Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86799 * 119.99555 * 2 1 4 4 H 1.48498 * 109.47505 * 272.59773 * 3 2 1 5 5 H 1.48496 * 109.47260 * 32.59864 * 3 2 1 6 6 H 1.48507 * 109.46941 * 152.59537 * 3 2 1 7 7 C 1.39892 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99382 * 347.76513 * 7 2 1 9 9 C 1.41150 * 120.00056 * 167.76418 * 7 2 1 10 10 C 1.40868 * 120.16660 * 328.77771 * 9 7 2 11 11 C 1.36376 * 119.82780 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.16785 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.82927 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00007 * 35.46756 * 13 12 11 15 15 O 1.21582 * 120.00088 * 355.60078 * 14 13 12 16 16 N 1.34778 * 119.99762 * 175.59406 * 14 13 12 17 17 C 1.46503 * 120.00070 * 179.97438 * 16 14 13 18 18 H 1.09003 * 112.85084 * 336.20543 * 17 16 14 19 19 C 1.53780 * 113.61039 * 107.50215 * 17 16 14 20 20 C 1.53781 * 87.07863 * 89.11996 * 19 17 16 21 21 H 1.09002 * 113.61630 * 270.88282 * 20 19 17 22 22 O 1.42908 * 113.61755 * 139.97699 * 20 19 17 23 23 C 1.53779 * 113.61825 * 205.00362 * 17 16 14 24 24 C 1.39479 * 120.33226 * 0.23443 * 12 11 10 25 25 C 1.36370 * 120.16915 * 359.48024 * 24 12 11 26 26 H 0.96995 * 120.00700 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.07989 * 359.95831 * 10 9 7 28 28 H 1.08001 * 119.91078 * 180.02562 * 11 10 9 29 29 H 0.97003 * 119.99800 * 215.74188 * 13 12 11 30 30 H 0.96997 * 120.00085 * 0.02562 * 16 14 13 31 31 H 1.09002 * 113.61343 * 203.66082 * 19 17 16 32 32 H 1.08994 * 113.62066 * 334.57199 * 19 17 16 33 33 H 0.96695 * 113.99677 * 82.49951 * 22 20 19 34 34 H 1.08998 * 113.60926 * 25.43479 * 23 17 16 35 35 H 1.09000 * 113.61299 * 156.33362 * 23 17 16 36 36 H 1.08005 * 119.90904 * 179.72966 * 24 12 11 37 37 H 1.08001 * 120.08594 * 180.28059 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4353 2.0783 -1.3986 5 1 1.4687 2.6362 0.7543 6 1 3.5667 1.4251 0.6445 7 6 2.0084 -1.2114 -0.0005 8 1 1.4868 -2.1362 0.1973 9 6 3.3959 -1.2251 -0.2596 10 6 3.9655 -0.2629 -1.1164 11 6 5.3069 -0.2822 -1.3615 12 6 6.1143 -1.2516 -0.7667 13 7 7.4830 -1.2651 -1.0222 14 6 8.1497 -0.1051 -1.1843 15 8 7.5438 0.9490 -1.1871 16 7 9.4881 -0.1136 -1.3431 17 6 10.2128 1.1473 -1.5198 18 1 9.5830 1.9462 -1.9113 19 6 11.0409 1.5592 -0.2912 20 6 12.1980 0.7476 -0.8971 21 1 12.2016 -0.2999 -0.5955 22 8 13.4745 1.3731 -0.7503 23 6 11.5468 0.9914 -2.2688 24 6 5.5567 -2.2109 0.0786 25 6 4.2178 -2.2008 0.3377 26 1 -0.4851 0.8399 0.0004 27 1 3.3414 0.4879 -1.5782 28 1 5.7451 0.4551 -2.0179 29 1 7.9559 -2.1095 -1.0876 30 1 9.9714 -0.9546 -1.3411 31 1 11.2396 2.6296 -0.2375 32 1 10.6645 1.1500 0.6463 33 1 13.8891 1.2234 0.1103 34 1 11.5787 0.1238 -2.9277 35 1 11.8837 1.9066 -2.7557 36 1 6.1876 -2.9611 0.5321 37 1 3.7882 -2.9414 0.9960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596658739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -29.671278 kcal Electronic energy + Delta-G solvation = -20576.798510 eV Core-core repulsion = 17319.779093 eV Total energy + Delta-G solvation = -3257.019417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50283 -39.18810 -37.55162 -35.61965 -34.43953 -33.23043 -32.40826 -29.91383 -29.34526 -26.04408 -25.23906 -24.08677 -21.83403 -21.61052 -20.19063 -19.65906 -18.48918 -17.66035 -17.36924 -16.86643 -15.71405 -15.56139 -15.05173 -14.99589 -14.30857 -14.08325 -13.79550 -13.55833 -12.88718 -12.69710 -12.61707 -12.50762 -12.23801 -12.02379 -11.90582 -11.63835 -10.91588 -10.75975 -10.74376 -10.56393 -10.19242 -10.07779 -9.74932 -9.64592 -9.11484 -9.01577 -9.00515 -7.76094 -7.13759 -6.88429 -4.40928 2.47378 2.72782 2.84944 3.19168 3.29123 3.41160 3.51378 3.87829 4.06306 4.20625 4.37163 4.43852 4.56030 4.61998 4.67070 5.33197 5.43679 5.46122 5.52686 5.68602 5.73049 5.80548 5.92508 6.17678 6.44652 6.50801 6.67243 6.77099 6.91025 7.00701 7.20236 7.29242 7.46008 7.62438 7.67392 7.90703 8.11269 8.31072 8.38009 8.64907 8.83044 8.94360 10.13613 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.035216 B = 0.003694 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.897766 B = 7578.595993 C = 8073.263755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.443 4.443 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.228 4.228 11 C -0.062 4.062 12 C 0.010 3.990 13 N -0.666 5.666 14 C 0.697 3.303 15 O -0.575 6.575 16 N -0.735 5.735 17 C 0.145 3.855 18 H 0.110 0.890 19 C -0.183 4.183 20 C 0.075 3.925 21 H 0.080 0.920 22 O -0.561 6.561 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.196 4.196 26 H 0.285 0.715 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.393 0.607 30 H 0.392 0.608 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.378 0.622 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.348 -0.540 -1.411 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.472 4.472 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.248 4.248 11 C -0.083 4.083 12 C -0.082 4.082 13 N -0.313 5.313 14 C 0.398 3.602 15 O -0.451 6.451 16 N -0.391 5.391 17 C 0.038 3.962 18 H 0.128 0.872 19 C -0.222 4.222 20 C 0.016 3.984 21 H 0.097 0.903 22 O -0.367 6.367 23 C -0.174 4.174 24 C -0.116 4.116 25 C -0.216 4.216 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.226 0.774 30 H 0.226 0.774 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.225 0.775 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.365 0.727 -2.000 20.476 hybrid contribution 0.816 -0.310 0.608 1.064 sum 21.181 0.417 -1.392 21.231 Atomic orbital electron populations 1.69675 1.07963 1.30187 1.36163 1.26155 0.94815 1.01701 0.90928 0.86306 0.80995 0.79531 0.79123 1.19701 1.22163 1.16492 1.19456 0.91361 0.95528 1.40850 0.89135 1.17803 0.93471 0.90979 0.89407 1.20740 0.94603 1.04235 1.05209 1.20488 0.92863 0.97088 0.97819 1.16914 0.80236 1.03914 1.07160 1.42036 1.08212 1.06395 1.74607 1.15992 0.81095 0.84769 0.78381 1.90922 1.66745 1.30246 1.57219 1.44807 1.05834 1.08602 1.79822 1.21358 0.91718 0.87209 0.95953 0.87182 1.24181 0.96810 1.01895 0.99335 1.23473 0.82030 0.95498 0.97385 0.90256 1.86515 1.33796 1.76515 1.39841 1.23479 0.94044 1.03900 0.95991 1.20160 0.95599 0.98451 0.97438 1.20595 0.92314 1.03783 1.04911 0.90490 0.88001 0.86899 0.77417 0.77404 0.88460 0.90768 0.77516 0.90312 0.87897 0.88617 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.23 13.93 55.54 0.77 -21.45 16 2 C 0.08 2.21 5.47 -17.34 -0.09 2.12 16 3 Si 0.91 22.11 24.39 -169.99 -4.15 17.97 16 4 H -0.27 -6.44 6.66 56.52 0.38 -6.06 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.24 -6.15 6.67 56.52 0.38 -5.77 16 7 C -0.44 -12.14 9.59 -37.86 -0.36 -12.50 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.09 2.23 5.13 -106.80 -0.55 1.68 16 10 C -0.23 -5.78 6.93 -39.26 -0.27 -6.05 16 11 C -0.06 -1.48 8.61 -39.79 -0.34 -1.82 16 12 C 0.01 0.22 6.30 -83.57 -0.53 -0.31 16 13 N -0.67 -10.80 5.31 -14.10 -0.07 -10.88 16 14 C 0.70 11.64 8.39 -86.92 -0.73 10.91 16 15 O -0.57 -12.34 13.37 5.29 0.07 -12.27 16 16 N -0.74 -8.39 5.27 -57.88 -0.30 -8.70 16 17 C 0.14 1.55 4.32 -67.12 -0.29 1.26 16 18 H 0.11 1.42 7.46 -51.93 -0.39 1.04 16 19 C -0.18 -1.73 7.71 -25.92 -0.20 -1.93 16 20 C 0.08 0.59 5.09 -25.92 -0.13 0.45 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 O -0.56 -4.59 13.67 -35.23 -0.48 -5.07 16 23 C -0.14 -1.12 7.66 -25.92 -0.20 -1.32 16 24 C -0.10 -1.95 9.90 -39.79 -0.39 -2.35 16 25 C -0.20 -4.49 9.74 -39.26 -0.38 -4.88 16 26 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 27 H 0.10 2.61 4.40 -52.49 -0.23 2.38 16 28 H 0.11 2.69 6.23 -52.49 -0.33 2.36 16 29 H 0.39 4.70 8.83 -40.82 -0.36 4.34 16 30 H 0.39 3.15 8.72 -40.82 -0.36 2.79 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.38 1.54 9.12 45.56 0.42 1.96 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -32.74 309.17 -7.79 -40.53 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.81 Total: 9.95 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -4.47 Total: -14.73 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.39 Total: -41.03 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.41 Total: -17.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.15 Total: 17.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.74 -7.79 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596658739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.856 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds