * 336.39434 * 21 13 12 23 23 C 1.53001 * 110.77853 * 212.96127 * 21 13 12 24 24 O 1.42903 * 109.47143 * 295.00307 * 23 21 13 25 25 H 0.96998 * 119.99766 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00002 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46823 * 305.29125 * 12 10 9 28 28 H 1.09006 * 109.46835 * 65.28781 * 12 10 9 29 29 H 1.07999 * 119.90674 * 0.31284 * 15 14 13 30 30 H 1.08003 * 119.86897 * 179.97438 * 16 15 14 31 31 H 1.07993 * 120.06325 * 179.86635 * 17 16 15 32 32 H 1.08002 * 119.95462 * 179.97438 * 18 17 16 33 33 H 1.08993 * 110.74833 * 45.49556 * 20 19 18 34 34 H 1.09004 * 110.74069 * 282.15041 * 20 19 18 35 35 H 1.08998 * 109.46926 * 54.99672 * 23 21 13 36 36 H 1.08996 * 109.47424 * 174.99933 * 23 21 13 37 37 H 0.96698 * 114.00241 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 -0.0047 13 7 2.1924 -5.9769 0.1255 14 6 1.5925 -7.1912 -0.2304 15 6 1.2909 -7.7050 -1.4907 16 6 0.6841 -8.9377 -1.6102 17 6 0.3716 -9.6732 -0.4814 18 6 0.6708 -9.1717 0.7724 19 6 1.2791 -7.9403 0.8972 20 6 1.7206 -7.1559 2.1168 21 6 2.6777 -6.0998 1.5172 22 1 2.5847 -5.1504 2.0444 23 6 4.1237 -6.5990 1.5457 24 8 4.1793 -7.9277 1.0227 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.5436 -4.8824 0.8306 28 1 0.6944 -4.9610 -0.9412 29 1 1.5324 -7.1358 -2.3762 30 1 0.4524 -9.3305 -2.5892 31 1 -0.1054 -10.6372 -0.5788 32 1 0.4270 -9.7449 1.6547 33 1 2.2488 -7.8000 2.8197 34 1 0.8676 -6.6762 2.5968 35 1 4.7466 -5.9429 0.9377 36 1 4.4885 -6.5973 2.5728 37 1 5.0681 -8.3086 1.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595658338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = -36.653408 kcal Electronic energy + Delta-G solvation = -21410.058682 eV Core-core repulsion = 18152.736497 eV Total energy + Delta-G solvation = -3257.322185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78452 -38.07039 -37.01651 -35.61312 -33.89515 -32.15968 -31.22133 -29.74064 -29.61990 -26.75461 -25.67243 -24.21454 -21.79904 -21.06325 -20.48027 -19.13364 -17.90710 -17.26860 -16.44507 -15.91685 -15.76851 -15.03031 -14.91865 -14.45093 -14.39577 -14.01368 -13.72049 -13.33531 -13.30119 -12.85883 -12.63197 -12.22018 -12.10148 -11.75905 -11.60196 -11.44092 -11.14323 -11.09549 -10.84075 -10.60489 -10.35502 -10.23806 -9.78192 -9.52565 -9.30766 -8.57895 -8.28213 -7.97711 -7.53583 -6.42778 -3.83702 1.56508 1.61161 3.15309 3.26052 3.32951 3.75111 3.88106 3.97120 4.18851 4.46144 4.77255 4.85037 5.03940 5.11841 5.18443 5.22141 5.26820 5.42679 5.59591 5.62498 5.72829 5.78765 5.82923 5.88274 5.96669 6.09855 6.11134 6.23705 6.31083 6.57050 6.67407 6.70688 6.98292 7.21953 7.54168 7.59878 7.83806 8.04960 8.60335 9.16905 9.52924 10.04454 10.75045 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.004431 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.685920 B = 6317.476256 C = 6812.764941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.575 6.575 12 C 0.048 3.952 13 N -0.461 5.461 14 C 0.115 3.885 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.102 4.102 21 C 0.090 3.910 22 H 0.106 0.894 23 C 0.093 3.907 24 O -0.562 6.562 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -16.175 2.655 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.458 6.458 12 C -0.081 4.081 13 N -0.177 5.177 14 C 0.019 3.981 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.161 4.161 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.017 4.017 22 H 0.124 0.876 23 C 0.015 3.985 24 O -0.366 6.366 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.839 -15.695 2.262 15.880 hybrid contribution -0.222 0.691 0.500 0.881 sum 0.617 -15.005 2.761 15.269 Atomic orbital electron populations 1.69622 1.05950 1.28066 1.50634 1.25261 0.95620 0.99705 0.97336 0.85807 0.79699 0.81164 0.77717 1.19227 1.20736 1.20772 1.19741 0.93366 0.82140 1.47518 0.87852 1.41874 1.09211 1.04545 1.64523 1.19704 0.88437 0.84402 0.84739 1.90517 1.13512 1.86920 1.54898 1.22007 0.93173 0.90471 1.02440 1.59482 1.34252 1.00990 1.22963 1.19518 0.93592 0.91383 0.93652 1.20476 1.01325 0.96250 0.95528 1.20812 0.99146 0.94307 0.98424 1.20905 1.02779 1.00047 0.92356 1.20276 0.99107 0.94407 0.97289 1.20839 0.99669 0.96444 0.95289 1.21651 0.99076 0.97100 0.96218 1.22658 0.93709 0.98189 0.87157 0.87639 1.22074 0.95919 0.83746 0.96797 1.86581 1.33211 1.29788 1.87068 0.91911 0.77488 0.92602 0.89017 0.86149 0.86147 0.86410 0.86866 0.89648 0.90519 0.91693 0.93646 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.44 7.25 -10.98 -0.08 10.36 16 11 O -0.58 -15.40 15.54 5.55 0.09 -15.32 16 12 C 0.05 0.90 5.23 -4.98 -0.03 0.88 16 13 N -0.46 -8.38 4.27 -162.92 -0.70 -9.08 16 14 C 0.12 1.91 4.85 -83.41 -0.40 1.51 16 15 C -0.12 -1.75 10.04 -39.27 -0.39 -2.15 16 16 C -0.11 -1.38 10.02 -39.68 -0.40 -1.77 16 17 C -0.14 -1.72 10.06 -39.53 -0.40 -2.12 16 18 C -0.09 -1.21 10.03 -39.67 -0.40 -1.60 16 19 C -0.12 -1.79 5.42 -104.04 -0.56 -2.36 16 20 C -0.10 -1.43 6.14 -26.60 -0.16 -1.59 16 21 C 0.09 1.47 2.66 -66.31 -0.18 1.30 16 22 H 0.11 1.82 7.30 -51.93 -0.38 1.44 16 23 C 0.09 1.37 6.94 37.16 0.26 1.62 16 24 O -0.56 -7.88 11.64 -35.23 -0.41 -8.29 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 27 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 28 H 0.09 1.63 7.95 -51.93 -0.41 1.21 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.09 1.08 7.87 -51.93 -0.41 0.67 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.37 3.50 9.12 45.56 0.42 3.92 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -32.40 314.70 -7.61 -40.01 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -3.99 Total: 13.88 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.98 Total: -3.82 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.03 Total: -47.11 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.32 Total: -23.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.40 -7.61 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.359 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds