Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48500 * 109.47247 * 239.99862 * 3 2 1 5 5 H 1.48496 * 109.47485 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46869 * 120.00071 * 3 2 1 7 7 C 1.38654 * 119.99331 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99414 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.35761 * 116.99975 * 185.07480 * 9 7 2 11 11 C 1.39018 * 119.99310 * 174.47021 * 10 9 7 12 12 C 1.38213 * 120.24691 * 179.97438 * 11 10 9 13 13 C 1.38026 * 120.22703 * 0.02562 * 12 11 10 14 14 C 1.39712 * 119.98260 * 359.97438 * 13 12 11 15 15 C 1.47495 * 120.12535 * 179.97438 * 14 13 12 16 16 N 1.29748 * 119.99699 * 0.02562 * 15 14 13 17 17 N 1.40105 * 119.99657 * 179.97438 * 16 15 14 18 18 C 1.46501 * 119.99500 * 180.27279 * 17 16 15 19 19 H 1.08996 * 110.43883 * 330.42407 * 18 17 16 20 20 C 1.54811 * 110.48625 * 207.87947 * 18 17 16 21 21 C 1.55225 * 101.98909 * 220.52083 * 20 18 17 22 22 O 1.44383 * 103.56485 * 36.88336 * 21 20 18 23 23 C 1.43748 * 106.97163 * 320.01141 * 22 21 20 24 24 C 1.38573 * 119.99153 * 354.70948 * 10 9 7 25 25 H 0.97005 * 119.99813 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.87799 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.88924 * 179.97438 * 12 11 10 28 28 H 1.08001 * 120.00666 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.00523 * 179.97438 * 15 14 13 30 30 H 0.96998 * 120.00170 * 359.97438 * 17 16 15 31 31 H 1.09003 * 110.91114 * 338.64668 * 20 18 17 32 32 H 1.09005 * 110.90607 * 102.24889 * 20 18 17 33 33 H 1.09003 * 110.52200 * 278.38636 * 21 20 18 34 34 H 1.09001 * 110.77737 * 155.50273 * 21 20 18 35 35 H 1.09005 * 109.87896 * 267.08454 * 23 22 21 36 36 H 1.09000 * 109.87442 * 145.94487 * 23 22 21 37 37 H 1.08001 * 120.11495 * 0.04131 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0697 -3.5047 0.1081 11 6 1.4339 -4.7348 0.2303 12 6 2.1772 -5.8949 0.3396 13 6 3.5563 -5.8402 0.3287 14 6 4.2052 -4.6090 0.2063 15 6 5.6788 -4.5468 0.1948 16 7 6.3749 -5.6368 0.2980 17 7 7.7747 -5.5778 0.2866 18 6 8.5606 -6.8092 0.3971 19 1 8.0173 -7.5569 0.9748 20 6 9.9359 -6.5178 1.0453 21 6 10.8859 -7.4080 0.2000 22 8 10.3380 -7.3176 -1.1328 23 6 8.9070 -7.3552 -1.0016 24 6 3.4538 -3.4374 0.1010 25 1 -0.4850 0.8401 0.0004 26 1 0.3551 -4.7842 0.2399 27 1 1.6772 -6.8475 0.4347 28 1 4.1336 -6.7489 0.4147 29 1 6.1784 -3.5940 0.0997 30 1 8.2233 -4.7221 0.2011 31 1 10.1981 -5.4646 0.9447 32 1 9.9445 -6.8211 2.0923 33 1 10.8618 -8.4380 0.5558 34 1 11.9037 -7.0186 0.2238 35 1 8.5529 -8.3818 -1.0969 36 1 8.4480 -6.7303 -1.7677 37 1 3.9495 -2.4822 0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788456850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = -0.217305 kcal Electronic energy + Delta-G solvation = -19873.710606 eV Core-core repulsion = 16617.968408 eV Total energy + Delta-G solvation = -3255.742197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70300 -38.99914 -37.03097 -35.95383 -33.34020 -32.24426 -30.92925 -29.69588 -28.82284 -27.39849 -25.29975 -23.45522 -22.65827 -21.62646 -21.28097 -19.96845 -18.04757 -17.12936 -16.96574 -16.47638 -16.18863 -15.53018 -15.03652 -14.67529 -14.31038 -14.23416 -13.68399 -13.55300 -13.44193 -12.88001 -12.80577 -12.50432 -12.24443 -11.89885 -11.79679 -11.68028 -11.30480 -11.16420 -10.83627 -10.77878 -10.73109 -10.47151 -10.05476 -9.91359 -9.40055 -8.89383 -8.65675 -7.53855 -7.15398 -6.43782 -4.03508 1.49139 2.35966 2.81073 3.03031 3.13181 3.16541 3.17058 3.64280 3.96984 4.19168 4.54212 4.64803 4.67699 4.78418 4.95896 5.07033 5.11116 5.23684 5.29698 5.32072 5.41576 5.48815 5.60967 5.70592 5.81386 5.97935 6.07738 6.21125 6.43728 6.54306 6.70057 6.82267 7.05622 7.09623 7.28280 7.34287 7.41239 7.78240 8.00186 8.49375 9.01696 9.71780 10.74294 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.003229 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.664033 B = 8669.240617 C = 9683.162751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.149 3.851 11 C -0.179 4.179 12 C -0.084 4.084 13 C -0.174 4.174 14 C -0.007 4.007 15 C 0.087 3.913 16 N -0.236 5.236 17 N -0.661 5.661 18 C 0.159 3.841 19 H 0.096 0.904 20 C -0.164 4.164 21 C 0.048 3.952 22 O -0.380 6.380 23 C 0.027 3.973 24 C -0.208 4.208 25 H 0.270 0.730 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.375 0.625 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.917 -11.370 1.895 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.096 3.904 11 C -0.199 4.199 12 C -0.102 4.102 13 C -0.195 4.195 14 C -0.010 4.010 15 C -0.124 4.124 16 N -0.042 5.042 17 N -0.398 5.398 18 C 0.052 3.948 19 H 0.115 0.885 20 C -0.203 4.203 21 C -0.030 4.030 22 O -0.298 6.298 23 C -0.052 4.052 24 C -0.230 4.230 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.213 0.787 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.693 -12.300 1.793 20.812 hybrid contribution 0.802 2.072 0.064 2.223 sum 17.494 -10.228 1.856 20.349 Atomic orbital electron populations 1.70030 1.05934 1.27725 1.46171 1.25262 0.95818 0.98756 0.96605 0.85809 0.78726 0.79925 0.79133 1.19529 1.20303 1.19542 1.21240 0.91707 0.80884 1.53093 0.89187 1.84002 1.34025 1.11304 1.78885 1.19188 0.89896 0.88246 0.93046 1.20363 0.99749 0.90368 1.09439 1.20616 0.93605 0.96815 0.99210 1.20769 0.93984 0.96488 1.08297 1.18009 0.88521 0.93615 1.00844 1.24117 0.93873 0.93778 1.00619 1.74225 0.91365 1.27406 1.11217 1.47978 0.99462 1.06879 1.85519 1.21886 0.90698 0.87262 0.94995 0.88547 1.23477 0.94308 1.01812 1.00681 1.23553 0.97958 0.98969 0.82472 1.88904 1.19169 1.95161 1.26584 1.23914 0.81396 1.01183 0.98677 1.21179 0.93665 0.97781 1.10368 0.91998 0.86415 0.86779 0.86671 0.87678 0.78719 0.89964 0.89280 0.91843 0.88743 0.91728 0.89255 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.79 9.48 30.89 0.29 -10.50 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 9 O -0.18 -5.00 9.76 0.04 0.00 -5.00 16 10 C 0.15 3.54 6.64 -39.17 -0.26 3.28 16 11 C -0.18 -3.71 9.98 -39.30 -0.39 -4.10 16 12 C -0.08 -1.49 10.02 -39.67 -0.40 -1.89 16 13 C -0.17 -3.10 9.58 -39.11 -0.37 -3.47 16 14 C -0.01 -0.14 5.87 -105.07 -0.62 -0.75 16 15 C 0.09 1.39 10.75 -14.66 -0.16 1.23 16 16 N -0.24 -3.53 10.61 32.16 0.34 -3.19 16 17 N -0.66 -7.92 6.08 -3.59 -0.02 -7.94 16 18 C 0.16 1.55 4.07 -66.40 -0.27 1.28 16 19 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.16 -1.19 6.89 -24.60 -0.17 -1.36 16 21 C 0.05 0.34 7.72 38.34 0.30 0.64 16 22 O -0.38 -4.09 11.52 -35.23 -0.41 -4.50 16 23 C 0.03 0.28 7.50 37.73 0.28 0.56 16 24 C -0.21 -4.40 8.91 -38.96 -0.35 -4.75 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.12 1.88 7.55 -52.49 -0.40 1.48 16 29 H 0.11 1.48 8.02 -52.49 -0.42 1.06 16 30 H 0.37 4.05 8.39 -182.60 -1.53 2.52 16 31 H 0.08 0.60 7.80 -51.93 -0.40 0.19 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.13 2.70 5.63 -52.49 -0.30 2.41 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -30.97 321.09 -7.55 -38.53 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.83 Total: 5.26 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.21 Total: -18.85 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 1.08 Total: -35.50 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.41 Total: -9.50 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.97 -7.55 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788456850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.308 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds