Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47268 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.47252 * 29.99888 * 3 2 1 6 6 H 1.48504 * 109.47368 * 149.99799 * 3 2 1 7 7 C 1.38949 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99331 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00066 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99495 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00356 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99688 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.46560 * 110.99768 * 177.34205 * 13 12 10 15 15 C 1.52265 * 111.01549 * 321.85959 * 14 13 12 16 16 C 1.51615 * 112.86815 * 292.94675 * 15 14 13 17 17 O 1.43231 * 110.55068 * 64.15435 * 16 15 14 18 18 C 1.36227 * 115.43486 * 275.77952 * 17 16 15 19 19 C 1.38584 * 119.96423 * 250.02975 * 18 17 16 20 20 C 1.38345 * 119.75569 * 178.90980 * 19 18 17 21 21 C 1.38251 * 120.29456 * 359.72813 * 20 19 18 22 22 C 1.38336 * 120.16539 * 0.32434 * 21 20 19 23 23 C 1.38623 * 120.12058 * 69.17879 * 18 17 16 24 24 H 0.97006 * 119.99323 * 0.02562 * 1 2 3 25 25 H 0.96990 * 119.99969 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.46668 * 60.00324 * 12 10 9 27 27 H 1.08995 * 109.47160 * 300.00345 * 12 10 9 28 28 H 1.09007 * 109.16865 * 201.46124 * 14 13 12 29 29 H 1.08997 * 109.12806 * 82.22720 * 14 13 12 30 30 H 1.09002 * 108.80334 * 172.07804 * 15 14 13 31 31 H 1.08996 * 108.80048 * 53.82403 * 15 14 13 32 32 H 1.08998 * 109.26491 * 303.87767 * 16 15 14 33 33 H 1.09005 * 109.26349 * 184.42558 * 16 15 14 34 34 H 1.07998 * 120.12592 * 358.64125 * 19 18 17 35 35 H 1.07998 * 119.84696 * 179.72352 * 20 19 18 36 36 H 1.08005 * 119.92050 * 180.32312 * 21 20 19 37 37 H 1.07997 * 120.18183 * 180.11928 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 -0.0001 13 7 6.0504 -3.7556 0.0007 14 6 7.5140 -3.7953 -0.0638 15 6 8.0496 -2.7070 -0.9843 16 6 7.6819 -2.9313 -2.4380 17 8 6.2622 -2.8617 -2.6140 18 6 5.5837 -4.0148 -2.3577 19 6 5.0045 -4.7231 -3.3986 20 6 4.3358 -5.9054 -3.1362 21 6 4.2483 -6.3848 -1.8424 22 6 4.8239 -5.6809 -0.7999 23 6 5.4863 -4.4908 -1.0594 24 1 -0.4849 0.8402 -0.0004 25 1 3.8648 -0.3634 -0.0004 26 1 5.9247 -1.8556 0.8890 27 1 5.9234 -1.8580 -0.8910 28 1 7.8295 -4.7689 -0.4391 29 1 7.9197 -3.6490 0.9372 30 1 9.1358 -2.6765 -0.8974 31 1 7.6466 -1.7463 -0.6640 32 1 8.0353 -3.9137 -2.7509 33 1 8.1581 -2.1664 -3.0515 34 1 5.0712 -4.3512 -4.4104 35 1 3.8801 -6.4562 -3.9457 36 1 3.7293 -7.3112 -1.6451 37 1 4.7573 -6.0561 0.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610998967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -38.212048 kcal Electronic energy + Delta-G solvation = -22303.670563 eV Core-core repulsion = 19046.280790 eV Total energy + Delta-G solvation = -3257.389773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22228 -39.93401 -38.40692 -37.50259 -35.90234 -33.73358 -33.28741 -31.42832 -30.35153 -28.55825 -26.81316 -25.86793 -23.63807 -22.39018 -21.93997 -21.10567 -20.33564 -18.85158 -18.00073 -17.59954 -17.15444 -16.54601 -16.42672 -15.95143 -15.81815 -15.65205 -15.15288 -14.76216 -14.66069 -14.45253 -14.25242 -13.96650 -13.75128 -13.31115 -13.03648 -12.91622 -12.61903 -12.43189 -12.41261 -12.04100 -11.98312 -11.64422 -11.49333 -11.07408 -10.44174 -10.22244 -9.66338 -9.43406 -9.19099 -8.40502 -5.99805 0.32295 0.48725 1.27850 1.33772 1.41979 1.99742 2.22382 2.48103 2.68183 2.89854 3.14912 3.18115 3.74130 3.92438 4.02944 4.14701 4.18258 4.28460 4.34106 4.43872 4.48814 4.54193 4.57549 4.64016 4.73526 4.81388 4.94568 5.05734 5.16681 5.35900 5.51640 5.54106 5.58596 5.82049 5.88228 5.98374 6.20729 6.59756 6.62444 6.90014 7.41155 7.98618 8.77424 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.006596 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.381675 B = 4244.070026 C = 4848.041294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.321 4.321 8 H 0.054 0.946 9 N -0.595 5.595 10 C 0.452 3.548 11 O -0.593 6.593 12 C 0.042 3.958 13 N -0.493 5.493 14 C 0.052 3.948 15 C -0.190 4.190 16 C 0.051 3.949 17 O -0.346 6.346 18 C 0.044 3.956 19 C -0.147 4.147 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.076 4.076 23 C 0.076 3.924 24 H 0.278 0.722 25 H 0.386 0.614 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.077 -5.011 -4.725 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.156 1.156 7 C -0.450 4.450 8 H 0.073 0.927 9 N -0.237 5.237 10 C 0.239 3.761 11 O -0.476 6.476 12 C -0.088 4.088 13 N -0.214 5.214 14 C -0.074 4.074 15 C -0.228 4.228 16 C -0.023 4.023 17 O -0.264 6.264 18 C -0.001 4.001 19 C -0.166 4.166 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.095 4.095 23 C -0.018 4.018 24 H 0.088 0.912 25 H 0.221 0.779 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 20.294 -5.656 -4.298 21.501 hybrid contribution -0.219 1.205 -0.486 1.318 sum 20.075 -4.451 -4.784 21.112 Atomic orbital electron populations 1.69807 1.08000 1.29068 1.50846 1.26055 0.96462 1.02522 0.96345 0.85412 0.79544 0.77082 0.79806 1.18459 1.19685 1.15643 1.18959 0.81340 0.94835 1.49875 0.92739 1.41984 1.05826 1.07366 1.68524 1.20771 0.90700 0.83615 0.81012 1.90550 1.70925 1.32055 1.54032 1.22188 0.90775 0.91049 1.04790 1.60039 1.07943 1.11170 1.42238 1.22228 0.83913 0.99654 1.01620 1.22470 1.04517 1.00920 0.94913 1.22924 0.78147 1.03699 0.97522 1.86349 1.21013 1.30539 1.88480 1.19431 0.99205 0.88459 0.92974 1.21378 1.01136 0.95198 0.98922 1.21295 0.98727 0.95789 0.97633 1.21401 0.99821 1.01206 0.92640 1.20952 0.95109 0.94083 0.99319 1.19142 0.99342 0.95023 0.88254 0.91243 0.77904 0.86311 0.88749 0.90524 0.87766 0.86308 0.90342 0.91920 0.85998 0.84540 0.83100 0.83729 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.96 21.66 0.30 -57.82 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 3 Si 0.96 40.71 27.74 68.60 1.90 42.61 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.23 -8.42 6.52 99.48 0.65 -7.77 16 7 C -0.32 -19.60 10.16 84.04 0.85 -18.74 16 8 H 0.05 3.94 7.39 -2.91 -0.02 3.92 16 9 N -0.59 -30.01 5.09 -306.98 -1.56 -31.57 16 10 C 0.45 21.90 7.42 87.66 0.65 22.55 16 11 O -0.59 -33.69 13.32 -3.06 -0.04 -33.73 16 12 C 0.04 1.45 4.19 85.56 0.36 1.81 16 13 N -0.49 -16.11 4.74 -701.21 -3.32 -19.43 16 14 C 0.05 1.12 5.87 86.12 0.51 1.63 16 15 C -0.19 -3.24 5.27 29.90 0.16 -3.08 16 16 C 0.05 1.02 6.51 71.53 0.47 1.49 16 17 O -0.35 -10.80 8.17 -96.15 -0.79 -11.58 16 18 C 0.04 1.54 5.29 22.44 0.12 1.66 16 19 C -0.15 -4.71 10.00 22.38 0.22 -4.49 16 20 C -0.12 -3.42 10.03 22.30 0.22 -3.20 16 21 C -0.13 -4.13 10.04 22.30 0.22 -3.90 16 22 C -0.08 -2.72 8.80 22.39 0.20 -2.52 16 23 C 0.08 2.74 2.64 37.89 0.10 2.84 16 24 H 0.28 15.78 8.31 -92.70 -0.77 15.00 16 25 H 0.39 16.50 5.76 -92.72 -0.53 15.97 16 26 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.10 3.08 4.15 -2.39 -0.01 3.07 16 28 H 0.08 1.60 7.81 -2.38 -0.02 1.58 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.43 6.04 -2.39 -0.01 1.42 16 32 H 0.06 1.17 7.93 -2.39 -0.02 1.15 16 33 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -80.32 297.63 1.54 -78.77 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: 0.50 Total: 37.15 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.55 Total: -4.40 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -4.58 Total: -108.82 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.83 Total: -45.31 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.90 Total: 42.61 kcal Total: -80.32 1.54 -78.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610998967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.560 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds