Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38278 * 119.92857 * 269.72492 * 12 11 10 14 14 C 1.38118 * 120.06831 * 179.76617 * 13 12 11 15 15 C 1.38860 * 119.92780 * 0.52890 * 14 13 12 16 16 N 1.39956 * 120.06846 * 179.69775 * 15 14 13 17 17 C 1.47089 * 125.56030 * 359.74596 * 16 15 14 18 18 C 1.54090 * 103.78106 * 179.97438 * 17 16 15 19 19 O 1.45697 * 104.00545 * 0.32278 * 18 17 16 20 20 C 1.33778 * 109.47782 * 359.78533 * 19 18 17 21 21 O 1.21521 * 123.07128 * 180.02562 * 20 19 18 22 22 C 1.38865 * 119.86241 * 359.72463 * 15 14 13 23 23 C 1.38114 * 119.92894 * 0.02562 * 22 15 14 24 24 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 26 26 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 27 27 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 28 28 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 29 29 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 30 30 H 1.07997 * 119.96704 * 359.97438 * 13 12 11 31 31 H 1.08001 * 120.03512 * 180.23231 * 14 13 12 32 32 H 1.09003 * 110.56054 * 298.60936 * 17 16 15 33 33 H 1.09008 * 110.56646 * 61.45563 * 17 16 15 34 34 H 1.08999 * 110.69918 * 241.60344 * 18 17 16 35 35 H 1.08994 * 110.46065 * 118.92192 * 18 17 16 36 36 H 1.08006 * 120.03374 * 179.97438 * 22 15 14 37 37 H 1.08004 * 119.96065 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9720 -6.5421 -1.2005 14 6 3.9008 -7.5643 -1.2045 15 6 4.3674 -8.0811 -0.0031 16 7 5.3039 -9.1212 -0.0038 17 6 5.8712 -9.7607 -1.2007 18 6 6.8316 -10.8218 -0.6296 19 8 6.7001 -10.6759 0.8140 20 6 5.8248 -9.7014 1.0860 21 8 5.5295 -9.3722 2.2179 22 6 3.9025 -7.5641 1.1990 23 6 2.9776 -6.5384 1.1962 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8400 -3.5483 -0.7836 28 1 0.8815 -4.9816 0.8895 29 1 0.8795 -4.9814 -0.8905 30 1 2.6048 -6.1432 -2.1346 31 1 4.2602 -7.9645 -2.1411 32 1 5.0858 -10.2321 -1.7915 33 1 6.4185 -9.0333 -1.8005 34 1 7.8565 -10.6219 -0.9422 35 1 6.5256 -11.8201 -0.9422 36 1 4.2633 -7.9643 2.1350 37 1 2.6154 -6.1363 2.1308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819221650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = -58.783544 kcal Electronic energy + Delta-G solvation = -20196.839958 eV Core-core repulsion = 16938.558138 eV Total energy + Delta-G solvation = -3258.281820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.96220 -40.35514 -38.57757 -37.49161 -36.24399 -34.52682 -32.09453 -31.92002 -30.49130 -28.66273 -26.18603 -25.21632 -23.89974 -23.16300 -22.87661 -21.70525 -19.20584 -18.66583 -18.49629 -18.03670 -17.07695 -16.84448 -16.47701 -15.81108 -15.68370 -15.34150 -15.22271 -15.18723 -14.87366 -14.78570 -14.38865 -14.28735 -13.50459 -13.40297 -13.25343 -13.09845 -12.86460 -12.65446 -12.49959 -12.20200 -11.89820 -11.83906 -11.39984 -11.27353 -11.12740 -10.66979 -9.92396 -9.17196 -8.92107 -8.22543 -6.33783 0.20084 0.43007 1.17818 1.41202 1.42503 1.51751 1.56375 2.40352 2.43187 2.78783 3.10670 3.23192 3.47374 3.74435 3.94117 3.95306 4.04012 4.09046 4.31983 4.42699 4.46495 4.57647 4.63692 4.69681 4.76965 4.80078 5.08341 5.11409 5.24097 5.29636 5.33085 5.46120 5.60926 5.74643 5.99627 6.02775 6.20998 6.44287 6.71684 6.73076 6.89185 7.37228 8.89082 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036042 B = 0.002877 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.688838 B = 9731.398434 C = 9791.474407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.685 5.685 11 C 0.100 3.900 12 C -0.101 4.101 13 C -0.085 4.085 14 C -0.135 4.135 15 C 0.166 3.834 16 N -0.567 5.567 17 C 0.051 3.949 18 C 0.037 3.963 19 O -0.338 6.338 20 C 0.637 3.363 21 O -0.554 6.554 22 C -0.171 4.171 23 C -0.081 4.081 24 H 0.266 0.734 25 H -0.034 1.034 26 H -0.001 1.001 27 H 0.336 0.664 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.146 0.854 31 H 0.167 0.833 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.083 -23.957 -8.985 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.029 4.029 12 C -0.103 4.103 13 C -0.104 4.104 14 C -0.155 4.155 15 C 0.074 3.926 16 N -0.304 5.304 17 C -0.069 4.069 18 C -0.036 4.036 19 O -0.247 6.247 20 C 0.392 3.608 21 O -0.441 6.441 22 C -0.192 4.192 23 C -0.100 4.100 24 H 0.074 0.926 25 H -0.016 1.016 26 H 0.018 0.982 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.069 -23.902 -7.581 28.277 hybrid contribution -0.476 1.032 -0.439 1.219 sum 12.594 -22.869 -8.021 27.312 Atomic orbital electron populations 1.70090 1.07775 1.27985 1.51592 1.25952 0.95802 1.03379 0.94583 0.85274 0.78896 0.78267 0.77794 1.18739 1.20051 1.20504 1.21568 0.93780 0.91440 1.50515 0.91874 1.19235 0.90627 0.88728 0.93433 1.60572 1.20509 1.01004 1.49519 1.20817 0.93918 0.87645 1.00522 1.19856 0.99335 0.97133 0.93948 1.21096 0.96059 0.95515 0.97707 1.20902 0.99564 0.98698 0.96358 1.17470 0.91163 0.89014 0.94976 1.45453 1.41897 1.34628 1.08379 1.23480 0.99146 0.96868 0.87403 1.24902 1.03420 1.02252 0.73005 1.87299 1.57369 1.50360 1.29721 1.18696 0.78272 0.78759 0.85043 1.90929 1.64150 1.66029 1.23036 1.21473 1.00008 0.99059 0.98619 1.20937 0.95889 0.94911 0.98244 0.92568 1.01586 0.98243 0.84631 0.91900 0.94544 0.83647 0.81529 0.85381 0.85666 0.84382 0.84179 0.84692 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -30.97 9.32 25.60 0.24 -30.73 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.28 5.44 85.56 0.47 11.75 16 10 N -0.69 -30.24 6.48 -521.96 -3.38 -33.62 16 11 C 0.10 3.62 5.81 85.56 0.50 4.12 16 12 C -0.10 -3.10 5.39 -19.85 -0.11 -3.21 16 13 C -0.08 -2.01 9.69 22.25 0.22 -1.79 16 14 C -0.14 -2.57 9.49 22.39 0.21 -2.36 16 15 C 0.17 3.99 6.63 38.14 0.25 4.24 16 16 N -0.57 -10.85 3.16 -759.79 -2.40 -13.26 16 17 C 0.05 0.28 6.49 86.64 0.56 0.84 16 18 C 0.04 0.15 8.23 72.35 0.60 0.74 16 19 O -0.34 -6.21 11.09 -47.38 -0.53 -6.73 16 20 C 0.64 16.05 8.77 129.91 1.14 17.19 16 21 O -0.55 -19.25 14.75 19.62 0.29 -18.96 16 22 C -0.17 -5.22 9.31 22.39 0.21 -5.01 16 23 C -0.08 -2.56 9.69 22.25 0.22 -2.34 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 26 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.34 13.95 8.72 -89.70 -0.78 13.16 16 28 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.17 1.66 7.31 -2.91 -0.02 1.64 16 32 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.13 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.14 4.63 5.24 -2.91 -0.02 4.61 16 37 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -78.98 317.86 1.56 -77.42 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.31 Total: 11.04 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.96 Total: -6.04 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.50 Total: -103.45 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.24 Total: -25.69 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -78.98 1.56 -77.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819221650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.637 kcal (2) G-P(sol) polarization free energy of solvation -78.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds