Wall clock time and date at job start Mon Mar 30 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47103 * 180.02562 * 19 18 16 21 21 C 1.50706 * 109.46825 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99455 * 179.97438 * 21 20 19 23 23 O 1.21276 * 120.00153 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 25 25 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 29 29 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 30 30 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 31 31 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 32 32 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 33 33 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 34 34 H 1.08992 * 109.47355 * 299.99774 * 20 19 18 35 35 H 1.09003 * 109.47571 * 60.00046 * 20 19 18 36 36 H 0.97000 * 120.00563 * 0.02562 * 22 21 20 37 37 H 0.97000 * 119.99739 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7700 -3.9356 -1.4474 21 6 9.1202 -3.9023 -0.7787 22 7 10.2417 -4.0005 -1.5197 23 8 9.1975 -3.7882 0.4262 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0691 -1.3040 1.8430 26 1 -0.9698 -3.3393 2.7431 27 1 -0.2416 -5.5537 1.9556 28 1 1.5304 -5.7534 0.2610 29 1 2.7709 -4.7177 -1.4995 30 1 2.8121 -2.9465 -1.6708 31 1 5.2988 -3.9312 -2.0021 32 1 6.7917 -2.8647 0.1451 33 1 6.7498 -4.6358 0.3162 34 1 7.6517 -4.8785 -1.9811 35 1 7.6934 -3.1072 -2.1518 36 1 10.1799 -4.0921 -2.4834 37 1 11.1108 -3.9787 -1.0894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777405979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:48 Heat of formation + Delta-G solvation = -76.997138 kcal Electronic energy + Delta-G solvation = -20630.714022 eV Core-core repulsion = 17371.642402 eV Total energy + Delta-G solvation = -3259.071621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85966 -39.07830 -37.48496 -34.80338 -33.96130 -33.79288 -31.89712 -30.59598 -29.15446 -26.90721 -24.94037 -23.80237 -20.88668 -20.78168 -20.61469 -19.47003 -17.75062 -17.54306 -17.06503 -16.21381 -16.05577 -15.37730 -14.93755 -14.74688 -14.13911 -14.08301 -13.81116 -13.57000 -13.08732 -13.00551 -12.25479 -11.99315 -11.94999 -11.67823 -11.64904 -11.17158 -11.02469 -10.79378 -10.41832 -10.34742 -10.28615 -10.01421 -9.59542 -9.32649 -9.16871 -8.90502 -8.70638 -7.49789 -7.44788 -7.06947 -4.36428 2.36827 2.78505 2.90359 3.10620 3.19234 3.33102 3.36718 3.42147 3.80778 4.06845 4.49131 4.64866 4.82751 4.83972 5.20335 5.43812 5.71661 5.85451 5.94185 6.03185 6.18747 6.23102 6.37608 6.41910 6.44980 6.73499 6.77217 6.97562 7.06045 7.27040 7.47933 7.73074 7.88422 7.91418 7.95045 7.96793 8.01719 8.26848 8.40761 8.84515 8.88865 8.98606 10.12529 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004819 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.876285 B = 5809.242309 C = 7086.902137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.253 4.253 13 C -0.069 4.069 14 C -0.185 4.185 15 C -0.069 4.069 16 C 0.513 3.487 17 O -0.516 6.516 18 N -0.748 5.748 19 C 0.134 3.866 20 C -0.154 4.154 21 C 0.520 3.480 22 N -0.859 5.859 23 O -0.535 6.535 24 H 0.299 0.701 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.953 -5.736 -10.066 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.105 4.105 12 C -0.272 4.272 13 C -0.087 4.087 14 C -0.187 4.187 15 C -0.109 4.109 16 C 0.300 3.700 17 O -0.390 6.390 18 N -0.403 5.403 19 C 0.010 3.990 20 C -0.194 4.194 21 C 0.304 3.696 22 N -0.423 5.423 23 O -0.410 6.410 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 13.577 -3.911 -8.294 16.384 hybrid contribution 0.644 -1.841 -0.853 2.129 sum 14.221 -5.752 -9.147 17.861 Atomic orbital electron populations 1.70451 1.08188 1.34249 1.29432 1.26917 0.95672 1.04133 0.91374 0.83715 0.75729 0.74160 0.77995 1.19903 1.20020 1.20294 1.20442 1.02688 0.94016 1.37368 0.90973 1.17393 0.90178 0.91816 0.89255 1.21141 1.03576 0.96976 1.01835 1.20603 0.98320 0.93253 0.98324 1.20260 1.04968 0.95790 1.06226 1.20357 0.96116 0.95800 0.96469 1.19014 1.02681 0.93552 1.03422 1.20243 0.89847 1.02428 0.98351 1.21216 0.85762 0.75091 0.87886 1.90706 1.87144 1.46426 1.14679 1.46107 1.05585 1.78190 1.10453 1.20899 0.80546 1.03693 0.93865 1.21829 0.92302 1.05046 1.00245 1.20494 0.86499 0.75171 0.87402 1.43882 1.08854 1.78016 1.11547 1.90814 1.87553 1.48137 1.14511 0.88743 0.87760 0.89399 0.89469 0.89608 0.90627 0.88638 0.77241 0.90903 0.91106 0.88152 0.88011 0.77066 0.76818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.42 12.32 55.55 0.68 -20.74 16 2 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 3 Si 1.06 22.30 30.00 -169.99 -5.10 17.20 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.52 -13.82 8.08 -37.74 -0.30 -14.13 16 8 H 0.07 1.89 6.73 -52.49 -0.35 1.54 16 9 C 0.12 3.14 5.30 -106.82 -0.57 2.58 16 10 C -0.22 -5.81 7.95 -38.87 -0.31 -6.12 16 11 C -0.09 -2.13 10.02 -39.66 -0.40 -2.52 16 12 C -0.25 -5.96 10.05 -39.29 -0.39 -6.35 16 13 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 14 C -0.18 -4.50 4.43 -103.91 -0.46 -4.96 16 15 C -0.07 -1.35 5.18 -29.03 -0.15 -1.50 16 16 C 0.51 10.22 7.46 -10.99 -0.08 10.14 16 17 O -0.52 -13.02 16.03 5.56 0.09 -12.93 16 18 N -0.75 -10.68 5.56 -60.30 -0.33 -11.01 16 19 C 0.13 1.86 4.96 -4.04 -0.02 1.84 16 20 C -0.15 -1.28 5.81 -27.88 -0.16 -1.44 16 21 C 0.52 5.28 8.10 -10.98 -0.09 5.19 16 22 N -0.86 -4.80 8.87 31.22 0.28 -4.53 16 23 O -0.53 -8.33 16.82 5.56 0.09 -8.24 16 24 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 25 H 0.10 2.88 6.49 -52.49 -0.34 2.54 16 26 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 30 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 31 H 0.39 4.00 8.47 -40.82 -0.35 3.65 16 32 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 0.88 8.83 -40.82 -0.36 0.52 16 37 H 0.40 2.01 8.93 -40.82 -0.36 1.65 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -35.84 320.77 -7.44 -43.28 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.57 Total: 10.45 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.41 Total: -18.31 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.63 Total: -36.28 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.84 -7.44 -43.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.718 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds