Wall clock time and date at job start Mon Mar 30 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47103 * 180.02562 * 19 18 16 21 21 C 1.50706 * 109.46825 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99455 * 179.97438 * 21 20 19 23 23 O 1.21276 * 120.00153 * 0.02562 * 21 20 19 24 24 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 25 25 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 29 29 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 30 30 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 31 31 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 32 32 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 33 33 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 34 34 H 1.08992 * 109.47355 * 299.99774 * 20 19 18 35 35 H 1.09003 * 109.47571 * 60.00046 * 20 19 18 36 36 H 0.97000 * 120.00563 * 0.02562 * 22 21 20 37 37 H 0.97000 * 119.99739 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7700 -3.9356 -1.4474 21 6 9.1202 -3.9023 -0.7787 22 7 10.2417 -4.0005 -1.5197 23 8 9.1975 -3.7882 0.4262 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0691 -1.3040 1.8430 26 1 -0.9698 -3.3393 2.7431 27 1 -0.2416 -5.5537 1.9556 28 1 1.5304 -5.7534 0.2610 29 1 2.7709 -4.7177 -1.4995 30 1 2.8121 -2.9465 -1.6708 31 1 5.2988 -3.9312 -2.0021 32 1 6.7917 -2.8647 0.1451 33 1 6.7498 -4.6358 0.3162 34 1 7.6517 -4.8785 -1.9811 35 1 7.6934 -3.1072 -2.1518 36 1 10.1799 -4.0921 -2.4834 37 1 11.1108 -3.9787 -1.0894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777405979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:47 Heat of formation + Delta-G solvation = -105.494686 kcal Electronic energy + Delta-G solvation = -20631.949768 eV Core-core repulsion = 17371.642402 eV Total energy + Delta-G solvation = -3260.307367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97658 -40.41182 -39.28516 -36.13278 -35.72040 -34.67916 -33.60676 -31.74038 -31.08315 -28.54605 -26.82926 -24.97063 -22.81603 -22.29195 -21.64981 -20.98709 -19.60365 -18.37973 -17.93057 -17.54465 -17.07552 -16.91250 -16.45285 -16.41355 -15.81493 -15.61949 -15.30738 -14.71370 -14.51479 -14.37736 -14.14547 -13.84347 -13.51535 -12.98447 -12.90045 -12.79952 -12.59873 -12.41547 -12.22901 -11.97505 -11.47330 -11.20481 -11.19546 -10.84038 -10.78897 -10.67130 -10.06187 -9.43225 -9.41427 -9.04284 -6.38183 0.92178 1.00150 1.47385 1.61822 1.62885 1.77284 1.81100 2.13461 2.31929 2.71846 2.85986 3.59887 3.66834 4.07834 4.09592 4.19211 4.31740 4.40997 4.52237 4.55774 4.60176 4.74259 4.85173 4.95443 5.03586 5.09259 5.34417 5.49200 5.51796 5.81679 5.85799 5.89764 6.00439 6.06532 6.30890 6.45927 6.47014 6.69123 6.88345 7.03934 7.35475 7.45161 8.09991 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.004819 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.876285 B = 5809.242309 C = 7086.902137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.005 3.995 3 Si 1.106 2.894 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.085 3.915 10 C -0.247 4.247 11 C -0.098 4.098 12 C -0.252 4.252 13 C -0.081 4.081 14 C -0.191 4.191 15 C -0.067 4.067 16 C 0.512 3.488 17 O -0.580 6.580 18 N -0.719 5.719 19 C 0.135 3.865 20 C -0.138 4.138 21 C 0.515 3.485 22 N -0.833 5.833 23 O -0.602 6.602 24 H 0.284 0.716 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.420 0.580 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.422 0.578 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.564 -7.028 -12.770 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.924 3.076 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.082 3.918 10 C -0.267 4.267 11 C -0.116 4.116 12 C -0.271 4.271 13 C -0.099 4.099 14 C -0.193 4.193 15 C -0.106 4.106 16 C 0.300 3.700 17 O -0.459 6.459 18 N -0.374 5.374 19 C 0.010 3.990 20 C -0.178 4.178 21 C 0.301 3.699 22 N -0.397 5.397 23 O -0.483 6.483 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.258 0.742 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.254 0.746 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 15.232 -5.239 -11.138 19.584 hybrid contribution 0.176 -1.618 -0.026 1.628 sum 15.408 -6.857 -11.164 20.225 Atomic orbital electron populations 1.70550 1.08861 1.33223 1.31721 1.28200 0.95727 1.07111 0.90048 0.83144 0.74932 0.70630 0.78846 1.19342 1.20533 1.17290 1.20559 1.02700 0.94921 1.38849 0.91237 1.17798 0.90766 0.93411 0.89790 1.21157 1.05261 0.96938 1.03331 1.20898 0.98768 0.93223 0.98748 1.20721 1.04493 0.96319 1.05554 1.20832 0.95743 0.97152 0.96180 1.19561 1.03152 0.92861 1.03691 1.20280 0.88341 1.04840 0.97183 1.21246 0.87113 0.74435 0.87182 1.90689 1.88051 1.49734 1.17392 1.45753 1.04469 1.75691 1.11475 1.20830 0.81829 1.00923 0.95419 1.21758 0.88946 1.08489 0.98593 1.20826 0.88029 0.74391 0.86703 1.43672 1.07946 1.75586 1.12513 1.90803 1.88454 1.51601 1.17399 0.90365 0.89951 0.87359 0.86350 0.86101 0.86305 0.88243 0.74231 0.94414 0.93535 0.84191 0.84769 0.74620 0.76207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.50 12.32 21.82 0.27 -45.23 16 2 C 0.01 0.28 4.94 85.25 0.42 0.70 16 3 Si 1.11 45.39 30.00 68.60 2.06 47.45 16 4 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 7 C -0.54 -29.75 8.08 23.46 0.19 -29.56 16 8 H 0.07 3.72 6.73 -2.91 -0.02 3.70 16 9 C 0.08 4.71 5.30 -21.29 -0.11 4.59 16 10 C -0.25 -13.82 7.95 22.73 0.18 -13.64 16 11 C -0.10 -4.86 10.02 22.22 0.22 -4.64 16 12 C -0.25 -11.49 10.05 22.46 0.23 -11.26 16 13 C -0.08 -3.64 9.66 22.22 0.21 -3.43 16 14 C -0.19 -9.21 4.43 -19.40 -0.09 -9.30 16 15 C -0.07 -2.50 5.18 29.10 0.15 -2.35 16 16 C 0.51 19.93 7.46 87.66 0.65 20.58 16 17 O -0.58 -29.85 16.03 -3.04 -0.05 -29.90 16 18 N -0.72 -18.93 5.56 -463.07 -2.57 -21.50 16 19 C 0.13 3.62 4.96 86.38 0.43 4.05 16 20 C -0.14 -1.83 5.81 29.85 0.17 -1.65 16 21 C 0.52 9.48 8.10 87.66 0.71 10.19 16 22 N -0.83 -6.81 8.87 -173.53 -1.54 -8.35 16 23 O -0.60 -19.00 16.82 -3.02 -0.05 -19.05 16 24 H 0.28 16.36 6.68 -92.71 -0.62 15.74 16 25 H 0.08 4.83 6.49 -2.91 -0.02 4.81 16 26 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 27 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.12 3.35 8.05 -2.39 -0.02 3.33 16 30 H 0.10 3.65 7.06 -2.39 -0.02 3.63 16 31 H 0.42 6.77 8.47 -92.71 -0.79 5.99 16 32 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.42 0.05 8.83 -92.71 -0.82 -0.77 16 37 H 0.41 3.11 8.93 -92.71 -0.83 2.28 16 Total: -1.00 -84.79 320.77 0.33 -84.46 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -1.15 Total: 27.83 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.37 Total: -35.71 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -3.84 Total: -75.08 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -0.10 Total: -48.95 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.06 Total: 47.45 kcal Total: -84.79 0.33 -84.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777405979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.035 kcal (2) G-P(sol) polarization free energy of solvation -84.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds