Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46833 * 269.99644 * 3 2 1 5 5 H 1.48501 * 109.47099 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47252 * 150.00018 * 3 2 1 7 7 C 1.37880 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99390 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00135 * 179.72373 * 7 2 1 10 10 H 1.09003 * 109.49714 * 60.28058 * 9 7 2 11 11 C 1.53044 * 109.49569 * 180.34228 * 9 7 2 12 12 C 1.53037 * 109.53565 * 181.31993 * 11 9 7 13 13 C 1.53192 * 109.31178 * 298.63529 * 12 11 9 14 14 N 1.46921 * 108.77829 * 54.63659 * 13 12 11 15 15 C 1.34777 * 120.63254 * 126.38820 * 14 13 12 16 16 O 1.21552 * 119.99998 * 176.20377 * 15 14 13 17 17 C 1.47853 * 119.99824 * 356.20517 * 15 14 13 18 18 C 1.39575 * 120.52891 * 230.05191 * 17 15 14 19 19 N 1.31652 * 120.68938 * 179.69988 * 18 17 15 20 20 C 1.31917 * 121.93551 * 0.59000 * 19 18 17 21 21 C 1.38805 * 121.00468 * 359.69636 * 20 19 18 22 22 O 1.35926 * 120.40080 * 180.02562 * 21 20 19 23 23 C 1.38877 * 119.19026 * 0.02562 * 21 20 19 24 24 C 1.46931 * 118.76439 * 306.41397 * 14 13 12 25 25 H 0.97001 * 120.00215 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46116 * 301.33749 * 11 9 7 27 27 H 1.08996 * 109.45778 * 61.31262 * 11 9 7 28 28 H 1.08996 * 109.50279 * 58.58615 * 12 11 9 29 29 H 1.08999 * 109.49598 * 178.68366 * 12 11 9 30 30 H 1.09002 * 109.58672 * 174.42338 * 13 12 11 31 31 H 1.09001 * 109.58606 * 294.84337 * 13 12 11 32 32 H 1.08000 * 119.65383 * 359.97438 * 18 17 15 33 33 H 1.08005 * 119.49040 * 179.72239 * 20 19 18 34 34 H 0.96699 * 114.00501 * 269.97501 * 22 21 20 35 35 H 1.08002 * 120.87840 * 179.97438 * 23 21 20 36 36 H 1.08999 * 109.55917 * 293.78493 * 24 14 13 37 37 H 1.08997 * 109.61800 * 173.35710 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8790 -0.6820 0.8836 11 6 4.0223 -2.6367 -0.0124 12 6 5.5524 -2.6379 0.0144 13 6 6.0817 -1.9319 -1.2378 14 7 5.4807 -0.5934 -1.3157 15 6 6.2567 0.5018 -1.4375 16 8 5.7460 1.5968 -1.5703 17 6 7.7292 0.3712 -1.4095 18 6 8.4968 1.1797 -0.5697 19 7 9.8077 1.0621 -0.5380 20 6 10.4490 0.1942 -1.2968 21 6 9.7607 -0.6431 -2.1639 22 8 10.4339 -1.5332 -2.9398 23 6 8.3760 -0.5603 -2.2289 24 6 4.0176 -0.4709 -1.2578 25 1 -0.4850 0.8400 -0.0004 26 1 3.6433 -3.1602 0.8654 27 1 3.6747 -3.1408 -0.9141 28 1 5.9012 -2.1122 0.9033 29 1 5.9151 -3.6657 0.0333 30 1 7.1662 -1.8423 -1.1760 31 1 5.8103 -2.5064 -2.1235 32 1 8.0100 1.9062 0.0639 33 1 11.5260 0.1341 -1.2421 34 1 10.6947 -1.1841 -3.8031 35 1 7.8132 -1.1983 -2.8942 36 1 3.5779 -0.9258 -2.1454 37 1 3.7403 0.5821 -1.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -33.563382 kcal Electronic energy + Delta-G solvation = -21670.571159 eV Core-core repulsion = 18413.382968 eV Total energy + Delta-G solvation = -3257.188192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03762 -39.48484 -37.59955 -36.97943 -33.85814 -32.56907 -31.88200 -30.58318 -30.41925 -25.86548 -25.32119 -23.99353 -23.42488 -22.09727 -20.42160 -19.16610 -18.19568 -17.35520 -17.26435 -16.89219 -16.71269 -15.75879 -15.29275 -14.74045 -14.20117 -14.11701 -13.86506 -13.63865 -13.50576 -13.19458 -12.95121 -12.82256 -12.51422 -12.24675 -11.75049 -11.43484 -11.14452 -10.70024 -10.51331 -10.29665 -10.18929 -9.90381 -9.81623 -9.58123 -9.27084 -9.18382 -9.13531 -8.65055 -8.20879 -6.14662 -4.16596 0.49533 0.77066 2.73881 3.14739 3.31918 3.34069 3.43038 3.51371 3.76495 4.19537 4.37841 4.43701 4.44358 4.56539 5.01774 5.07034 5.16506 5.18517 5.25744 5.43816 5.61895 5.69705 5.71167 5.93072 6.02229 6.07133 6.13852 6.32600 6.43640 6.56084 6.66627 6.73615 7.07495 7.10754 7.36359 7.55452 7.65588 7.67936 8.28876 8.44790 8.88474 9.46573 10.97329 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.005551 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.433401 B = 5042.954626 C = 5690.496031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.078 0.922 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.099 3.901 14 N -0.596 5.596 15 C 0.551 3.449 16 O -0.533 6.533 17 C -0.149 4.149 18 C 0.139 3.861 19 N -0.466 5.466 20 C 0.091 3.909 21 C 0.050 3.950 22 O -0.489 6.489 23 C -0.075 4.075 24 C 0.102 3.898 25 H 0.266 0.734 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.393 0.607 35 H 0.149 0.851 36 H 0.071 0.929 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -3.521 -5.321 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.096 0.904 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.024 4.024 14 N -0.327 5.327 15 C 0.337 3.663 16 O -0.411 6.411 17 C -0.154 4.154 18 C -0.019 4.019 19 N -0.175 5.175 20 C -0.067 4.067 21 C 0.004 3.996 22 O -0.298 6.298 23 C -0.101 4.101 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.270 -2.698 -4.370 20.910 hybrid contribution -0.046 0.588 -1.085 1.235 sum 20.223 -2.111 -5.455 21.052 Atomic orbital electron populations 1.69881 1.06266 1.27211 1.49810 1.25039 0.94752 0.99061 0.94044 0.87017 0.79715 0.83564 0.79003 1.19834 1.22109 1.18914 1.20942 0.88084 0.94676 1.51819 0.90373 1.19498 0.96967 0.92235 0.92799 0.95072 1.21450 0.91882 0.98793 1.01705 1.21990 0.98649 0.99616 0.97227 1.22017 0.97774 0.83256 0.99335 1.48414 1.08542 1.05661 1.70112 1.18123 0.85542 0.84787 0.77826 1.90816 1.74462 1.25951 1.49822 1.21086 0.95577 0.98625 1.00114 1.22948 0.88678 0.95486 0.94769 1.67792 1.09812 1.19034 1.20888 1.23329 1.01134 0.90085 0.92171 1.19335 0.90316 0.93056 0.96916 1.84866 1.75299 1.38090 1.31517 1.22150 0.94239 0.95692 0.98040 1.22726 0.74926 1.02727 1.01474 0.92433 0.92032 0.92402 0.91950 0.91451 0.90256 0.91086 0.81488 0.81865 0.75037 0.83381 0.91121 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 3 Si 0.88 22.89 24.32 -169.99 -4.13 18.76 16 4 H -0.27 -7.16 6.91 56.52 0.39 -6.77 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.26 -6.84 6.54 56.52 0.37 -6.48 16 7 C -0.52 -14.11 9.15 -34.44 -0.32 -14.43 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.10 1.84 -91.65 -0.17 -0.06 16 10 H 0.03 0.76 7.21 -51.93 -0.37 0.38 16 11 C -0.10 -1.84 5.11 -26.69 -0.14 -1.98 16 12 C -0.14 -1.99 6.08 -26.61 -0.16 -2.15 16 13 C 0.10 1.38 5.41 -3.71 -0.02 1.36 16 14 N -0.60 -10.79 2.97 -173.88 -0.52 -11.30 16 15 C 0.55 10.10 7.27 -12.33 -0.09 10.02 16 16 O -0.53 -11.90 16.47 5.32 0.09 -11.81 16 17 C -0.15 -2.11 5.02 -104.84 -0.53 -2.63 16 18 C 0.14 1.89 10.90 -17.13 -0.19 1.70 16 19 N -0.47 -5.81 10.34 -12.79 -0.13 -5.95 16 20 C 0.09 0.91 11.13 -17.31 -0.19 0.71 16 21 C 0.05 0.49 6.73 -39.14 -0.26 0.22 16 22 O -0.49 -3.68 13.52 -19.51 -0.26 -3.94 16 23 C -0.07 -0.84 7.45 -38.72 -0.29 -1.12 16 24 C 0.10 2.22 5.10 -3.71 -0.02 2.21 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.96 4.53 -51.93 -0.24 0.72 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.39 1.06 9.06 45.56 0.41 1.48 16 35 H 0.15 1.46 7.11 -52.49 -0.37 1.09 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.98 2.33 -51.93 -0.12 1.86 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -33.93 300.26 -5.80 -39.73 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.67 Total: 0.48 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.46 Total: -4.14 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.12 Total: -43.60 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.18 Total: -15.75 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.13 Total: 18.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.93 -5.80 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.166 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds