Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48500 * 109.47247 * 239.99862 * 3 2 1 5 5 H 1.48496 * 109.47485 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46869 * 120.00071 * 3 2 1 7 7 C 1.38654 * 119.99331 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99414 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.35761 * 116.99975 * 185.07480 * 9 7 2 11 11 C 1.39018 * 119.99310 * 174.47021 * 10 9 7 12 12 C 1.38213 * 120.24691 * 179.97438 * 11 10 9 13 13 C 1.38026 * 120.22703 * 0.02562 * 12 11 10 14 14 C 1.39712 * 119.98260 * 359.97438 * 13 12 11 15 15 C 1.47495 * 120.12535 * 179.97438 * 14 13 12 16 16 N 1.29748 * 119.99699 * 0.02562 * 15 14 13 17 17 N 1.40105 * 119.99657 * 179.97438 * 16 15 14 18 18 C 1.46501 * 119.99500 * 180.27279 * 17 16 15 19 19 H 1.08996 * 110.43883 * 330.42407 * 18 17 16 20 20 C 1.54811 * 110.48625 * 207.87947 * 18 17 16 21 21 C 1.55225 * 101.98909 * 220.52083 * 20 18 17 22 22 O 1.44383 * 103.56485 * 36.88336 * 21 20 18 23 23 C 1.43748 * 106.97163 * 320.01141 * 22 21 20 24 24 C 1.38573 * 119.99153 * 354.70948 * 10 9 7 25 25 H 0.97005 * 119.99813 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.87799 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.88924 * 179.97438 * 12 11 10 28 28 H 1.08001 * 120.00666 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.00523 * 179.97438 * 15 14 13 30 30 H 0.96998 * 120.00170 * 359.97438 * 17 16 15 31 31 H 1.09003 * 110.91114 * 338.64668 * 20 18 17 32 32 H 1.09005 * 110.90607 * 102.24889 * 20 18 17 33 33 H 1.09003 * 110.52200 * 278.38636 * 21 20 18 34 34 H 1.09001 * 110.77737 * 155.50273 * 21 20 18 35 35 H 1.09005 * 109.87896 * 267.08454 * 23 22 21 36 36 H 1.09000 * 109.87442 * 145.94487 * 23 22 21 37 37 H 1.08001 * 120.11495 * 0.04131 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2009 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0697 -3.5047 0.1081 11 6 1.4339 -4.7348 0.2303 12 6 2.1772 -5.8949 0.3396 13 6 3.5563 -5.8402 0.3287 14 6 4.2052 -4.6090 0.2063 15 6 5.6788 -4.5468 0.1948 16 7 6.3749 -5.6368 0.2980 17 7 7.7747 -5.5778 0.2866 18 6 8.5606 -6.8092 0.3971 19 1 8.0173 -7.5569 0.9748 20 6 9.9359 -6.5178 1.0453 21 6 10.8859 -7.4080 0.2000 22 8 10.3380 -7.3176 -1.1328 23 6 8.9070 -7.3552 -1.0016 24 6 3.4538 -3.4374 0.1010 25 1 -0.4850 0.8401 0.0004 26 1 0.3551 -4.7842 0.2399 27 1 1.6772 -6.8475 0.4347 28 1 4.1336 -6.7489 0.4147 29 1 6.1784 -3.5940 0.0997 30 1 8.2233 -4.7221 0.2011 31 1 10.1981 -5.4646 0.9447 32 1 9.9445 -6.8211 2.0923 33 1 10.8618 -8.4380 0.5558 34 1 11.9037 -7.0186 0.2238 35 1 8.5529 -8.3818 -1.0969 36 1 8.4480 -6.7303 -1.7677 37 1 3.9495 -2.4822 0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788456850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = -20.924127 kcal Electronic energy + Delta-G solvation = -19874.608521 eV Core-core repulsion = 16617.968408 eV Total energy + Delta-G solvation = -3256.640112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71480 -40.42766 -38.52774 -37.28699 -34.48897 -34.08182 -32.10003 -30.79606 -30.24988 -28.49357 -27.22389 -24.64917 -23.48500 -23.20872 -22.14317 -21.38792 -19.80948 -18.68185 -17.91358 -17.50842 -17.14235 -16.70336 -16.39108 -16.11727 -15.93191 -15.49703 -15.41381 -14.89159 -14.35469 -14.26624 -14.11128 -13.78780 -13.50905 -13.13412 -13.09664 -12.66582 -12.49049 -12.42740 -12.28410 -12.14949 -12.12154 -11.90999 -11.32864 -11.05759 -10.80775 -10.73550 -10.02687 -9.08632 -8.55941 -8.42950 -6.11188 0.04647 0.76983 1.37443 1.46776 1.53305 1.67302 1.79752 2.20732 2.92129 2.98277 3.26144 3.49682 3.55628 3.84732 3.86533 4.04393 4.10146 4.14094 4.29954 4.34658 4.44730 4.51573 4.70211 4.73782 4.74969 4.82758 4.94701 4.97747 5.08333 5.15814 5.18677 5.27691 5.70753 5.72141 5.80058 5.87034 6.05878 6.16293 6.21824 7.01905 7.37365 7.83023 8.80159 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.003229 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.664033 B = 8669.240617 C = 9683.162751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.113 3.887 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.163 4.163 14 C -0.001 4.001 15 C 0.066 3.934 16 N -0.230 5.230 17 N -0.652 5.652 18 C 0.152 3.848 19 H 0.101 0.899 20 C -0.155 4.155 21 C 0.044 3.956 22 O -0.403 6.403 23 C 0.030 3.970 24 C -0.217 4.217 25 H 0.272 0.728 26 H 0.117 0.883 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.383 0.617 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.088 -13.013 2.587 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.063 3.937 11 C -0.214 4.214 12 C -0.088 4.088 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.145 4.145 16 N -0.037 5.037 17 N -0.390 5.390 18 C 0.046 3.954 19 H 0.119 0.881 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.322 6.322 23 C -0.049 4.049 24 C -0.239 4.239 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.173 0.827 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.222 0.778 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.911 -14.000 2.489 24.467 hybrid contribution 0.072 2.169 -0.133 2.175 sum 19.983 -11.831 2.356 23.342 Atomic orbital electron populations 1.70184 1.08014 1.28757 1.49079 1.26549 0.96803 1.02665 0.95993 0.84684 0.77416 0.74446 0.79923 1.18151 1.19850 1.18137 1.21775 0.92555 0.81450 1.53080 0.87959 1.83965 1.35678 1.12456 1.81697 1.19730 0.91185 0.88114 0.94644 1.20619 1.00229 0.90537 1.10063 1.21034 0.93686 0.97270 0.96832 1.21168 0.94218 0.97009 1.05953 1.18208 0.90193 0.92898 0.99067 1.23835 0.92565 0.94800 1.03313 1.74063 0.93202 1.27368 1.09044 1.48162 0.98297 1.08295 1.84225 1.22126 0.91671 0.86447 0.95149 0.88132 1.23463 0.92354 1.02024 1.01498 1.23788 0.98521 1.00062 0.80865 1.88884 1.19229 1.95326 1.28771 1.23824 0.81504 1.01304 0.98261 1.21197 0.92917 0.98800 1.11008 0.91932 0.86491 0.82668 0.84212 0.86240 0.77820 0.89829 0.87405 0.90286 0.87189 0.90894 0.91104 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.44 13.67 21.61 0.30 -56.14 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 3 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -23.73 9.48 67.92 0.64 -23.08 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.77 9.76 -22.78 -0.22 -13.99 16 10 C 0.11 5.58 6.64 22.54 0.15 5.73 16 11 C -0.19 -8.14 9.98 22.45 0.22 -7.92 16 12 C -0.07 -2.34 10.02 22.21 0.22 -2.12 16 13 C -0.16 -5.34 9.58 22.58 0.22 -5.13 16 14 C 0.00 -0.05 5.87 -20.16 -0.12 -0.17 16 15 C 0.07 1.96 10.75 87.44 0.94 2.90 16 16 N -0.23 -6.21 10.61 -52.16 -0.55 -6.77 16 17 N -0.65 -13.75 6.08 -165.28 -1.01 -14.76 16 18 C 0.15 2.51 4.07 45.98 0.19 2.70 16 19 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.15 -1.71 6.89 31.98 0.22 -1.49 16 21 C 0.04 0.50 7.72 72.75 0.56 1.06 16 22 O -0.40 -7.78 11.52 -148.98 -1.72 -9.49 16 23 C 0.03 0.55 7.50 72.35 0.54 1.09 16 24 C -0.22 -9.36 8.91 22.67 0.20 -9.16 16 25 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 26 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 27 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.14 3.97 7.55 -2.91 -0.02 3.94 16 29 H 0.12 3.17 8.02 -2.91 -0.02 3.14 16 30 H 0.38 7.22 8.39 -213.32 -1.79 5.43 16 31 H 0.08 0.94 7.80 -2.39 -0.02 0.92 16 32 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.55 7.93 -2.39 -0.02 1.53 16 37 H 0.13 5.36 5.63 -2.91 -0.02 5.35 16 Total: -1.00 -70.86 321.09 2.58 -68.27 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.70 Total: 24.85 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 4.46 Total: -36.42 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.26 Total: -77.67 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.94 Total: -23.48 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.86 2.58 -68.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788456850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.348 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds