Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 119.99765 * 2 1 4 4 H 1.48505 * 109.47394 * 240.00294 * 3 2 1 5 5 H 1.48498 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47163 * 120.00539 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47100 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99709 * 179.97438 * 11 10 9 13 13 O 1.21596 * 120.00155 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99968 * 179.97438 * 12 11 10 15 15 C 1.40172 * 120.00111 * 185.63282 * 14 12 11 16 16 C 1.38520 * 119.94350 * 24.83011 * 15 14 12 17 17 C 1.38195 * 120.27021 * 180.02562 * 16 15 14 18 18 C 1.38374 * 119.82912 * 0.18455 * 17 16 15 19 19 C 1.37854 * 120.10417 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.82455 * 359.64347 * 19 18 17 21 21 O 1.36210 * 111.25657 * 181.03169 * 20 19 18 22 22 C 1.43787 * 109.17493 * 340.66505 * 21 20 19 23 23 C 1.51653 * 132.11498 * 179.13264 * 19 18 17 24 24 H 0.96996 * 120.00284 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47193 * 60.00509 * 9 7 2 26 26 H 1.08991 * 109.47433 * 300.00232 * 9 7 2 27 27 H 1.08994 * 109.47015 * 59.99859 * 10 9 7 28 28 H 1.09000 * 109.46899 * 299.99994 * 10 9 7 29 29 H 0.97000 * 120.00006 * 359.97438 * 11 10 9 30 30 H 0.96997 * 120.00196 * 5.63225 * 14 12 11 31 31 H 1.07999 * 119.86500 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.08982 * 180.20681 * 17 16 15 33 33 H 1.07995 * 119.94844 * 180.02562 * 18 17 16 34 34 H 1.08995 * 110.75667 * 269.54443 * 22 21 20 35 35 H 1.08999 * 110.91552 * 146.24805 * 22 21 20 36 36 H 1.09000 * 110.93639 * 313.76456 * 23 19 18 37 37 H 1.09004 * 110.93823 * 77.39984 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0018 13 8 3.4027 -6.0979 -0.0023 14 7 1.5129 -7.2652 -0.0018 15 6 2.2087 -8.4762 0.1167 16 6 3.4505 -8.5030 0.7300 17 6 4.1426 -9.6931 0.8500 18 6 3.5940 -10.8616 0.3518 19 6 2.3600 -10.8393 -0.2623 20 6 1.6481 -9.6550 -0.3842 21 8 0.4502 -9.8600 -0.9993 22 6 0.4945 -11.1055 -1.7163 23 6 1.5254 -11.9285 -0.9079 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.5428 -4.9308 -0.0011 30 1 0.5464 -7.2672 -0.0839 31 1 3.8795 -7.5901 1.1159 32 1 5.1091 -9.7112 1.3316 33 1 4.1331 -11.7928 0.4448 34 1 0.8398 -10.9508 -2.7384 35 1 -0.4802 -11.5935 -1.7092 36 1 2.1344 -12.5461 -1.5680 37 1 1.0308 -12.5395 -0.1528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599843805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = -59.283529 kcal Electronic energy + Delta-G solvation = -20313.072405 eV Core-core repulsion = 17054.768904 eV Total energy + Delta-G solvation = -3258.303501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.28235 -41.15897 -38.42916 -36.73871 -35.90403 -34.86398 -32.99735 -31.61627 -30.39068 -29.58426 -26.74443 -24.53373 -23.51294 -23.29839 -22.64885 -21.57781 -19.73823 -18.50150 -18.44939 -18.16203 -17.34910 -16.80165 -16.65025 -16.49804 -16.16215 -15.63168 -15.28667 -15.18103 -14.52853 -14.30375 -14.03619 -13.91936 -13.56347 -13.23746 -12.93769 -12.79643 -12.67058 -12.53743 -12.31934 -12.28060 -11.89859 -11.65927 -11.54357 -11.43137 -11.02721 -10.60513 -10.11763 -9.35635 -8.78624 -8.24303 -6.34922 0.28736 0.32830 1.41643 1.44643 1.50959 1.56251 1.97995 2.26878 2.40993 2.80432 3.10619 3.16542 3.51734 3.70943 4.07087 4.19397 4.23019 4.39706 4.42901 4.49027 4.50237 4.63307 4.79972 4.84877 4.92969 4.96073 5.09758 5.22094 5.30795 5.46522 5.51229 5.57487 5.57659 5.70137 5.77200 5.91089 6.15399 6.22294 6.78005 6.91374 7.34308 7.39649 8.87550 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.002987 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.748367 B = 9370.165722 C = 9943.966189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.726 5.726 12 C 0.699 3.301 13 O -0.612 6.612 14 N -0.674 5.674 15 C 0.136 3.864 16 C -0.127 4.127 17 C -0.124 4.124 18 C -0.091 4.091 19 C -0.158 4.158 20 C 0.052 3.948 21 O -0.326 6.326 22 C 0.043 3.957 23 C -0.100 4.100 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.408 0.592 30 H 0.419 0.581 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -26.764 -1.094 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.380 5.380 12 C 0.400 3.600 13 O -0.493 6.493 14 N -0.321 5.321 15 C 0.040 3.960 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.110 4.110 19 C -0.159 4.159 20 C 0.005 3.995 21 O -0.241 6.241 22 C -0.031 4.031 23 C -0.137 4.137 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.244 0.756 30 H 0.256 0.744 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.110 -26.409 -1.104 26.517 hybrid contribution -0.702 1.262 -0.072 1.446 sum 1.408 -25.147 -1.176 25.214 Atomic orbital electron populations 1.70055 1.07585 1.28100 1.50948 1.25882 0.95796 1.03145 0.94372 0.85485 0.78285 0.78032 0.79175 1.19305 1.20621 1.19264 1.21438 0.93686 0.91807 1.51666 0.92091 1.19131 0.94241 0.91633 0.96395 1.21165 0.94674 0.80505 1.00068 1.45275 1.10584 1.04288 1.77866 1.16060 0.85273 0.80823 0.77890 1.90831 1.12920 1.86704 1.58835 1.42453 1.10831 1.02779 1.76054 1.17142 0.94250 0.81971 1.02623 1.21272 0.93735 1.00451 0.99280 1.21254 1.01001 0.91092 1.00944 1.20642 0.93685 0.99343 0.97312 1.21058 0.96970 0.94062 1.03840 1.19257 0.88042 0.93535 0.98679 1.86788 1.29468 1.43361 1.64448 1.24139 1.02598 0.80824 0.95502 1.21879 0.95848 0.96151 0.99809 0.92524 0.97340 0.97262 0.93201 0.93443 0.75649 0.74438 0.85025 0.83110 0.82402 0.90150 0.85013 0.86691 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 2 C 0.01 0.38 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.79 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.16 7.01 5.61 86.38 0.48 7.49 16 11 N -0.73 -26.55 5.56 -478.54 -2.66 -29.21 16 12 C 0.70 25.87 8.36 179.06 1.50 27.36 16 13 O -0.61 -26.61 13.50 -4.02 -0.05 -26.66 16 14 N -0.67 -20.46 5.38 -316.52 -1.70 -22.16 16 15 C 0.14 4.06 6.46 38.25 0.25 4.30 16 16 C -0.13 -3.79 8.69 22.33 0.19 -3.60 16 17 C -0.12 -2.76 10.06 22.29 0.22 -2.54 16 18 C -0.09 -1.64 10.03 22.21 0.22 -1.42 16 19 C -0.16 -3.07 6.27 -19.54 -0.12 -3.19 16 20 C 0.05 1.32 6.92 22.76 0.16 1.48 16 21 O -0.33 -7.37 11.11 -95.95 -1.07 -8.43 16 22 C 0.04 0.56 8.01 72.56 0.58 1.14 16 23 C -0.10 -1.11 7.12 30.73 0.22 -0.89 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.41 12.82 8.49 -92.71 -0.79 12.03 16 30 H 0.42 10.55 8.80 -92.71 -0.82 9.73 16 31 H 0.13 4.62 5.76 -2.91 -0.02 4.60 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -71.37 317.25 0.88 -70.49 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.50 Total: 22.83 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 4.55 Total: 1.78 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -4.08 Total: -105.86 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.12 Total: -35.10 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.37 0.88 -70.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599843805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.207 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds