Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.34230 * 117.00158 * 180.02562 * 12 11 10 14 14 O 1.20820 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99832 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.47184 * 59.99688 * 15 13 12 17 17 C 1.52997 * 109.46757 * 179.97438 * 15 13 12 18 18 C 1.52998 * 109.46853 * 180.02562 * 17 15 13 19 19 C 1.53005 * 109.46887 * 299.99328 * 18 17 15 20 20 C 1.53007 * 109.46816 * 60.00643 * 19 18 17 21 21 F 1.39899 * 109.47221 * 59.99397 * 20 19 18 22 22 F 1.39898 * 109.47146 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.46867 * 299.99766 * 20 19 18 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.08999 * 109.47855 * 300.00574 * 11 10 9 30 30 H 1.09001 * 109.46830 * 60.00639 * 11 10 9 31 31 H 1.09004 * 109.47052 * 299.99282 * 17 15 13 32 32 H 1.09001 * 109.47440 * 59.99953 * 17 15 13 33 33 H 1.09001 * 109.47306 * 59.99662 * 18 17 15 34 34 H 1.09003 * 109.47482 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.47330 * 179.97438 * 19 18 17 36 36 H 1.08989 * 109.47350 * 300.00727 * 19 18 17 37 37 H 1.09005 * 109.47411 * 300.00321 * 23 20 19 38 38 H 1.09003 * 109.47481 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 8 6.0358 -4.0052 0.0191 13 6 7.3665 -4.1810 0.0196 14 8 8.1024 -3.2228 0.0133 15 6 7.9426 -5.5736 0.0269 16 1 7.6063 -6.1106 -0.8601 17 6 9.4704 -5.4934 0.0253 18 6 10.0553 -6.9072 0.0320 19 6 9.5848 -7.6477 1.2856 20 6 8.0568 -7.7279 1.2872 21 9 7.6248 -8.4167 0.1487 22 9 7.6266 -8.4055 2.4330 23 6 7.4720 -6.3141 1.2803 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 5.9143 -2.1273 -0.8817 30 1 5.9156 -2.1176 0.8982 31 1 9.8057 -4.9663 -0.8680 32 1 9.8070 -4.9563 0.9121 33 1 9.7186 -7.4439 -0.8549 34 1 11.1438 -6.8502 0.0314 35 1 10.0010 -8.6551 1.2902 36 1 9.9213 -7.1110 2.1724 37 1 7.8086 -5.7773 2.1673 38 1 6.3834 -6.3711 1.2819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800280677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = -222.631102 kcal Electronic energy + Delta-G solvation = -21466.429589 eV Core-core repulsion = 17750.353620 eV Total energy + Delta-G solvation = -3716.075970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.27893 -47.26093 -40.67488 -37.97417 -36.45879 -34.12656 -32.20067 -31.67918 -30.35333 -27.71557 -24.93488 -23.34901 -22.80718 -21.18972 -20.41371 -20.04437 -17.98419 -17.38464 -17.25913 -16.82774 -16.75607 -16.17819 -15.80157 -15.34261 -14.56338 -14.26224 -14.18252 -13.85314 -13.64722 -13.57065 -13.19882 -12.95077 -12.77576 -12.67038 -12.48692 -12.15189 -11.97973 -11.70904 -11.32774 -11.24168 -11.09092 -10.99394 -10.92728 -10.50139 -10.47544 -10.01267 -9.83616 -9.74690 -9.27277 -8.58779 -6.08835 -4.08148 2.10760 2.63685 3.28100 3.35836 3.38837 3.39174 3.66608 3.85652 3.97379 4.33961 4.41014 4.44759 4.54721 4.69905 4.77841 4.89159 5.00286 5.24209 5.27011 5.33810 5.38506 5.40987 5.42760 5.43673 5.55022 5.68041 5.81537 5.83840 6.29383 6.35071 6.60905 6.75995 7.17887 7.29279 7.68700 7.77096 8.47690 8.95392 9.52497 11.04336 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.003174 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.226639 B = 8820.755958 C = 9370.599046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.065 3.935 12 O -0.354 6.354 13 C 0.464 3.536 14 O -0.507 6.507 15 C -0.079 4.079 16 H 0.118 0.882 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.161 4.161 20 C 0.294 3.706 21 F -0.197 7.197 22 F -0.199 7.199 23 C -0.154 4.154 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.027 -15.682 1.591 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.008 4.008 12 O -0.270 6.270 13 C 0.306 3.694 14 O -0.395 6.395 15 C -0.098 4.098 16 H 0.136 0.864 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.199 4.199 20 C 0.257 3.743 21 F -0.178 7.178 22 F -0.179 7.179 23 C -0.192 4.192 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.021 -15.274 1.590 26.847 hybrid contribution 0.169 0.947 0.049 0.964 sum 22.190 -14.327 1.639 26.465 Atomic orbital electron populations 1.69906 1.06288 1.27004 1.50784 1.25016 0.94758 0.99181 0.94445 0.86782 0.80356 0.83583 0.78599 1.20193 1.19003 1.21260 1.21053 0.89024 0.94693 1.51268 0.90781 1.19521 0.97565 0.91031 0.96661 1.21567 0.88668 1.00834 1.02889 1.23533 0.97165 0.77928 1.02137 1.86507 1.23155 1.34449 1.82873 1.23311 0.81544 0.91744 0.72759 1.90662 1.60739 1.42896 1.45226 1.20995 0.96990 0.91034 1.00779 0.86401 1.21550 0.91342 0.97111 1.04764 1.21533 1.01659 0.95117 0.97226 1.22585 0.91597 1.03943 1.01759 1.20974 0.94372 0.87331 0.71590 1.93011 1.91481 1.81756 1.51522 1.93028 1.91606 1.82258 1.51047 1.22508 1.04353 0.92867 0.99480 0.92616 0.96280 0.96731 0.91501 0.91462 0.91436 0.91480 0.89828 0.90271 0.90480 0.89716 0.89172 0.88498 0.88053 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.59 27.46 -169.99 -4.67 16.92 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.25 6.55 56.52 0.37 -5.88 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -2.00 5.53 -26.73 -0.15 -2.14 16 11 C 0.07 1.11 5.47 37.16 0.20 1.31 16 12 O -0.35 -5.41 10.12 -39.26 -0.40 -5.81 16 13 C 0.46 6.25 7.26 36.01 0.26 6.51 16 14 O -0.51 -8.04 15.73 -18.75 -0.29 -8.34 16 15 C -0.08 -0.74 2.51 -91.77 -0.23 -0.97 16 16 H 0.12 1.02 7.80 -51.93 -0.41 0.61 16 17 C -0.11 -0.84 4.49 -26.73 -0.12 -0.96 16 18 C -0.12 -0.65 5.80 -26.73 -0.16 -0.81 16 19 C -0.16 -0.96 5.45 -26.72 -0.15 -1.10 16 20 C 0.29 2.52 2.10 -26.73 -0.06 2.46 16 21 F -0.20 -1.98 16.02 2.25 0.04 -1.94 16 22 F -0.20 -2.04 17.06 2.25 0.04 -2.00 16 23 C -0.15 -1.36 4.67 -26.73 -0.12 -1.48 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.44 7.21 -51.93 -0.37 0.07 16 26 H 0.01 0.33 7.56 -51.93 -0.39 -0.06 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 31 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.08 0.44 7.80 -51.93 -0.41 0.03 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.47 8.14 -51.94 -0.42 0.05 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -31.92 319.69 -6.56 -38.48 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.81 Total: -4.36 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.06 Total: -10.82 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.69 Total: -14.15 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.92 -6.56 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800280677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.154 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds