Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38278 * 119.92857 * 269.72492 * 12 11 10 14 14 C 1.38118 * 120.06831 * 179.76617 * 13 12 11 15 15 C 1.38860 * 119.92780 * 0.52890 * 14 13 12 16 16 N 1.39956 * 120.06846 * 179.69775 * 15 14 13 17 17 C 1.47089 * 125.56030 * 359.74596 * 16 15 14 18 18 C 1.54090 * 103.78106 * 179.97438 * 17 16 15 19 19 O 1.45697 * 104.00545 * 0.32278 * 18 17 16 20 20 C 1.33778 * 109.47782 * 359.78533 * 19 18 17 21 21 O 1.21521 * 123.07128 * 180.02562 * 20 19 18 22 22 C 1.38865 * 119.86241 * 359.72463 * 15 14 13 23 23 C 1.38114 * 119.92894 * 0.02562 * 22 15 14 24 24 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 26 26 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 27 27 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 28 28 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 29 29 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 30 30 H 1.07997 * 119.96704 * 359.97438 * 13 12 11 31 31 H 1.08001 * 120.03512 * 180.23231 * 14 13 12 32 32 H 1.09003 * 110.56054 * 298.60936 * 17 16 15 33 33 H 1.09008 * 110.56646 * 61.45563 * 17 16 15 34 34 H 1.08999 * 110.69918 * 241.60344 * 18 17 16 35 35 H 1.08994 * 110.46065 * 118.92192 * 18 17 16 36 36 H 1.08006 * 120.03374 * 179.97438 * 22 15 14 37 37 H 1.08004 * 119.96065 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9720 -6.5421 -1.2005 14 6 3.9008 -7.5643 -1.2045 15 6 4.3674 -8.0811 -0.0031 16 7 5.3039 -9.1212 -0.0038 17 6 5.8712 -9.7607 -1.2007 18 6 6.8316 -10.8218 -0.6296 19 8 6.7001 -10.6759 0.8140 20 6 5.8248 -9.7014 1.0860 21 8 5.5295 -9.3722 2.2179 22 6 3.9025 -7.5641 1.1990 23 6 2.9776 -6.5384 1.1962 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8400 -3.5483 -0.7836 28 1 0.8815 -4.9816 0.8895 29 1 0.8795 -4.9814 -0.8905 30 1 2.6048 -6.1432 -2.1346 31 1 4.2602 -7.9645 -2.1411 32 1 5.0858 -10.2321 -1.7915 33 1 6.4185 -9.0333 -1.8005 34 1 7.8565 -10.6219 -0.9422 35 1 6.5256 -11.8201 -0.9422 36 1 4.2633 -7.9643 2.1350 37 1 2.6154 -6.1363 2.1308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819221650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -34.416522 kcal Electronic energy + Delta-G solvation = -20195.783325 eV Core-core repulsion = 16938.558138 eV Total energy + Delta-G solvation = -3257.225186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19529 -39.32074 -37.61870 -36.27815 -34.82044 -32.55710 -31.06585 -30.82787 -29.60472 -26.93172 -24.78913 -24.49762 -22.54566 -21.96693 -21.37681 -20.66378 -18.36082 -17.85007 -17.27276 -16.63074 -15.86228 -15.44481 -15.06166 -14.61520 -14.60065 -14.46212 -14.32275 -14.03426 -13.70291 -13.47711 -13.27378 -12.82125 -12.50009 -12.40109 -11.72940 -11.57035 -11.24818 -11.17673 -10.95828 -10.73171 -10.62467 -10.40727 -10.28539 -9.90235 -9.18061 -8.86739 -8.48805 -7.97520 -7.29026 -6.03347 -4.05217 1.27783 1.48546 1.95565 2.45142 2.96516 3.31449 3.38732 3.44218 3.58418 3.85472 4.15629 4.17000 4.44234 4.68045 4.76850 4.91655 4.92583 5.07653 5.23568 5.32717 5.42127 5.49905 5.57060 5.64844 5.98362 6.17550 6.19117 6.30405 6.37600 6.51136 6.87323 6.98231 7.10799 7.23536 7.40634 7.63932 7.78530 8.11814 8.38342 8.59787 9.04419 9.59823 11.07805 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036042 B = 0.002877 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.688838 B = 9731.398434 C = 9791.474407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.095 3.905 12 C -0.083 4.083 13 C -0.089 4.089 14 C -0.153 4.153 15 C 0.163 3.837 16 N -0.567 5.567 17 C 0.059 3.941 18 C 0.042 3.958 19 O -0.323 6.323 20 C 0.642 3.358 21 O -0.500 6.500 22 C -0.152 4.152 23 C -0.069 4.069 24 H 0.261 0.739 25 H -0.013 1.013 26 H 0.029 0.971 27 H 0.329 0.671 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -22.979 -6.207 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.314 5.314 11 C -0.034 4.034 12 C -0.085 4.085 13 C -0.108 4.108 14 C -0.174 4.174 15 C 0.072 3.928 16 N -0.304 5.304 17 C -0.064 4.064 18 C -0.033 4.033 19 O -0.233 6.233 20 C 0.397 3.603 21 O -0.384 6.384 22 C -0.171 4.171 23 C -0.088 4.088 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.047 0.953 27 H 0.146 0.854 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.171 0.829 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.049 -22.870 -4.753 25.840 hybrid contribution 0.084 0.897 -1.244 1.536 sum 11.133 -21.974 -5.998 25.353 Atomic orbital electron populations 1.69970 1.06084 1.26705 1.51041 1.24994 0.94883 0.99394 0.95350 0.86423 0.80092 0.83301 0.77499 1.19630 1.21111 1.20967 1.21225 0.93589 0.90180 1.50164 0.91880 1.19594 0.90600 0.87307 0.95874 1.60726 1.21098 1.00563 1.49046 1.20873 0.93268 0.88612 1.00694 1.20091 0.98589 0.96989 0.92798 1.20850 0.96318 0.95534 0.98109 1.20560 1.01260 1.00212 0.95359 1.17349 0.91346 0.88914 0.95233 1.45336 1.42815 1.35463 1.06822 1.22961 0.98049 0.96246 0.89126 1.24347 1.01744 1.00741 0.76472 1.87325 1.58524 1.51667 1.25829 1.18457 0.78148 0.78477 0.85217 1.90973 1.62345 1.64318 1.20781 1.21554 0.99229 0.98446 0.97908 1.21003 0.95182 0.94220 0.98378 0.92954 0.99531 0.95286 0.85419 0.90803 0.95377 0.85607 0.86073 0.88165 0.88081 0.87125 0.87194 0.82931 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.07 5.44 -4.97 -0.03 5.04 16 10 N -0.68 -14.79 6.48 -116.33 -0.75 -15.54 16 11 C 0.09 1.68 5.81 -4.97 -0.03 1.65 16 12 C -0.08 -1.28 5.39 -104.59 -0.56 -1.84 16 13 C -0.09 -1.16 9.69 -39.61 -0.38 -1.54 16 14 C -0.15 -1.74 9.49 -39.40 -0.37 -2.11 16 15 C 0.16 2.09 6.63 -83.69 -0.56 1.53 16 16 N -0.57 -6.06 3.16 -118.27 -0.37 -6.44 16 17 C 0.06 0.30 6.49 -3.15 -0.02 0.28 16 18 C 0.04 0.17 8.23 37.73 0.31 0.48 16 19 O -0.32 -3.23 11.09 -37.85 -0.42 -3.65 16 20 C 0.64 8.24 8.77 53.71 0.47 8.71 16 21 O -0.50 -8.28 14.75 -19.13 -0.28 -8.56 16 22 C -0.15 -2.24 9.31 -39.39 -0.37 -2.60 16 23 C -0.07 -1.04 9.69 -39.61 -0.38 -1.43 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.33 6.83 8.72 -39.29 -0.34 6.49 16 28 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 29 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 0.98 7.31 -52.49 -0.38 0.60 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.15 2.42 5.24 -52.48 -0.28 2.14 16 37 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -34.57 317.86 -8.43 -43.00 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.77 Total: 1.15 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.34 Total: -5.33 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.39 Total: -48.20 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.70 Total: -12.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.57 -8.43 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819221650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.583 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds