Wall clock time and date at job start Mon Mar 30 2020 01:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48498 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46777 * 299.99471 * 3 2 1 6 6 H 1.48500 * 109.47037 * 59.99480 * 3 2 1 7 7 C 1.38953 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99694 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99648 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00096 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99830 * 180.27546 * 10 9 7 13 13 N 1.46898 * 109.46891 * 185.28931 * 12 10 9 14 14 C 1.40041 * 110.99401 * 195.84672 * 13 12 10 15 15 C 1.39405 * 129.94439 * 76.22304 * 14 13 12 16 16 C 1.37910 * 120.19856 * 180.35589 * 15 14 13 17 17 C 1.38307 * 120.26721 * 359.94584 * 16 15 14 18 18 C 1.38312 * 119.87619 * 359.89071 * 17 16 15 19 19 C 1.37914 * 120.08243 * 0.02562 * 18 17 16 20 20 C 1.51572 * 131.55985 * 180.23512 * 19 18 17 21 21 C 1.47897 * 110.99968 * 75.83473 * 13 12 10 22 22 H 1.08996 * 110.78024 * 336.39434 * 21 13 12 23 23 C 1.53001 * 110.77853 * 212.96127 * 21 13 12 24 24 O 1.42903 * 109.47143 * 295.00307 * 23 21 13 25 25 H 0.96998 * 119.99766 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00002 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46823 * 305.29125 * 12 10 9 28 28 H 1.09006 * 109.46835 * 65.28781 * 12 10 9 29 29 H 1.07999 * 119.90674 * 0.31284 * 15 14 13 30 30 H 1.08003 * 119.86897 * 179.97438 * 16 15 14 31 31 H 1.07993 * 120.06325 * 179.86635 * 17 16 15 32 32 H 1.08002 * 119.95462 * 179.97438 * 18 17 16 33 33 H 1.08993 * 110.74833 * 45.49556 * 20 19 18 34 34 H 1.09004 * 110.74069 * 282.15041 * 20 19 18 35 35 H 1.08998 * 109.46926 * 54.99672 * 23 21 13 36 36 H 1.08996 * 109.47424 * 174.99933 * 23 21 13 37 37 H 0.96698 * 114.00241 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 -0.0047 13 7 2.1924 -5.9769 0.1255 14 6 1.5925 -7.1912 -0.2304 15 6 1.2909 -7.7050 -1.4907 16 6 0.6841 -8.9377 -1.6102 17 6 0.3716 -9.6732 -0.4814 18 6 0.6708 -9.1717 0.7724 19 6 1.2791 -7.9403 0.8972 20 6 1.7206 -7.1559 2.1168 21 6 2.6777 -6.0998 1.5172 22 1 2.5847 -5.1504 2.0444 23 6 4.1237 -6.5990 1.5457 24 8 4.1793 -7.9277 1.0227 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.5436 -4.8824 0.8306 28 1 0.6944 -4.9610 -0.9412 29 1 1.5324 -7.1358 -2.3762 30 1 0.4524 -9.3305 -2.5892 31 1 -0.1054 -10.6372 -0.5788 32 1 0.4270 -9.7449 1.6547 33 1 2.2488 -7.8000 2.8197 34 1 0.8676 -6.6762 2.5968 35 1 4.7466 -5.9429 0.9377 36 1 4.4885 -6.5973 2.5728 37 1 5.0681 -8.3086 1.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595658338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:02 Heat of formation + Delta-G solvation = -60.743711 kcal Electronic energy + Delta-G solvation = -21411.103316 eV Core-core repulsion = 18152.736497 eV Total energy + Delta-G solvation = -3258.366819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98889 -39.88568 -38.15173 -36.80718 -35.90507 -33.47220 -33.13672 -30.94950 -30.75215 -28.26258 -26.91605 -25.98696 -22.91886 -22.12892 -21.82814 -20.86365 -19.90156 -18.42818 -17.94263 -17.22958 -17.03174 -16.65040 -16.15844 -16.03929 -15.82119 -15.43865 -15.36542 -14.61129 -14.49945 -14.21162 -13.87196 -13.67813 -13.51506 -13.20778 -13.16381 -12.89006 -12.60870 -12.41529 -12.23174 -12.12062 -12.03503 -11.66592 -11.51713 -10.92505 -10.62838 -10.07879 -10.02540 -9.61308 -8.72636 -8.47663 -5.96657 0.50206 0.56955 1.35863 1.41487 1.55710 2.00787 2.25973 2.54009 2.91491 3.18385 3.23043 3.39326 3.69005 3.81451 3.95204 4.15300 4.19896 4.25122 4.32589 4.41343 4.44826 4.58712 4.65107 4.66901 4.74085 4.83304 4.99503 5.02012 5.22111 5.40266 5.51535 5.60406 5.68445 5.91639 5.94031 6.05931 6.43211 6.58361 6.94801 7.11051 7.53083 8.08304 8.70124 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.004431 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.685920 B = 6317.476256 C = 6812.764941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.444 3.556 11 O -0.610 6.610 12 C 0.062 3.938 13 N -0.482 5.482 14 C 0.084 3.916 15 C -0.135 4.135 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.092 4.092 21 C 0.080 3.920 22 H 0.085 0.915 23 C 0.101 3.899 24 O -0.571 6.571 25 H 0.278 0.722 26 H 0.395 0.605 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -17.859 3.093 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.230 3.770 11 O -0.496 6.496 12 C -0.067 4.067 13 N -0.199 5.199 14 C -0.012 4.012 15 C -0.155 4.155 16 C -0.126 4.126 17 C -0.152 4.152 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.027 4.027 22 H 0.103 0.897 23 C 0.023 3.977 24 O -0.378 6.378 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.060 -17.410 2.699 17.618 hybrid contribution 0.053 1.091 0.326 1.140 sum -0.007 -16.319 3.025 16.597 Atomic orbital electron populations 1.69684 1.06896 1.29268 1.50349 1.26044 0.96513 1.02400 0.96218 0.84862 0.78036 0.77047 0.78335 1.19745 1.19681 1.19501 1.19698 0.92694 0.83806 1.49860 0.90194 1.41925 1.09285 1.04644 1.65165 1.20540 0.88253 0.85540 0.82630 1.90485 1.15380 1.87716 1.56009 1.21803 0.92945 0.88390 1.03523 1.59477 1.34572 1.01524 1.24282 1.19653 0.95572 0.91112 0.94851 1.20673 1.02346 0.97511 0.94938 1.21152 0.97980 0.93232 1.00219 1.21349 1.01303 1.00968 0.91581 1.20649 0.98222 0.93754 0.98835 1.21009 1.00101 0.97164 0.94815 1.21578 0.98797 0.96433 0.96170 1.22725 0.95259 0.98234 0.86529 0.89681 1.21909 0.94565 0.83559 0.97673 1.86528 1.35067 1.29067 1.87156 0.91279 0.77105 0.90925 0.88157 0.86965 0.83479 0.83008 0.84350 0.88054 0.89750 0.94913 0.90851 0.76329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.91 5.29 -306.98 -1.62 -31.53 16 10 C 0.44 21.77 7.25 87.66 0.64 22.40 16 11 O -0.61 -34.28 15.54 -3.05 -0.05 -34.33 16 12 C 0.06 2.40 5.23 85.56 0.45 2.85 16 13 N -0.48 -17.82 4.27 -669.36 -2.86 -20.68 16 14 C 0.08 2.74 4.85 38.28 0.19 2.93 16 15 C -0.13 -3.98 10.04 22.47 0.23 -3.75 16 16 C -0.11 -2.45 10.02 22.21 0.22 -2.23 16 17 C -0.13 -2.73 10.06 22.30 0.22 -2.50 16 18 C -0.10 -2.20 10.03 22.21 0.22 -1.98 16 19 C -0.13 -3.61 5.42 -19.49 -0.11 -3.71 16 20 C -0.09 -2.43 6.14 30.68 0.19 -2.24 16 21 C 0.08 2.63 2.66 45.28 0.12 2.75 16 22 H 0.09 3.06 7.30 -2.39 -0.02 3.04 16 23 C 0.10 2.99 6.94 71.98 0.50 3.49 16 24 O -0.57 -15.46 11.64 -148.98 -1.73 -17.20 16 25 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 27 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 28 H 0.10 3.63 7.95 -2.38 -0.02 3.61 16 29 H 0.11 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.10 2.32 7.87 -2.39 -0.02 2.30 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.39 6.90 9.12 -74.06 -0.68 6.22 16 Total: -1.00 -70.89 314.70 -0.11 -71.00 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.30 Total: 37.67 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.15 Total: -0.27 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -4.20 Total: -101.90 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -1.78 Total: -51.53 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.89 -0.11 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.252 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds