Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86799 * 119.99555 * 2 1 4 4 H 1.48498 * 109.47505 * 272.59773 * 3 2 1 5 5 H 1.48496 * 109.47260 * 32.59864 * 3 2 1 6 6 H 1.48507 * 109.46941 * 152.59537 * 3 2 1 7 7 C 1.39892 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99382 * 347.76513 * 7 2 1 9 9 C 1.41150 * 120.00056 * 167.76418 * 7 2 1 10 10 C 1.40868 * 120.16660 * 328.77771 * 9 7 2 11 11 C 1.36376 * 119.82780 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.16785 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.82927 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00007 * 35.46756 * 13 12 11 15 15 O 1.21582 * 120.00088 * 355.60078 * 14 13 12 16 16 N 1.34778 * 119.99762 * 175.59406 * 14 13 12 17 17 C 1.46503 * 120.00070 * 179.97438 * 16 14 13 18 18 H 1.09003 * 112.85084 * 336.20543 * 17 16 14 19 19 C 1.53780 * 113.61039 * 107.50215 * 17 16 14 20 20 C 1.53781 * 87.07863 * 89.11996 * 19 17 16 21 21 H 1.09002 * 113.61630 * 270.88282 * 20 19 17 22 22 O 1.42908 * 113.61755 * 139.97699 * 20 19 17 23 23 C 1.53779 * 113.61825 * 205.00362 * 17 16 14 24 24 C 1.39479 * 120.33226 * 0.23443 * 12 11 10 25 25 C 1.36370 * 120.16915 * 359.48024 * 24 12 11 26 26 H 0.96995 * 120.00700 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.07989 * 359.95831 * 10 9 7 28 28 H 1.08001 * 119.91078 * 180.02562 * 11 10 9 29 29 H 0.97003 * 119.99800 * 215.74188 * 13 12 11 30 30 H 0.96997 * 120.00085 * 0.02562 * 16 14 13 31 31 H 1.09002 * 113.61343 * 203.66082 * 19 17 16 32 32 H 1.08994 * 113.62066 * 334.57199 * 19 17 16 33 33 H 0.96695 * 113.99677 * 82.49951 * 22 20 19 34 34 H 1.08998 * 113.60926 * 25.43479 * 23 17 16 35 35 H 1.09000 * 113.61299 * 156.33362 * 23 17 16 36 36 H 1.08005 * 119.90904 * 179.72966 * 24 12 11 37 37 H 1.08001 * 120.08594 * 180.28059 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4353 2.0783 -1.3986 5 1 1.4687 2.6362 0.7543 6 1 3.5667 1.4251 0.6445 7 6 2.0084 -1.2114 -0.0005 8 1 1.4868 -2.1362 0.1973 9 6 3.3959 -1.2251 -0.2596 10 6 3.9655 -0.2629 -1.1164 11 6 5.3069 -0.2822 -1.3615 12 6 6.1143 -1.2516 -0.7667 13 7 7.4830 -1.2651 -1.0222 14 6 8.1497 -0.1051 -1.1843 15 8 7.5438 0.9490 -1.1871 16 7 9.4881 -0.1136 -1.3431 17 6 10.2128 1.1473 -1.5198 18 1 9.5830 1.9462 -1.9113 19 6 11.0409 1.5592 -0.2912 20 6 12.1980 0.7476 -0.8971 21 1 12.2016 -0.2999 -0.5955 22 8 13.4745 1.3731 -0.7503 23 6 11.5468 0.9914 -2.2688 24 6 5.5567 -2.2109 0.0786 25 6 4.2178 -2.2008 0.3377 26 1 -0.4851 0.8399 0.0004 27 1 3.3414 0.4879 -1.5782 28 1 5.7451 0.4551 -2.0179 29 1 7.9559 -2.1095 -1.0876 30 1 9.9714 -0.9546 -1.3411 31 1 11.2396 2.6296 -0.2375 32 1 10.6645 1.1500 0.6463 33 1 13.8891 1.2234 0.1103 34 1 11.5787 0.1238 -2.9277 35 1 11.8837 1.9066 -2.7557 36 1 6.1876 -2.9611 0.5321 37 1 3.7882 -2.9414 0.9960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596658739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -55.792964 kcal Electronic energy + Delta-G solvation = -20577.931231 eV Core-core repulsion = 17319.779093 eV Total energy + Delta-G solvation = -3258.152139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69442 -40.30818 -39.14355 -36.47458 -36.05511 -34.96404 -33.60861 -31.73205 -31.11083 -26.83882 -26.74141 -25.14395 -23.60662 -23.12267 -21.76466 -20.51495 -19.77530 -19.29333 -18.47491 -18.28959 -17.21065 -16.55079 -16.44325 -16.13085 -15.68014 -15.56378 -15.24847 -14.98817 -14.53054 -14.35954 -14.10527 -13.81368 -13.53363 -13.36448 -12.85864 -12.70030 -12.64441 -12.40783 -12.32084 -12.07267 -11.69548 -11.46669 -11.25340 -11.00318 -10.73181 -10.71415 -10.10537 -9.58920 -8.91763 -8.87458 -6.42972 0.66678 0.87283 1.24186 1.34844 1.45476 1.65562 2.08566 2.11387 2.64717 3.26756 3.34095 3.49931 3.51132 3.69966 3.87778 4.06321 4.23898 4.37017 4.59663 4.66664 4.76278 4.79019 4.94637 4.96505 4.98370 5.00587 5.07410 5.12026 5.34023 5.52769 5.58296 5.69153 5.88569 5.94144 6.12268 6.24953 6.40533 6.72059 6.85110 6.91055 7.12716 7.61788 8.19758 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.035216 B = 0.003694 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.897766 B = 7578.595993 C = 8073.263755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.051 3.949 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.476 4.476 8 H 0.066 0.934 9 C 0.063 3.937 10 C -0.239 4.239 11 C -0.084 4.084 12 C 0.041 3.959 13 N -0.656 5.656 14 C 0.695 3.305 15 O -0.625 6.625 16 N -0.708 5.708 17 C 0.131 3.869 18 H 0.081 0.919 19 C -0.182 4.182 20 C 0.088 3.912 21 H 0.104 0.896 22 O -0.577 6.577 23 C -0.126 4.126 24 C -0.088 4.088 25 C -0.196 4.196 26 H 0.292 0.708 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.419 0.581 30 H 0.415 0.585 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.361 -1.722 -1.225 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.163 4.163 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.259 4.259 11 C -0.104 4.104 12 C -0.054 4.054 13 N -0.305 5.305 14 C 0.395 3.605 15 O -0.505 6.505 16 N -0.364 5.364 17 C 0.025 3.975 18 H 0.100 0.900 19 C -0.221 4.221 20 C 0.029 3.971 21 H 0.122 0.878 22 O -0.385 6.385 23 C -0.165 4.165 24 C -0.108 4.108 25 C -0.216 4.216 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.257 0.743 30 H 0.252 0.748 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.165 0.835 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 24.465 -0.499 -1.813 24.537 hybrid contribution -0.074 -0.012 0.514 0.520 sum 24.392 -0.511 -1.299 24.431 Atomic orbital electron populations 1.69692 1.08632 1.31082 1.38765 1.26613 0.95304 1.03475 0.90874 0.85573 0.79071 0.77662 0.78961 1.19590 1.20447 1.18654 1.19444 0.92521 0.94966 1.43665 0.91599 1.17945 0.93247 0.92437 0.90388 1.20762 0.95406 1.04205 1.05546 1.20594 0.92619 0.98399 0.98833 1.17070 0.82126 1.01767 1.04393 1.41811 1.06495 1.07815 1.74345 1.16182 0.82482 0.83908 0.77899 1.90911 1.68262 1.32115 1.59222 1.44510 1.03907 1.10098 1.77928 1.21466 0.92192 0.86177 0.97711 0.90034 1.24164 0.97505 1.02122 0.98347 1.23422 0.81326 0.96176 0.96180 0.87822 1.86474 1.33721 1.76824 1.41471 1.23411 0.91818 1.04642 0.96586 1.20543 0.95006 0.98897 0.96348 1.20889 0.93409 1.02920 1.04375 0.89757 0.89221 0.87431 0.74298 0.74781 0.88907 0.91417 0.75417 0.88623 0.88045 0.83524 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.45 13.93 21.82 0.30 -48.14 16 2 C 0.05 2.85 5.47 85.23 0.47 3.32 16 3 Si 0.96 47.14 24.39 68.60 1.67 48.82 16 4 H -0.27 -12.96 6.66 99.48 0.66 -12.30 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -13.56 6.67 99.48 0.66 -12.89 16 7 C -0.48 -27.15 9.59 23.39 0.22 -26.93 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 9 C 0.06 3.26 5.13 -21.28 -0.11 3.15 16 10 C -0.24 -12.29 6.93 22.48 0.16 -12.14 16 11 C -0.08 -3.93 8.61 22.14 0.19 -3.74 16 12 C 0.04 1.59 6.30 38.56 0.24 1.83 16 13 N -0.66 -18.72 5.31 -316.78 -1.68 -20.40 16 14 C 0.69 21.39 8.39 179.05 1.50 22.89 16 15 O -0.62 -26.32 13.37 -3.97 -0.05 -26.38 16 16 N -0.71 -13.81 5.27 -455.29 -2.40 -16.21 16 17 C 0.13 2.54 4.32 45.52 0.20 2.74 16 18 H 0.08 2.09 7.46 -2.39 -0.02 2.07 16 19 C -0.18 -3.03 7.71 31.12 0.24 -2.79 16 20 C 0.09 1.04 5.09 31.12 0.16 1.20 16 21 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 22 O -0.58 -7.47 13.67 -148.98 -2.04 -9.51 16 23 C -0.13 -1.69 7.66 31.12 0.24 -1.45 16 24 C -0.09 -3.23 9.90 22.13 0.22 -3.01 16 25 C -0.20 -8.68 9.74 22.48 0.22 -8.46 16 26 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 27 H 0.09 4.74 4.40 -2.91 -0.01 4.72 16 28 H 0.11 5.14 6.23 -2.91 -0.02 5.12 16 29 H 0.42 7.75 8.83 -92.71 -0.82 6.94 16 30 H 0.41 4.62 8.72 -92.71 -0.81 3.81 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.40 1.86 9.12 -74.06 -0.68 1.18 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -74.12 309.17 -1.50 -75.63 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -1.25 Total: 19.58 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.95 Total: -23.39 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.78 Total: -84.75 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -2.09 Total: -35.88 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.82 kcal Total: -74.12 -1.50 -75.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596658739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.833 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds