Wall clock time and date at job start Mon Mar 30 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.20822 * 119.99962 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00059 * 179.97438 * 11 10 9 14 14 C 1.45201 * 117.00281 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47419 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47459 * 305.00454 * 15 14 13 17 17 C 1.53001 * 109.47268 * 184.99885 * 15 14 13 18 18 C 1.52998 * 109.47268 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46851 * 60.00322 * 18 17 15 20 20 C 1.53001 * 109.46921 * 299.99890 * 19 18 17 21 21 C 1.52998 * 109.47268 * 60.00365 * 20 19 18 22 22 F 1.39901 * 109.47014 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47213 * 59.99816 * 21 20 19 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 28 28 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 29 29 H 1.08998 * 109.46979 * 300.00440 * 14 13 11 30 30 H 1.08999 * 109.46835 * 59.99810 * 14 13 11 31 31 H 1.08997 * 109.46963 * 300.00441 * 17 15 14 32 32 H 1.09007 * 109.46531 * 60.00316 * 17 15 14 33 33 H 1.08996 * 109.47076 * 180.02562 * 18 17 15 34 34 H 1.09000 * 109.46955 * 300.00636 * 18 17 15 35 35 H 1.08994 * 109.47436 * 60.00142 * 19 18 17 36 36 H 1.09006 * 109.47106 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46531 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47345 * 299.99726 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5286 -2.6366 -0.0001 12 8 6.1327 -1.5903 0.0012 13 8 6.1997 -3.7990 -0.0006 14 6 7.6497 -3.7231 0.0001 15 6 8.2345 -5.1370 0.0001 16 1 7.8282 -5.6982 0.8416 17 6 9.7572 -5.0591 0.1265 18 6 10.3421 -6.4729 0.1259 19 6 9.9742 -7.1763 -1.1820 20 6 8.4515 -7.2542 -1.3084 21 6 7.8666 -5.8404 -1.3078 22 9 6.4743 -5.9117 -1.4240 23 9 8.3879 -5.1197 -2.3876 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 3.6579 -3.1514 0.8880 28 1 3.6585 -3.1495 -0.8920 29 1 7.9860 -3.1904 -0.8894 30 1 7.9852 -3.1915 0.8905 31 1 10.1634 -4.4979 -0.7150 32 1 10.0192 -4.5575 1.0582 33 1 11.4268 -6.4173 0.2164 34 1 9.9358 -7.0344 0.9672 35 1 10.3804 -6.6148 -2.0233 36 1 10.3905 -8.1838 -1.1823 37 1 8.1895 -7.7558 -2.2401 38 1 8.0453 -7.8159 -0.4672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835637716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:21 Heat of formation + Delta-G solvation = -219.516602 kcal Electronic energy + Delta-G solvation = -22016.181575 eV Core-core repulsion = 18300.240660 eV Total energy + Delta-G solvation = -3715.940915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02342 -46.95659 -40.06956 -38.24885 -36.20759 -33.59318 -32.63032 -31.35689 -30.42237 -27.08491 -25.65180 -23.24374 -22.31472 -21.48248 -20.41073 -19.69880 -17.55338 -17.43362 -17.07624 -16.89470 -16.50321 -15.84883 -15.57283 -14.88762 -14.30949 -14.20839 -14.09834 -13.83388 -13.61944 -13.30705 -13.13192 -12.82213 -12.65084 -12.60080 -12.34585 -12.17479 -11.86407 -11.54631 -11.41016 -11.20822 -11.10788 -10.99868 -10.54455 -10.30793 -10.28796 -10.12816 -9.89232 -9.66447 -9.23267 -8.53533 -6.05092 -4.04666 2.72997 2.92915 3.35850 3.42679 3.51893 3.52489 3.78636 3.99852 4.06317 4.48074 4.48355 4.55191 4.66377 4.76735 4.81087 4.95082 5.14151 5.17874 5.27419 5.29651 5.35866 5.45427 5.48810 5.52711 5.61881 5.63450 5.70838 5.89140 6.04302 6.07416 6.51523 6.81480 7.26601 7.34261 7.73287 8.24011 8.49735 8.97627 9.56788 11.07563 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040904 B = 0.003583 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.372400 B = 7811.751142 C = 8126.621629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.287 1.287 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.459 3.541 12 O -0.513 6.513 13 O -0.355 6.355 14 C 0.063 3.937 15 C -0.125 4.125 16 H 0.111 0.889 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.159 4.159 21 C 0.293 3.707 22 F -0.186 7.186 23 F -0.200 7.200 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.640 -16.435 -0.128 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.132 4.132 11 C 0.303 3.697 12 O -0.401 6.401 13 O -0.272 6.272 14 C -0.012 4.012 15 C -0.144 4.144 16 H 0.129 0.871 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.197 4.197 21 C 0.257 3.743 22 F -0.166 7.166 23 F -0.181 7.181 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.668 -15.989 -0.166 27.740 hybrid contribution 0.313 1.067 -0.114 1.118 sum 22.981 -14.922 -0.280 27.402 Atomic orbital electron populations 1.69908 1.06266 1.27039 1.50728 1.24958 0.94727 0.99191 0.94258 0.86801 0.80606 0.83421 0.78754 1.20180 1.18597 1.21309 1.21041 0.88853 0.94809 1.51693 0.90624 1.19483 0.96902 0.89680 0.97883 1.21537 0.83377 1.03433 1.04900 1.24742 0.92766 0.80870 0.71323 1.90612 1.70705 1.33130 1.45617 1.86618 1.19992 1.36022 1.84593 1.22902 0.78906 0.95845 1.03527 1.22250 0.98015 0.96705 0.97457 0.87098 1.21534 0.91448 0.98332 1.03908 1.21590 1.01268 0.95201 0.97852 1.21544 0.93721 1.01846 0.98733 1.22550 0.97689 0.94033 1.05429 1.20958 0.75927 0.92432 0.84973 1.93089 1.30160 1.96926 1.96463 1.92978 1.86563 1.80204 1.58354 0.92620 0.95621 0.96082 0.88349 0.88239 0.90688 0.90332 0.90458 0.90018 0.90732 0.91191 0.90818 0.90461 0.89365 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.53 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.09 -1.94 5.75 -27.88 -0.16 -2.10 16 11 C 0.46 9.00 7.96 36.01 0.29 9.28 16 12 O -0.51 -11.35 15.73 -18.75 -0.29 -11.65 16 13 O -0.35 -5.92 8.68 -39.24 -0.34 -6.26 16 14 C 0.06 0.83 4.78 37.16 0.18 1.01 16 15 C -0.13 -1.22 2.15 -90.62 -0.20 -1.42 16 16 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.11 -0.80 5.08 -26.73 -0.14 -0.94 16 18 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 19 C -0.12 -0.69 5.80 -26.73 -0.16 -0.85 16 20 C -0.16 -1.19 5.45 -26.73 -0.15 -1.33 16 21 C 0.29 3.23 1.63 -26.73 -0.04 3.19 16 22 F -0.19 -2.65 15.48 2.25 0.03 -2.62 16 23 F -0.20 -2.54 15.42 2.25 0.03 -2.50 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.03 0.67 7.16 -51.93 -0.37 0.29 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 29 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 30 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 32 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.47 7.80 -51.93 -0.41 0.07 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -33.62 316.13 -6.53 -40.15 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -5.78 Total: -4.95 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.05 Total: -7.58 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.64 Total: -17.91 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.07 Total: -5.12 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.62 -6.53 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835637716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.364 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds