Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47268 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.47252 * 29.99888 * 3 2 1 6 6 H 1.48504 * 109.47368 * 149.99799 * 3 2 1 7 7 C 1.38949 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99331 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00066 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99495 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00356 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99688 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.46560 * 110.99768 * 177.34205 * 13 12 10 15 15 C 1.52265 * 111.01549 * 321.85959 * 14 13 12 16 16 C 1.51615 * 112.86815 * 292.94675 * 15 14 13 17 17 O 1.43231 * 110.55068 * 64.15435 * 16 15 14 18 18 C 1.36227 * 115.43486 * 275.77952 * 17 16 15 19 19 C 1.38584 * 119.96423 * 250.02975 * 18 17 16 20 20 C 1.38345 * 119.75569 * 178.90980 * 19 18 17 21 21 C 1.38251 * 120.29456 * 359.72813 * 20 19 18 22 22 C 1.38336 * 120.16539 * 0.32434 * 21 20 19 23 23 C 1.38623 * 120.12058 * 69.17879 * 18 17 16 24 24 H 0.97006 * 119.99323 * 0.02562 * 1 2 3 25 25 H 0.96990 * 119.99969 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.46668 * 60.00324 * 12 10 9 27 27 H 1.08995 * 109.47160 * 300.00345 * 12 10 9 28 28 H 1.09007 * 109.16865 * 201.46124 * 14 13 12 29 29 H 1.08997 * 109.12806 * 82.22720 * 14 13 12 30 30 H 1.09002 * 108.80334 * 172.07804 * 15 14 13 31 31 H 1.08996 * 108.80048 * 53.82403 * 15 14 13 32 32 H 1.08998 * 109.26491 * 303.87767 * 16 15 14 33 33 H 1.09005 * 109.26349 * 184.42558 * 16 15 14 34 34 H 1.07998 * 120.12592 * 358.64125 * 19 18 17 35 35 H 1.07998 * 119.84696 * 179.72352 * 20 19 18 36 36 H 1.08005 * 119.92050 * 180.32312 * 21 20 19 37 37 H 1.07997 * 120.18183 * 180.11928 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 -0.0001 13 7 6.0504 -3.7556 0.0007 14 6 7.5140 -3.7953 -0.0638 15 6 8.0496 -2.7070 -0.9843 16 6 7.6819 -2.9313 -2.4380 17 8 6.2622 -2.8617 -2.6140 18 6 5.5837 -4.0148 -2.3577 19 6 5.0045 -4.7231 -3.3986 20 6 4.3358 -5.9054 -3.1362 21 6 4.2483 -6.3848 -1.8424 22 6 4.8239 -5.6809 -0.7999 23 6 5.4863 -4.4908 -1.0594 24 1 -0.4849 0.8402 -0.0004 25 1 3.8648 -0.3634 -0.0004 26 1 5.9247 -1.8556 0.8890 27 1 5.9234 -1.8580 -0.8910 28 1 7.8295 -4.7689 -0.4391 29 1 7.9197 -3.6490 0.9372 30 1 9.1358 -2.6765 -0.8974 31 1 7.6466 -1.7463 -0.6640 32 1 8.0353 -3.9137 -2.7509 33 1 8.1581 -2.1664 -3.0515 34 1 5.0712 -4.3512 -4.4104 35 1 3.8801 -6.4562 -3.9457 36 1 3.7293 -7.3112 -1.6451 37 1 4.7573 -6.0561 0.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610998967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -12.374999 kcal Electronic energy + Delta-G solvation = -22302.550184 eV Core-core repulsion = 19046.280790 eV Total energy + Delta-G solvation = -3256.269394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01133 -38.11472 -37.26559 -36.21791 -33.84897 -32.25707 -31.58528 -30.18705 -28.96158 -27.26505 -25.50434 -24.13368 -22.42501 -21.26661 -20.60956 -19.31800 -18.53050 -17.46171 -16.63096 -16.28113 -15.65600 -15.27735 -14.86366 -14.65437 -14.46090 -14.09582 -13.63006 -13.51324 -13.23656 -13.07104 -12.72248 -12.42768 -12.23599 -11.91308 -11.68710 -11.56101 -11.32328 -11.10855 -10.92572 -10.67820 -10.52321 -10.05356 -9.89862 -9.47930 -8.68085 -8.37528 -8.21202 -8.09115 -7.82000 -6.22915 -3.73080 1.53274 1.74360 3.08450 3.13073 3.19994 3.60143 3.88076 3.95756 4.10805 4.17721 4.61493 4.75487 4.85397 5.06765 5.20591 5.25052 5.30551 5.31700 5.42768 5.56187 5.66001 5.73325 5.76736 5.79519 5.89577 5.92656 6.00548 6.07886 6.27821 6.55465 6.78483 6.80542 7.00313 7.05077 7.37461 7.66768 7.81419 8.23366 8.69383 9.04226 9.51988 9.93702 10.90588 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.006596 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.381675 B = 4244.070026 C = 4848.041294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.456 3.544 11 O -0.554 6.554 12 C 0.027 3.973 13 N -0.477 5.477 14 C 0.055 3.945 15 C -0.196 4.196 16 C 0.060 3.940 17 O -0.325 6.325 18 C 0.057 3.943 19 C -0.130 4.130 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.049 4.049 23 C 0.095 3.905 24 H 0.272 0.728 25 H 0.369 0.631 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.823 -6.680 -4.318 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.427 4.427 8 H 0.136 0.864 9 N -0.232 5.232 10 C 0.242 3.758 11 O -0.435 6.435 12 C -0.102 4.102 13 N -0.197 5.197 14 C -0.072 4.072 15 C -0.235 4.235 16 C -0.015 4.015 17 O -0.241 6.241 18 C 0.012 3.988 19 C -0.149 4.149 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.068 4.068 23 C 0.001 3.999 24 H 0.082 0.918 25 H 0.201 0.799 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.993 -7.306 -3.896 18.903 hybrid contribution 0.812 1.889 -0.589 2.138 sum 17.805 -5.417 -4.485 19.144 Atomic orbital electron populations 1.69627 1.05584 1.27287 1.50064 1.25007 0.95467 0.97854 0.97905 0.86691 0.79783 0.84209 0.78839 1.19705 1.20257 1.19544 1.19402 0.79232 0.96526 1.47548 0.86381 1.42137 1.07438 1.06020 1.67608 1.19569 0.88047 0.84670 0.83537 1.90567 1.69181 1.30573 1.53196 1.22277 0.95814 0.89297 1.02860 1.60017 1.05185 1.12379 1.42132 1.22056 0.86837 0.98471 0.99832 1.22513 1.02309 1.02263 0.96371 1.22574 0.80545 1.02283 0.96074 1.86411 1.18534 1.30888 1.88302 1.19235 0.98709 0.88003 0.92844 1.21027 1.00988 0.94647 0.98250 1.20910 0.99457 0.95967 0.96996 1.21065 1.00129 1.00412 0.92651 1.20761 0.93961 0.93101 0.99009 1.18965 0.98659 0.94650 0.87609 0.91769 0.79868 0.89246 0.90091 0.90951 0.89695 0.90062 0.90014 0.92577 0.88520 0.85994 0.86109 0.86001 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.96 55.50 0.77 -25.86 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 20.20 27.74 -169.99 -4.71 15.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.68 6.52 56.52 0.37 -5.32 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.92 16 8 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 9 N -0.59 -14.94 5.09 -10.96 -0.06 -14.99 16 10 C 0.46 10.99 7.42 -10.98 -0.08 10.91 16 11 O -0.55 -15.13 13.32 5.55 0.07 -15.06 16 12 C 0.03 0.50 4.19 -4.97 -0.02 0.48 16 13 N -0.48 -8.07 4.74 -172.99 -0.82 -8.89 16 14 C 0.06 0.67 5.87 -4.38 -0.03 0.65 16 15 C -0.20 -2.05 5.27 -27.81 -0.15 -2.20 16 16 C 0.06 0.70 6.51 36.46 0.24 0.93 16 17 O -0.32 -5.33 8.17 -20.47 -0.17 -5.50 16 18 C 0.06 1.00 5.29 -39.31 -0.21 0.80 16 19 C -0.13 -2.11 10.00 -39.41 -0.39 -2.50 16 20 C -0.12 -1.72 10.03 -39.54 -0.40 -2.12 16 21 C -0.12 -1.92 10.04 -39.54 -0.40 -2.32 16 22 C -0.05 -0.86 8.80 -39.39 -0.35 -1.21 16 23 C 0.09 1.71 2.64 -83.44 -0.22 1.49 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.37 8.29 5.76 -40.82 -0.24 8.05 16 26 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.08 1.42 4.15 -51.93 -0.22 1.21 16 28 H 0.07 0.83 7.81 -51.93 -0.41 0.43 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.92 6.04 -51.93 -0.31 0.61 16 32 H 0.06 0.60 7.93 -51.93 -0.41 0.19 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -34.47 297.63 -7.19 -41.66 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.52 Total: 11.63 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.25 Total: -2.97 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.10 Total: -49.74 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.09 Total: -20.56 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.47 -7.19 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610998967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds