Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46833 * 269.99644 * 3 2 1 5 5 H 1.48501 * 109.47099 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47252 * 150.00018 * 3 2 1 7 7 C 1.37880 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99390 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00135 * 179.72373 * 7 2 1 10 10 H 1.09003 * 109.49714 * 60.28058 * 9 7 2 11 11 C 1.53044 * 109.49569 * 180.34228 * 9 7 2 12 12 C 1.53037 * 109.53565 * 181.31993 * 11 9 7 13 13 C 1.53192 * 109.31178 * 298.63529 * 12 11 9 14 14 N 1.46921 * 108.77829 * 54.63659 * 13 12 11 15 15 C 1.34777 * 120.63254 * 126.38820 * 14 13 12 16 16 O 1.21552 * 119.99998 * 176.20377 * 15 14 13 17 17 C 1.47853 * 119.99824 * 356.20517 * 15 14 13 18 18 C 1.39575 * 120.52891 * 230.05191 * 17 15 14 19 19 N 1.31652 * 120.68938 * 179.69988 * 18 17 15 20 20 C 1.31917 * 121.93551 * 0.59000 * 19 18 17 21 21 C 1.38805 * 121.00468 * 359.69636 * 20 19 18 22 22 O 1.35926 * 120.40080 * 180.02562 * 21 20 19 23 23 C 1.38877 * 119.19026 * 0.02562 * 21 20 19 24 24 C 1.46931 * 118.76439 * 306.41397 * 14 13 12 25 25 H 0.97001 * 120.00215 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46116 * 301.33749 * 11 9 7 27 27 H 1.08996 * 109.45778 * 61.31262 * 11 9 7 28 28 H 1.08996 * 109.50279 * 58.58615 * 12 11 9 29 29 H 1.08999 * 109.49598 * 178.68366 * 12 11 9 30 30 H 1.09002 * 109.58672 * 174.42338 * 13 12 11 31 31 H 1.09001 * 109.58606 * 294.84337 * 13 12 11 32 32 H 1.08000 * 119.65383 * 359.97438 * 18 17 15 33 33 H 1.08005 * 119.49040 * 179.72239 * 20 19 18 34 34 H 0.96699 * 114.00501 * 269.97501 * 22 21 20 35 35 H 1.08002 * 120.87840 * 179.97438 * 23 21 20 36 36 H 1.08999 * 109.55917 * 293.78493 * 24 14 13 37 37 H 1.08997 * 109.61800 * 173.35710 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8790 -0.6820 0.8836 11 6 4.0223 -2.6367 -0.0124 12 6 5.5524 -2.6379 0.0144 13 6 6.0817 -1.9319 -1.2378 14 7 5.4807 -0.5934 -1.3157 15 6 6.2567 0.5018 -1.4375 16 8 5.7460 1.5968 -1.5703 17 6 7.7292 0.3712 -1.4095 18 6 8.4968 1.1797 -0.5697 19 7 9.8077 1.0621 -0.5380 20 6 10.4490 0.1942 -1.2968 21 6 9.7607 -0.6431 -2.1639 22 8 10.4339 -1.5332 -2.9398 23 6 8.3760 -0.5603 -2.2289 24 6 4.0176 -0.4709 -1.2578 25 1 -0.4850 0.8400 -0.0004 26 1 3.6433 -3.1602 0.8654 27 1 3.6747 -3.1408 -0.9141 28 1 5.9012 -2.1122 0.9033 29 1 5.9151 -3.6657 0.0333 30 1 7.1662 -1.8423 -1.1760 31 1 5.8103 -2.5064 -2.1235 32 1 8.0100 1.9062 0.0639 33 1 11.5260 0.1341 -1.2421 34 1 10.6947 -1.1841 -3.8031 35 1 7.8132 -1.1983 -2.8942 36 1 3.5779 -0.9258 -2.1454 37 1 3.7403 0.5821 -1.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = -60.321242 kcal Electronic energy + Delta-G solvation = -21671.731467 eV Core-core repulsion = 18413.382968 eV Total energy + Delta-G solvation = -3258.348499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08586 -40.69755 -38.67956 -38.11348 -35.53602 -34.12656 -33.21363 -32.14605 -31.33509 -27.30709 -27.00497 -25.01350 -24.49615 -23.59104 -21.78614 -20.53136 -19.24776 -18.87593 -18.43893 -18.10363 -17.87527 -17.12630 -16.54752 -16.05654 -15.87156 -15.52723 -15.21486 -14.91180 -14.74373 -14.47232 -14.29884 -14.07750 -13.87598 -13.71750 -13.22343 -12.96662 -12.44510 -12.37118 -12.18081 -11.92244 -11.65104 -11.56696 -11.22825 -11.10920 -10.85651 -10.77505 -10.45533 -10.07458 -9.70657 -8.41109 -6.43090 -0.41877 -0.06777 1.20964 1.27719 1.37047 1.42026 1.85550 2.18773 2.45248 2.93918 2.95879 3.27992 3.41742 3.65047 3.70674 3.89932 4.03816 4.06782 4.24513 4.34078 4.37411 4.45384 4.55872 4.64943 4.79072 4.80580 4.83796 4.92114 5.05362 5.16848 5.29711 5.34053 5.48910 5.58425 5.64804 6.23271 6.27805 6.61956 6.65811 6.78007 6.91576 7.22662 8.74966 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.005551 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.433401 B = 5042.954626 C = 5690.496031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.004 3.996 10 H 0.014 0.986 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.096 3.904 14 N -0.598 5.598 15 C 0.549 3.451 16 O -0.585 6.585 17 C -0.162 4.162 18 C 0.126 3.874 19 N -0.479 5.479 20 C 0.097 3.903 21 C 0.074 3.926 22 O -0.487 6.487 23 C -0.071 4.071 24 C 0.107 3.893 25 H 0.268 0.732 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.197 0.803 34 H 0.419 0.581 35 H 0.165 0.835 36 H 0.072 0.928 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.176 -5.306 -6.337 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.071 0.929 9 C -0.016 4.016 10 H 0.032 0.968 11 C -0.135 4.135 12 C -0.167 4.167 13 C -0.025 4.025 14 N -0.328 5.328 15 C 0.337 3.663 16 O -0.466 6.466 17 C -0.168 4.168 18 C -0.031 4.031 19 N -0.189 5.189 20 C -0.061 4.061 21 C 0.027 3.973 22 O -0.300 6.300 23 C -0.097 4.097 24 C -0.014 4.014 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.173 0.827 33 H 0.214 0.786 34 H 0.279 0.721 35 H 0.183 0.817 36 H 0.090 0.910 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 24.146 -4.515 -5.399 25.151 hybrid contribution -1.111 1.020 -0.822 1.717 sum 23.035 -3.496 -6.221 24.115 Atomic orbital electron populations 1.69974 1.07491 1.27906 1.52234 1.25596 0.95151 1.01547 0.94502 0.86142 0.78376 0.80948 0.78328 1.20663 1.21952 1.19274 1.21295 0.90729 0.93280 1.49658 0.92902 1.19434 0.94030 0.95574 0.92562 0.96812 1.21382 0.94995 0.95228 1.01905 1.21953 0.95286 1.02120 0.97306 1.22363 0.99065 0.81016 1.00083 1.48403 1.06892 1.07643 1.69870 1.18745 0.87328 0.83832 0.76351 1.90777 1.75860 1.27909 1.52050 1.20661 0.92627 1.01003 1.02478 1.22810 0.89352 0.95662 0.95239 1.67833 1.08974 1.20202 1.21875 1.23902 1.02581 0.88791 0.90836 1.19190 0.89573 0.92149 0.96431 1.84822 1.74700 1.37569 1.32902 1.22284 0.95155 0.94992 0.97306 1.22223 0.77970 1.00502 1.00753 0.92302 0.92403 0.91764 0.92673 0.87340 0.87617 0.88575 0.82688 0.78621 0.72059 0.81723 0.90965 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.03 1.83 5.45 84.66 0.46 2.29 16 3 Si 0.93 49.53 24.32 68.60 1.67 51.20 16 4 H -0.28 -15.06 6.91 99.48 0.69 -14.37 16 5 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.27 -14.15 6.54 99.48 0.65 -13.50 16 7 C -0.51 -28.63 9.15 25.60 0.23 -28.39 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 9 C 0.00 0.17 1.84 -11.46 -0.02 0.14 16 10 H 0.01 0.68 7.21 -2.39 -0.02 0.66 16 11 C -0.10 -3.42 5.11 30.62 0.16 -3.26 16 12 C -0.13 -3.31 6.08 30.67 0.19 -3.13 16 13 C 0.10 2.32 5.41 86.36 0.47 2.78 16 14 N -0.60 -20.92 2.97 -822.31 -2.44 -23.36 16 15 C 0.55 19.92 7.27 86.79 0.63 20.55 16 16 O -0.58 -26.81 16.47 -3.88 -0.06 -26.88 16 17 C -0.16 -4.32 5.02 -20.01 -0.10 -4.43 16 18 C 0.13 3.32 10.90 85.04 0.93 4.25 16 19 N -0.48 -10.84 10.34 -194.38 -2.01 -12.85 16 20 C 0.10 1.53 11.13 84.82 0.94 2.48 16 21 C 0.07 1.07 6.73 22.56 0.15 1.22 16 22 O -0.49 -4.57 13.52 -92.72 -1.25 -5.82 16 23 C -0.07 -1.32 7.45 22.83 0.17 -1.15 16 24 C 0.11 4.72 5.10 86.36 0.44 5.16 16 25 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 26 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 2.07 4.53 -2.39 -0.01 2.06 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.42 -0.15 9.06 -74.06 -0.67 -0.82 16 35 H 0.17 2.49 7.11 -2.91 -0.02 2.46 16 36 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.05 2.52 2.33 -2.39 -0.01 2.51 16 Total: -1.00 -77.34 300.26 1.20 -76.14 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 0.36 Total: 1.30 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.65 Total: -1.48 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.15 Total: -94.47 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.32 Total: -32.69 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.67 Total: 51.20 kcal Total: -77.34 1.20 -76.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.815 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds