Wall clock time and date at job start Mon Mar 30 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47233 * 274.98552 * 3 2 1 5 5 H 1.48503 * 109.47234 * 34.98749 * 3 2 1 6 6 H 1.48506 * 109.46928 * 154.98413 * 3 2 1 7 7 C 1.39933 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00270 * 191.09928 * 7 2 1 9 9 C 1.41440 * 119.99938 * 11.10627 * 7 2 1 10 10 C 1.40787 * 120.17840 * 212.25795 * 9 7 2 11 11 C 1.37704 * 120.04223 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.41211 * 0.30178 * 11 10 9 13 13 C 1.39872 * 120.35769 * 359.44385 * 12 11 10 14 14 C 1.47885 * 120.02974 * 180.26156 * 13 12 11 15 15 O 1.21542 * 120.00338 * 189.22708 * 14 13 12 16 16 N 1.34773 * 119.99528 * 9.22461 * 14 13 12 17 17 C 1.43784 * 120.31368 * 186.71649 * 16 14 13 18 18 C 1.53910 * 114.49152 * 270.26839 * 17 16 14 19 19 O 1.45146 * 109.58408 * 319.77661 * 18 17 16 20 20 C 1.39953 * 115.71719 * 320.91647 * 19 18 17 21 21 C 1.53087 * 106.99528 * 96.32711 * 20 19 18 22 22 N 1.39298 * 120.31927 * 6.99172 * 16 14 13 23 23 C 1.39040 * 119.94802 * 0.52893 * 13 12 11 24 24 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97581 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.79648 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.81974 * 179.70376 * 12 11 10 28 28 H 1.09004 * 108.54239 * 31.35358 * 17 16 14 29 29 H 1.08997 * 108.54230 * 148.91445 * 17 16 14 30 30 H 1.09007 * 109.51628 * 199.71684 * 18 17 16 31 31 H 1.08997 * 109.39919 * 79.76723 * 18 17 16 32 32 H 1.08999 * 109.95432 * 336.95762 * 20 19 18 33 33 H 1.09000 * 110.01868 * 215.73447 * 20 19 18 34 34 H 1.08998 * 108.74795 * 154.90471 * 21 20 19 35 35 H 1.08996 * 108.74567 * 36.79450 * 21 20 19 36 36 H 1.00907 * 111.00457 * 230.45070 * 22 16 14 37 37 H 1.08000 * 120.20343 * 179.77327 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4964 2.6200 0.8028 6 1 3.5886 1.4120 0.5921 7 6 2.0080 -1.2118 -0.0005 8 1 3.0729 -1.2207 0.1795 9 6 1.3207 -2.4252 -0.2370 10 6 1.7514 -3.6146 0.3809 11 6 1.0798 -4.7942 0.1491 12 6 -0.0164 -4.8220 -0.6950 13 6 -0.4621 -3.6494 -1.3136 14 6 -1.6379 -3.6863 -2.2098 15 8 -1.9248 -2.7114 -2.8765 16 7 -2.3912 -4.8012 -2.2874 17 6 -3.4470 -4.8976 -3.2587 18 6 -4.8144 -4.3902 -2.7671 19 8 -5.0221 -4.8061 -1.3921 20 6 -4.5765 -6.0940 -1.0733 21 6 -3.1819 -5.9458 -0.4595 22 7 -2.1581 -5.8688 -1.4235 23 6 0.2045 -2.4499 -1.0898 24 1 -0.4850 0.8401 0.0004 25 1 2.6090 -3.6018 1.0371 26 1 1.4134 -5.7043 0.6255 27 1 -0.5331 -5.7534 -0.8738 28 1 -3.1633 -4.3186 -4.1376 29 1 -3.5516 -5.9414 -3.5545 30 1 -5.6036 -4.8046 -3.3946 31 1 -4.8389 -3.3021 -2.8247 32 1 -4.5227 -6.7030 -1.9757 33 1 -5.2526 -6.5551 -0.3534 34 1 -2.9908 -6.8023 0.1869 35 1 -3.1606 -5.0405 0.1472 36 1 -2.0760 -6.7356 -1.9337 37 1 -0.1339 -1.5427 -1.5682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597706869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:15 Heat of formation + Delta-G solvation = -3.296961 kcal Electronic energy + Delta-G solvation = -21837.946305 eV Core-core repulsion = 18582.070564 eV Total energy + Delta-G solvation = -3255.875741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57438 -38.28673 -36.84371 -36.17418 -33.47297 -33.16937 -30.35996 -29.30843 -28.58257 -27.74079 -25.15252 -24.04068 -22.14187 -21.19635 -20.77341 -19.30469 -17.87352 -17.47130 -16.71733 -16.04204 -15.71930 -15.18770 -14.94760 -14.72790 -14.66136 -13.84867 -13.79485 -13.20213 -13.01291 -12.64761 -12.40964 -12.34013 -11.84388 -11.74051 -11.50796 -11.07629 -11.00278 -10.90047 -10.71194 -10.37333 -10.08996 -9.92301 -9.53163 -9.12933 -9.09540 -8.64940 -8.23013 -7.46116 -7.23442 -6.58195 -4.26035 2.28578 2.82018 2.96537 3.17230 3.20412 3.28561 3.72551 3.86816 4.06413 4.37118 4.65990 4.79449 4.84711 4.90326 5.02234 5.10817 5.35306 5.51181 5.62156 5.74264 5.76324 5.89580 6.01962 6.31929 6.72732 6.86054 6.96586 7.16254 7.17464 7.19085 7.22500 7.37750 7.55163 7.83276 7.99729 8.12410 8.18311 8.35003 8.66665 8.87013 8.99415 9.02250 10.39191 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.005349 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.351983 B = 5233.476352 C = 5860.712508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.076 0.924 9 C 0.092 3.908 10 C -0.195 4.195 11 C -0.125 4.125 12 C -0.189 4.189 13 C -0.133 4.133 14 C 0.595 3.405 15 O -0.540 6.540 16 N -0.467 5.467 17 C 0.059 3.941 18 C 0.043 3.957 19 O -0.382 6.382 20 C 0.032 3.968 21 C -0.005 4.005 22 N -0.402 5.402 23 C -0.083 4.083 24 H 0.279 0.721 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.341 0.659 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -12.234 -3.613 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.504 4.504 8 H 0.095 0.905 9 C 0.090 3.910 10 C -0.215 4.215 11 C -0.143 4.143 12 C -0.209 4.209 13 C -0.136 4.136 14 C 0.390 3.610 15 O -0.415 6.415 16 N -0.291 5.291 17 C -0.067 4.067 18 C -0.034 4.034 19 O -0.300 6.300 20 C -0.048 4.048 21 C -0.137 4.137 22 N -0.124 5.124 23 C -0.103 4.103 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.168 0.832 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.161 0.839 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.844 -11.003 -3.458 13.948 hybrid contribution -0.422 0.109 -0.495 0.660 sum -8.265 -10.894 -3.953 14.234 Atomic orbital electron populations 1.69772 1.07294 1.29032 1.37006 1.25838 0.94787 1.01019 0.92635 0.86295 0.80322 0.81022 0.78963 1.19524 1.20420 1.18771 1.19458 0.95863 0.90385 1.44688 0.90538 1.17529 0.91663 0.92458 0.89373 1.21276 1.02705 0.93943 1.03537 1.20635 0.97211 0.96389 1.00098 1.22054 0.98650 0.98976 1.01232 1.19298 0.96393 0.95957 1.01974 1.18837 0.81934 0.79187 0.81068 1.90707 1.71982 1.32762 1.46022 1.47460 1.32811 1.14772 1.34066 1.22054 0.88726 1.01682 0.94279 1.23786 0.95258 1.01792 0.82577 1.87708 1.82519 1.31512 1.28293 1.22923 0.96736 0.85690 0.99404 1.22418 0.89621 1.05313 0.96311 1.61588 1.40562 1.01593 1.08674 1.21584 0.96299 0.95506 0.96924 0.90990 0.88982 0.89224 0.83245 0.88636 0.91369 0.91806 0.88392 0.93241 0.89260 0.88740 0.88626 0.83867 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.37 11.11 55.55 0.62 -21.75 16 2 C 0.07 1.94 5.22 -17.34 -0.09 1.85 16 3 Si 0.91 19.79 29.57 -169.99 -5.03 14.76 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -13.00 9.04 -37.73 -0.34 -13.34 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 9 C 0.09 2.51 5.50 -106.87 -0.59 1.93 16 10 C -0.19 -4.77 9.78 -38.81 -0.38 -5.15 16 11 C -0.12 -2.72 10.01 -39.73 -0.40 -3.12 16 12 C -0.19 -4.02 9.05 -38.92 -0.35 -4.37 16 13 C -0.13 -3.21 5.85 -105.04 -0.61 -3.83 16 14 C 0.60 13.16 7.66 -12.31 -0.09 13.06 16 15 O -0.54 -13.41 16.02 5.33 0.09 -13.33 16 16 N -0.47 -7.68 2.79 -62.56 -0.17 -7.86 16 17 C 0.06 0.77 4.99 -5.01 -0.03 0.75 16 18 C 0.04 0.56 7.36 37.63 0.28 0.84 16 19 O -0.38 -5.52 10.24 -32.80 -0.34 -5.86 16 20 C 0.03 0.34 6.46 37.20 0.24 0.59 16 21 C -0.01 -0.06 6.19 -6.93 -0.04 -0.11 16 22 N -0.40 -5.37 2.66 -13.82 -0.04 -5.40 16 23 C -0.08 -2.28 8.18 -38.44 -0.31 -2.59 16 24 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 25 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 26 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.15 2.64 4.56 -86.37 -0.39 2.25 16 28 H 0.10 1.33 7.48 -51.93 -0.39 0.95 16 29 H 0.07 0.66 7.14 -51.93 -0.37 0.29 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.05 0.43 6.61 -51.93 -0.34 0.09 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 36 H 0.34 3.34 8.83 -179.43 -1.58 1.76 16 37 H 0.13 3.73 6.12 -52.49 -0.32 3.41 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -32.36 302.61 -8.94 -41.30 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.90 Total: 7.07 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.72 Total: -13.49 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.41 Total: -35.01 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.25 Total: -19.19 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.36 -8.94 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597706869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.001 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds