Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.34230 * 117.00158 * 180.02562 * 12 11 10 14 14 O 1.20820 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99832 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.47184 * 59.99688 * 15 13 12 17 17 C 1.52997 * 109.46757 * 179.97438 * 15 13 12 18 18 C 1.52998 * 109.46853 * 180.02562 * 17 15 13 19 19 C 1.53005 * 109.46887 * 299.99328 * 18 17 15 20 20 C 1.53007 * 109.46816 * 60.00643 * 19 18 17 21 21 F 1.39899 * 109.47221 * 59.99397 * 20 19 18 22 22 F 1.39898 * 109.47146 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.46867 * 299.99766 * 20 19 18 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.08999 * 109.47855 * 300.00574 * 11 10 9 30 30 H 1.09001 * 109.46830 * 60.00639 * 11 10 9 31 31 H 1.09004 * 109.47052 * 299.99282 * 17 15 13 32 32 H 1.09001 * 109.47440 * 59.99953 * 17 15 13 33 33 H 1.09001 * 109.47306 * 59.99662 * 18 17 15 34 34 H 1.09003 * 109.47482 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.47330 * 179.97438 * 19 18 17 36 36 H 1.08989 * 109.47350 * 300.00727 * 19 18 17 37 37 H 1.09005 * 109.47411 * 300.00321 * 23 20 19 38 38 H 1.09003 * 109.47481 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 8 6.0358 -4.0052 0.0191 13 6 7.3665 -4.1810 0.0196 14 8 8.1024 -3.2228 0.0133 15 6 7.9426 -5.5736 0.0269 16 1 7.6063 -6.1106 -0.8601 17 6 9.4704 -5.4934 0.0253 18 6 10.0553 -6.9072 0.0320 19 6 9.5848 -7.6477 1.2856 20 6 8.0568 -7.7279 1.2872 21 9 7.6248 -8.4167 0.1487 22 9 7.6266 -8.4055 2.4330 23 6 7.4720 -6.3141 1.2803 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 5.9143 -2.1273 -0.8817 30 1 5.9156 -2.1176 0.8982 31 1 9.8057 -4.9663 -0.8680 32 1 9.8070 -4.9563 0.9121 33 1 9.7186 -7.4439 -0.8549 34 1 11.1438 -6.8502 0.0314 35 1 10.0010 -8.6551 1.2902 36 1 9.9213 -7.1110 2.1724 37 1 7.8086 -5.7773 2.1673 38 1 6.3834 -6.3711 1.2819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800280677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -240.027102 kcal Electronic energy + Delta-G solvation = -21467.183936 eV Core-core repulsion = 17750.353620 eV Total energy + Delta-G solvation = -3716.830317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.99972 -47.99875 -41.77036 -38.78618 -37.59596 -35.95885 -33.92384 -32.63108 -30.98514 -29.47514 -25.99404 -24.52277 -23.77732 -22.17187 -21.97656 -20.90722 -19.03896 -18.88991 -18.25594 -18.11324 -17.58610 -17.14103 -16.86666 -16.28615 -16.12487 -15.46454 -15.20180 -14.83651 -14.70246 -14.49948 -14.33013 -14.10404 -13.84551 -13.74433 -13.63140 -13.32387 -12.91479 -12.80705 -12.64643 -12.40739 -12.11657 -12.02296 -11.89211 -11.79811 -11.76898 -11.62585 -11.41894 -11.38205 -11.13825 -10.78882 -8.31454 -6.36912 1.03767 1.36177 1.37773 1.49472 1.56176 2.34713 2.72570 3.02882 3.03664 3.19500 3.33108 3.63457 3.74701 3.85936 3.98086 4.00246 4.07868 4.12686 4.24618 4.36411 4.43528 4.68548 4.71540 4.72099 4.75674 4.88012 4.90282 4.93727 5.09127 5.12149 5.30631 5.33575 5.46794 5.49250 5.61038 6.24210 6.61768 6.71429 7.27793 8.85223 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.003174 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.226639 B = 8820.755958 C = 9370.599046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.245 1.245 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.034 0.966 9 C -0.009 4.009 10 C -0.094 4.094 11 C 0.074 3.926 12 O -0.360 6.360 13 C 0.464 3.536 14 O -0.529 6.529 15 C -0.072 4.072 16 H 0.127 0.873 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.157 4.157 20 C 0.289 3.711 21 F -0.207 7.207 22 F -0.210 7.210 23 C -0.154 4.154 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.934 -15.544 1.698 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.169 1.169 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.052 0.948 9 C -0.046 4.046 10 C -0.131 4.131 11 C 0.001 3.999 12 O -0.277 6.277 13 C 0.308 3.692 14 O -0.419 6.419 15 C -0.091 4.091 16 H 0.144 0.856 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.194 4.194 20 C 0.253 3.747 21 F -0.188 7.188 22 F -0.191 7.191 23 C -0.192 4.192 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.946 -15.164 1.696 29.243 hybrid contribution -0.800 0.801 0.018 1.132 sum 24.146 -14.363 1.714 28.148 Atomic orbital electron populations 1.70062 1.08342 1.28307 1.52350 1.26025 0.95647 1.03607 0.93972 0.85644 0.79522 0.78078 0.79339 1.19006 1.16858 1.20902 1.21413 0.91775 0.93342 1.50838 0.94762 1.19446 0.94247 0.93695 0.97237 1.21325 0.90921 0.98388 1.02498 1.23196 0.95054 0.79045 1.02632 1.86505 1.24671 1.33270 1.83220 1.24089 0.80455 0.93102 0.71524 1.90651 1.60878 1.44027 1.46314 1.21108 0.98188 0.88372 1.01391 0.85565 1.21578 0.89643 0.98596 1.04662 1.21522 1.02844 0.93415 0.97003 1.22631 0.89146 1.05030 1.02615 1.21260 0.96119 0.86537 0.70817 1.92991 1.91794 1.81971 1.52057 1.93005 1.91936 1.82460 1.51691 1.22501 1.03706 0.93383 0.99612 0.92365 0.95578 0.95657 0.91913 0.91997 0.91036 0.90899 0.90101 0.90276 0.90445 0.87450 0.87963 0.87091 0.87069 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.46 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 43.92 27.46 68.60 1.88 45.80 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.25 -10.44 6.55 99.48 0.65 -9.79 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.63 5.53 30.59 0.17 -3.47 16 11 C 0.07 2.41 5.47 71.98 0.39 2.80 16 12 O -0.36 -10.66 10.12 -51.42 -0.52 -11.18 16 13 C 0.46 11.87 7.26 71.24 0.52 12.39 16 14 O -0.53 -15.99 15.73 21.98 0.35 -15.64 16 15 C -0.07 -1.23 2.51 -11.54 -0.03 -1.26 16 16 H 0.13 1.98 7.80 -2.39 -0.02 1.96 16 17 C -0.11 -1.38 4.49 30.59 0.14 -1.24 16 18 C -0.11 -0.89 5.80 30.60 0.18 -0.71 16 19 C -0.16 -1.42 5.45 30.60 0.17 -1.26 16 20 C 0.29 4.48 2.10 30.60 0.06 4.54 16 21 F -0.21 -3.89 16.02 44.97 0.72 -3.17 16 22 F -0.21 -4.07 17.06 44.97 0.77 -3.30 16 23 C -0.15 -2.51 4.67 30.59 0.14 -2.37 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.03 1.17 7.21 -2.39 -0.02 1.15 16 26 H 0.03 1.11 7.56 -2.39 -0.02 1.09 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 30 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 31 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 32 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.08 0.66 7.80 -2.39 -0.02 0.64 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 Total: -1.00 -69.25 319.69 7.05 -62.20 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.99 Total: 5.56 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 2.57 Total: -20.80 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.17 Total: -26.83 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 1.49 Total: -6.48 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -69.25 7.05 -62.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800280677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.831 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds