Wall clock time and date at job start Mon Mar 30 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46866 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46945 * 299.99643 * 3 2 1 6 6 H 1.48492 * 109.47235 * 60.00029 * 3 2 1 7 7 C 1.37874 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99458 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47147 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47451 * 180.02562 * 11 10 9 13 13 C 1.34231 * 117.00091 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99666 * 180.02562 * 13 12 11 16 16 C 1.52994 * 110.05538 * 301.40920 * 15 13 12 17 17 F 1.39902 * 109.47084 * 58.58828 * 16 15 13 18 18 F 1.39896 * 109.47034 * 178.58593 * 16 15 13 19 19 C 1.54264 * 110.02910 * 179.97438 * 15 13 12 20 20 C 1.54897 * 104.19493 * 264.32402 * 19 15 13 21 21 C 1.54889 * 102.74591 * 322.05796 * 20 19 15 22 22 C 1.53873 * 110.03254 * 62.82832 * 15 13 12 23 23 H 0.97002 * 119.99741 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46669 * 60.00173 * 9 7 2 25 25 H 1.08998 * 109.46964 * 300.00491 * 9 7 2 26 26 H 1.08995 * 109.47178 * 60.00163 * 10 9 7 27 27 H 1.09006 * 109.47413 * 299.99985 * 10 9 7 28 28 H 1.09003 * 109.46766 * 60.00190 * 11 10 9 29 29 H 1.08999 * 109.47373 * 300.00611 * 11 10 9 30 30 H 1.09003 * 109.47569 * 298.58811 * 16 15 13 31 31 H 1.08998 * 110.49036 * 145.64858 * 19 15 13 32 32 H 1.09000 * 110.49063 * 22.99899 * 19 15 13 33 33 H 1.09000 * 110.75568 * 80.37108 * 20 19 15 34 34 H 1.09002 * 110.75327 * 203.73969 * 20 19 15 35 35 H 1.08998 * 110.48466 * 156.62292 * 21 20 19 36 36 H 1.08999 * 110.48474 * 279.26336 * 21 20 19 37 37 H 1.08999 * 110.03697 * 359.97438 * 22 15 13 38 38 H 1.08994 * 110.03428 * 238.56511 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 8 2.4237 -6.0907 0.0024 13 6 1.9106 -7.3311 0.0023 14 8 0.7127 -7.4894 0.0025 15 6 2.8287 -8.5263 0.0033 16 6 3.7431 -8.4864 -1.2227 17 9 4.4875 -7.3019 -1.2108 18 9 4.6112 -9.5830 -1.1927 19 6 2.0012 -9.8282 0.0037 20 6 1.9222 -10.2276 1.4982 21 6 3.3288 -9.8522 2.0270 22 6 3.6724 -8.5418 1.2900 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8725 -3.6039 0.8909 27 1 2.8712 -3.6048 -0.8891 28 1 0.8532 -5.0449 -0.8878 29 1 0.8538 -5.0447 0.8922 30 1 3.1383 -8.5264 -2.1286 31 1 2.5081 -10.6026 -0.5718 32 1 1.0034 -9.6462 -0.3957 33 1 1.1507 -9.6535 2.0112 34 1 1.7429 -11.2976 1.6030 35 1 3.3000 -9.6877 3.1041 36 1 4.0501 -10.6305 1.7781 37 1 3.4182 -7.6847 1.9136 38 1 4.7333 -8.5209 1.0411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808648387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:22 Heat of formation + Delta-G solvation = -218.430486 kcal Electronic energy + Delta-G solvation = -21992.572869 eV Core-core repulsion = 18276.679052 eV Total energy + Delta-G solvation = -3715.893817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.21055 -47.13807 -40.80321 -38.10445 -36.37589 -34.02378 -31.84537 -31.07991 -29.16742 -27.14585 -25.19232 -23.87315 -22.36442 -21.10026 -20.42300 -19.60101 -18.32553 -17.51812 -17.28918 -16.84183 -16.39292 -16.00392 -15.97791 -15.07276 -14.47621 -14.11816 -14.01997 -13.88875 -13.65317 -13.42680 -13.17381 -12.65437 -12.23887 -12.18346 -11.99478 -11.78274 -11.65415 -11.49406 -11.40499 -11.00581 -10.93552 -10.90806 -10.66435 -10.62360 -10.44704 -10.36075 -9.74942 -9.52288 -9.16064 -8.40005 -6.04624 -4.07500 2.02325 2.59938 3.29778 3.37254 3.41847 3.42580 3.77384 3.86201 4.10291 4.42321 4.48941 4.66558 4.70106 4.92174 5.02158 5.07655 5.17538 5.31592 5.32035 5.52035 5.52812 5.56812 5.59268 5.67288 5.77290 5.85723 5.96950 6.02332 6.41305 6.52188 6.77754 6.96576 7.58951 7.69391 7.74973 7.93847 8.34939 8.99002 9.57025 11.06885 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.003512 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.199671 B = 7969.634024 C = 8345.748272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.343 6.343 13 C 0.470 3.530 14 O -0.497 6.497 15 C -0.110 4.110 16 C 0.278 3.722 17 F -0.185 7.185 18 F -0.196 7.196 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.111 4.111 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -22.418 0.475 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.259 6.259 13 C 0.311 3.689 14 O -0.385 6.385 15 C -0.112 4.112 16 C 0.224 3.776 17 F -0.166 7.166 18 F -0.177 7.177 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.910 -22.278 0.473 23.053 hybrid contribution 0.351 1.102 -0.034 1.157 sum 6.262 -21.175 0.439 22.086 Atomic orbital electron populations 1.69978 1.06094 1.26655 1.50677 1.25029 0.94877 0.99382 0.95182 0.86490 0.80128 0.83531 0.77604 1.19636 1.20959 1.20971 1.21213 0.93194 0.90640 1.50838 0.92338 1.19060 0.93831 0.90783 0.97661 1.21766 0.99916 0.90775 1.02150 1.23585 0.91193 0.83601 1.02189 1.86577 1.42336 1.14598 1.82374 1.22756 0.87932 0.84906 0.73325 1.90657 1.16295 1.86645 1.44864 1.22368 0.96041 0.94486 0.98316 1.21577 0.84662 0.71950 0.99378 1.93091 1.78828 1.47035 1.97600 1.92985 1.72516 1.54540 1.97639 1.22469 1.00771 0.92555 0.99102 1.22492 0.97395 1.01602 0.94450 1.22395 0.97086 0.96485 1.00127 1.22172 0.99722 0.99852 0.93109 0.92951 0.96235 0.96246 0.92082 0.91998 0.91395 0.91421 0.86813 0.89531 0.88687 0.90810 0.90584 0.90817 0.90843 0.89913 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 11 C 0.07 1.23 5.47 37.16 0.20 1.43 16 12 O -0.34 -5.70 9.11 -39.26 -0.36 -6.06 16 13 C 0.47 6.89 6.34 36.01 0.23 7.11 16 14 O -0.50 -8.27 15.14 -18.75 -0.28 -8.56 16 15 C -0.11 -1.21 0.59 -154.55 -0.09 -1.30 16 16 C 0.28 2.91 4.12 37.15 0.15 3.06 16 17 F -0.18 -2.46 15.89 2.25 0.04 -2.42 16 18 F -0.20 -1.98 16.09 2.25 0.04 -1.95 16 19 C -0.11 -1.01 5.64 -25.07 -0.14 -1.15 16 20 C -0.12 -1.01 6.91 -24.73 -0.17 -1.18 16 21 C -0.12 -0.99 6.83 -25.10 -0.17 -1.16 16 22 C -0.11 -1.13 5.72 -25.64 -0.15 -1.27 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 29 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 30 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.63 7.35 -51.93 -0.38 0.25 16 32 H 0.09 0.95 6.84 -51.93 -0.36 0.60 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.92 7.66 -51.93 -0.40 0.53 16 38 H 0.08 0.84 7.31 -51.93 -0.38 0.46 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -31.11 321.81 -6.54 -37.65 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.71 Total: -4.14 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.84 Total: -9.88 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.64 Total: -14.62 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.11 -6.54 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808648387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.777 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds