Wall clock time and date at job start Mon Mar 30 2020 02:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47233 * 274.98552 * 3 2 1 5 5 H 1.48503 * 109.47234 * 34.98749 * 3 2 1 6 6 H 1.48506 * 109.46928 * 154.98413 * 3 2 1 7 7 C 1.39933 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00270 * 191.09928 * 7 2 1 9 9 C 1.41440 * 119.99938 * 11.10627 * 7 2 1 10 10 C 1.40787 * 120.17840 * 212.25795 * 9 7 2 11 11 C 1.37704 * 120.04223 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.41211 * 0.30178 * 11 10 9 13 13 C 1.39872 * 120.35769 * 359.44385 * 12 11 10 14 14 C 1.47885 * 120.02974 * 180.26156 * 13 12 11 15 15 O 1.21542 * 120.00338 * 189.22708 * 14 13 12 16 16 N 1.34773 * 119.99528 * 9.22461 * 14 13 12 17 17 C 1.43784 * 120.31368 * 186.71649 * 16 14 13 18 18 C 1.53910 * 114.49152 * 270.26839 * 17 16 14 19 19 O 1.45146 * 109.58408 * 319.77661 * 18 17 16 20 20 C 1.39953 * 115.71719 * 320.91647 * 19 18 17 21 21 C 1.53087 * 106.99528 * 96.32711 * 20 19 18 22 22 N 1.39298 * 120.31927 * 6.99172 * 16 14 13 23 23 C 1.39040 * 119.94802 * 0.52893 * 13 12 11 24 24 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97581 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.79648 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.81974 * 179.70376 * 12 11 10 28 28 H 1.09004 * 108.54239 * 31.35358 * 17 16 14 29 29 H 1.08997 * 108.54230 * 148.91445 * 17 16 14 30 30 H 1.09007 * 109.51628 * 199.71684 * 18 17 16 31 31 H 1.08997 * 109.39919 * 79.76723 * 18 17 16 32 32 H 1.08999 * 109.95432 * 336.95762 * 20 19 18 33 33 H 1.09000 * 110.01868 * 215.73447 * 20 19 18 34 34 H 1.08998 * 108.74795 * 154.90471 * 21 20 19 35 35 H 1.08996 * 108.74567 * 36.79450 * 21 20 19 36 36 H 1.00907 * 111.00457 * 230.45070 * 22 16 14 37 37 H 1.08000 * 120.20343 * 179.77327 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4964 2.6200 0.8028 6 1 3.5886 1.4120 0.5921 7 6 2.0080 -1.2118 -0.0005 8 1 3.0729 -1.2207 0.1795 9 6 1.3207 -2.4252 -0.2370 10 6 1.7514 -3.6146 0.3809 11 6 1.0798 -4.7942 0.1491 12 6 -0.0164 -4.8220 -0.6950 13 6 -0.4621 -3.6494 -1.3136 14 6 -1.6379 -3.6863 -2.2098 15 8 -1.9248 -2.7114 -2.8765 16 7 -2.3912 -4.8012 -2.2874 17 6 -3.4470 -4.8976 -3.2587 18 6 -4.8144 -4.3902 -2.7671 19 8 -5.0221 -4.8061 -1.3921 20 6 -4.5765 -6.0940 -1.0733 21 6 -3.1819 -5.9458 -0.4595 22 7 -2.1581 -5.8688 -1.4235 23 6 0.2045 -2.4499 -1.0898 24 1 -0.4850 0.8401 0.0004 25 1 2.6090 -3.6018 1.0371 26 1 1.4134 -5.7043 0.6255 27 1 -0.5331 -5.7534 -0.8738 28 1 -3.1633 -4.3186 -4.1376 29 1 -3.5516 -5.9414 -3.5545 30 1 -5.6036 -4.8046 -3.3946 31 1 -4.8389 -3.3021 -2.8247 32 1 -4.5227 -6.7030 -1.9757 33 1 -5.2526 -6.5551 -0.3534 34 1 -2.9908 -6.8023 0.1869 35 1 -3.1606 -5.0405 0.1472 36 1 -2.0760 -6.7356 -1.9337 37 1 -0.1339 -1.5427 -1.5682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597706869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:14 Heat of formation + Delta-G solvation = -25.665404 kcal Electronic energy + Delta-G solvation = -21838.916273 eV Core-core repulsion = 18582.070564 eV Total energy + Delta-G solvation = -3256.845710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86793 -39.76031 -38.65668 -37.40695 -35.40547 -34.32130 -32.13931 -31.20808 -29.89958 -28.76696 -27.10240 -25.43390 -23.34442 -22.73715 -22.46945 -20.83088 -19.49382 -18.77126 -17.95134 -17.60238 -17.02327 -16.78495 -16.47086 -16.19634 -15.78774 -15.47472 -15.24956 -14.88157 -14.61723 -14.26880 -14.08500 -13.62397 -13.36160 -12.93188 -12.84483 -12.79890 -12.65630 -12.39176 -12.17308 -11.86956 -11.83050 -11.56933 -11.16742 -11.06813 -10.68444 -9.98953 -9.50508 -9.31456 -9.16712 -8.54750 -6.32916 0.43701 1.11334 1.35703 1.49235 1.51487 1.53742 2.09274 2.23339 2.80988 2.88777 3.28963 3.67473 3.76722 3.85783 3.97600 4.11750 4.22183 4.36056 4.46942 4.57703 4.60813 4.73404 4.81676 4.89713 5.05558 5.12784 5.24142 5.31707 5.40926 5.57614 5.63921 6.02139 6.12773 6.16238 6.19736 6.29578 6.41004 6.62565 6.76931 6.97910 7.05281 7.27743 8.44182 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.005349 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.351983 B = 5233.476352 C = 5860.712508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.025 3.975 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.510 4.510 8 H 0.078 0.922 9 C 0.056 3.944 10 C -0.201 4.201 11 C -0.122 4.122 12 C -0.165 4.165 13 C -0.147 4.147 14 C 0.586 3.414 15 O -0.584 6.584 16 N -0.456 5.456 17 C 0.053 3.947 18 C 0.044 3.956 19 O -0.414 6.414 20 C 0.030 3.970 21 C -0.003 4.003 22 N -0.414 5.414 23 C -0.121 4.121 24 H 0.280 0.720 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.195 0.805 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.048 0.952 36 H 0.371 0.629 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -15.966 -3.489 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.541 4.541 8 H 0.096 0.904 9 C 0.055 3.945 10 C -0.221 4.221 11 C -0.140 4.140 12 C -0.185 4.185 13 C -0.150 4.150 14 C 0.379 3.621 15 O -0.463 6.463 16 N -0.276 5.276 17 C -0.072 4.072 18 C -0.033 4.033 19 O -0.333 6.333 20 C -0.048 4.048 21 C -0.134 4.134 22 N -0.140 5.140 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.155 0.845 27 H 0.211 0.789 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.066 0.934 36 H 0.195 0.805 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.434 -14.818 -3.335 17.373 hybrid contribution -0.341 0.987 -0.522 1.168 sum -8.774 -13.830 -3.857 16.827 Atomic orbital electron populations 1.69901 1.09046 1.29815 1.38825 1.26763 0.95499 1.04638 0.91706 0.85181 0.79228 0.76173 0.78998 1.19326 1.19552 1.17496 1.19745 0.96096 0.91629 1.46649 0.90422 1.17872 0.92435 0.93871 0.90373 1.21574 1.03170 0.94105 1.03234 1.21168 0.96391 0.97031 0.99440 1.22741 0.97653 0.99438 0.98622 1.19678 0.97027 0.95884 1.02393 1.18629 0.82354 0.80416 0.80651 1.90674 1.73074 1.34846 1.47657 1.47161 1.32208 1.13936 1.34312 1.22338 0.87565 1.04579 0.92678 1.23794 0.96233 1.00303 0.82962 1.87688 1.82848 1.33844 1.28954 1.23132 0.95872 0.84594 1.01235 1.22398 0.90502 1.04695 0.95783 1.61170 1.42060 1.01729 1.09003 1.21355 0.98270 0.95678 0.98882 0.90974 0.87861 0.84487 0.78931 0.89963 0.86207 0.87732 0.91790 0.90051 0.86986 0.84565 0.93382 0.80488 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.54 11.11 21.82 0.24 -50.30 16 2 C 0.03 1.42 5.22 85.25 0.45 1.86 16 3 Si 0.98 42.48 29.57 68.60 2.03 44.51 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.51 -29.56 9.04 23.47 0.21 -29.34 16 8 H 0.08 4.27 7.87 -2.91 -0.02 4.25 16 9 C 0.06 3.23 5.50 -21.32 -0.12 3.11 16 10 C -0.20 -9.86 9.78 22.77 0.22 -9.64 16 11 C -0.12 -5.01 10.01 22.18 0.22 -4.78 16 12 C -0.17 -6.67 9.05 22.70 0.21 -6.47 16 13 C -0.15 -7.25 5.85 -20.13 -0.12 -7.37 16 14 C 0.59 26.58 7.66 86.80 0.66 27.24 16 15 O -0.58 -30.86 16.02 -3.85 -0.06 -30.93 16 16 N -0.46 -14.21 2.79 -470.12 -1.31 -15.53 16 17 C 0.05 1.27 4.99 87.19 0.44 1.70 16 18 C 0.04 1.06 7.36 72.29 0.53 1.60 16 19 O -0.41 -11.13 10.24 -140.29 -1.44 -12.56 16 20 C 0.03 0.52 6.46 72.01 0.47 0.98 16 21 C 0.00 -0.06 6.19 87.43 0.54 0.49 16 22 N -0.41 -9.39 2.66 -197.63 -0.53 -9.91 16 23 C -0.12 -7.09 8.18 23.01 0.19 -6.90 16 24 H 0.28 15.47 8.30 -92.71 -0.77 14.70 16 25 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 26 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 27 H 0.19 5.95 4.56 -47.19 -0.22 5.74 16 28 H 0.08 2.23 7.48 -2.38 -0.02 2.21 16 29 H 0.12 1.65 7.14 -2.39 -0.02 1.63 16 30 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 0.89 6.61 -2.39 -0.02 0.87 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.48 8.04 -2.39 -0.02 1.46 16 36 H 0.37 5.01 8.83 -208.91 -1.84 3.16 16 37 H 0.08 5.55 6.12 -2.91 -0.02 5.53 16 Total: -1.00 -79.56 302.61 1.89 -77.67 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.94 Total: 24.56 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.90 Total: -27.52 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.59 Total: -75.74 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.50 Total: -43.49 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.56 1.89 -77.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597706869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.007 kcal (2) G-P(sol) polarization free energy of solvation -79.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds