Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39712 * 120.19552 * 79.03735 * 3 2 1 5 5 C 1.37817 * 119.90165 * 180.32201 * 4 3 2 6 6 C 1.38510 * 120.29880 * 359.65322 * 5 4 3 7 7 C 1.38105 * 120.39138 * 0.02562 * 6 5 4 8 8 C 1.38652 * 120.09162 * 0.02562 * 7 6 5 9 9 O 1.35699 * 120.14917 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00139 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.47164 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47164 * 55.00068 * 11 10 9 13 13 O 1.42903 * 109.47171 * 294.99802 * 11 10 9 14 14 C 1.53003 * 109.47376 * 175.00429 * 11 10 9 15 15 N 1.46900 * 109.47407 * 184.99739 * 14 11 10 16 16 C 1.46902 * 110.99888 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.46722 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00289 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47463 * 59.99902 * 21 19 17 23 23 H 1.48505 * 109.47345 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47188 * 299.99783 * 21 19 17 25 25 H 1.08004 * 120.04617 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.85297 * 179.68202 * 5 4 3 27 27 H 1.07996 * 119.80917 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.96125 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47098 * 60.00356 * 10 9 8 30 30 H 1.08997 * 109.47681 * 300.00068 * 10 9 8 31 31 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 32 32 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 33 33 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 34 34 H 1.00901 * 110.99392 * 56.04464 * 15 14 11 35 35 H 1.08994 * 109.47353 * 299.99985 * 16 15 14 36 36 H 1.08992 * 109.46815 * 60.00343 * 16 15 14 37 37 H 0.96999 * 120.00286 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 -0.2287 -1.1855 5 6 4.6489 -0.2333 -1.1773 6 6 5.3415 -0.0044 0.0002 7 6 4.6592 0.2302 1.1778 8 6 3.2727 0.2374 1.1883 9 8 2.6011 0.4673 2.3448 10 6 3.3863 0.6942 3.5169 11 6 2.4614 0.9321 4.7123 12 1 1.7691 0.0956 4.8081 13 8 1.7244 2.1398 4.5114 14 6 3.2973 1.0511 5.9882 15 7 2.4048 1.1597 7.1500 16 6 3.1744 1.2754 8.3960 17 6 2.2272 1.3838 9.5630 18 1 1.1603 1.3679 9.3959 19 6 2.7226 1.5032 10.8442 20 7 4.0217 1.5221 11.0477 21 14 1.5485 1.6384 12.2908 22 1 0.6927 0.4262 12.3487 23 1 2.3264 1.7552 13.5504 24 1 0.6931 2.8406 12.1234 25 1 2.7348 -0.4076 -2.1059 26 1 5.1914 -0.4158 -2.0932 27 1 6.4214 -0.0094 -0.0025 28 1 5.2062 0.4082 2.0918 29 1 4.0188 1.5691 3.3668 30 1 4.0117 -0.1774 3.7098 31 1 2.2777 2.9273 4.4175 32 1 3.9261 0.1671 6.0944 33 1 3.9262 1.9394 5.9290 34 1 1.7672 0.3787 7.1902 35 1 3.8020 0.3927 8.5187 36 1 3.8027 2.1649 8.3536 37 1 4.3703 1.6057 11.9491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863555038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = -60.782639 kcal Electronic energy + Delta-G solvation = -19803.903868 eV Core-core repulsion = 16545.535361 eV Total energy + Delta-G solvation = -3258.368507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38859 -39.34887 -38.07945 -37.40362 -36.40191 -34.45123 -32.53124 -31.79008 -30.76755 -28.78300 -26.09880 -24.86842 -23.66660 -23.00403 -22.51897 -20.19158 -18.93171 -18.47215 -17.79637 -17.53482 -16.86453 -16.55056 -16.24162 -15.93486 -15.56676 -15.48493 -15.23443 -14.86138 -14.54017 -14.28515 -14.13128 -14.02742 -13.73215 -13.39961 -13.21770 -12.98817 -12.70172 -12.60147 -12.52825 -12.25176 -12.10737 -11.98658 -11.76364 -11.44671 -10.92582 -10.66990 -10.01182 -9.26863 -9.11423 -8.24789 -6.35308 -0.16777 0.41747 1.40472 1.43434 1.51546 1.64848 1.91760 1.97448 2.39210 2.89351 2.92807 3.08737 3.34868 3.52420 3.86038 3.86468 3.91328 4.06757 4.13876 4.26133 4.35862 4.41272 4.45575 4.52454 4.66864 4.88889 4.97884 5.06171 5.21429 5.24763 5.35661 5.51461 5.58993 5.75861 5.99863 6.23917 6.40162 6.50878 6.66416 6.82823 6.89641 7.35506 8.86373 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.002751 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.820263 B =10174.630111 C =10819.931183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.280 3.720 3 C -0.095 4.095 4 C -0.029 4.029 5 C -0.154 4.154 6 C -0.038 4.038 7 C -0.216 4.216 8 C 0.161 3.839 9 O -0.326 6.326 10 C 0.033 3.967 11 C 0.122 3.878 12 H 0.090 0.910 13 O -0.563 6.563 14 C 0.035 3.965 15 N -0.687 5.687 16 C 0.210 3.790 17 C -0.540 4.540 18 H 0.060 0.940 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.270 1.270 25 H 0.156 0.844 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.384 0.616 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.333 0.667 35 H -0.034 1.034 36 H 0.005 0.995 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.507 -3.967 -25.794 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.034 4.034 3 C -0.099 4.099 4 C -0.049 4.049 5 C -0.171 4.171 6 C -0.057 4.057 7 C -0.235 4.235 8 C 0.112 3.888 9 O -0.239 6.239 10 C -0.042 4.042 11 C 0.062 3.938 12 H 0.108 0.892 13 O -0.370 6.370 14 C -0.095 4.095 15 N -0.318 5.318 16 C 0.083 3.917 17 C -0.578 4.578 18 H 0.078 0.922 19 C -0.194 4.194 20 N -0.571 5.571 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.196 1.196 25 H 0.174 0.826 26 H 0.185 0.815 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.150 0.850 35 H -0.016 1.016 36 H 0.023 0.977 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.085 -3.660 -25.621 26.587 hybrid contribution 0.745 -0.415 1.337 1.586 sum 6.830 -4.075 -24.284 25.553 Atomic orbital electron populations 1.81224 1.13700 1.11518 1.08974 1.25938 0.93037 0.92143 0.92252 1.15638 0.83233 1.16571 0.94453 1.21332 0.95182 0.93245 0.95122 1.21417 0.92789 1.02760 1.00180 1.21666 1.02103 0.91073 0.90833 1.21519 0.91002 1.08772 1.02179 1.19282 0.91729 0.93126 0.84700 1.86110 1.37209 1.84735 1.15839 1.23708 0.94090 1.03876 0.82549 1.21786 0.93263 0.88447 0.90343 0.89231 1.86626 1.37984 1.17424 1.94926 1.22520 0.94924 1.01517 0.90492 1.60428 1.20034 1.48745 1.02554 1.19206 0.92357 0.93616 0.86571 1.21524 0.93816 1.50461 0.92047 0.92224 1.25892 0.96954 0.94590 1.01984 1.70052 1.13335 1.51107 1.22654 0.85427 0.78493 0.79065 0.77572 1.19272 1.20500 1.19554 0.82597 0.81504 0.81737 0.82893 0.88623 0.88532 0.76676 0.93957 0.90288 0.85010 1.01647 0.97720 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.20 18.54 19.00 0.35 -14.85 16 2 C 0.28 7.29 14.87 88.33 1.31 8.61 16 3 C -0.09 -1.76 5.75 -21.21 -0.12 -1.88 16 4 C -0.03 -0.30 9.75 22.53 0.22 -0.08 16 5 C -0.15 -0.93 10.02 22.23 0.22 -0.70 16 6 C -0.04 -0.25 10.03 22.30 0.22 -0.03 16 7 C -0.22 -2.51 9.03 22.34 0.20 -2.31 16 8 C 0.16 2.99 6.69 22.84 0.15 3.14 16 9 O -0.33 -7.75 9.53 -85.55 -0.82 -8.57 16 10 C 0.03 0.62 4.37 71.98 0.31 0.94 16 11 C 0.12 3.24 3.43 30.60 0.10 3.35 16 12 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 13 O -0.56 -17.28 13.25 -144.35 -1.91 -19.19 16 14 C 0.04 1.10 5.32 86.30 0.46 1.56 16 15 N -0.69 -29.16 6.44 -517.94 -3.34 -32.49 16 16 C 0.21 11.05 5.44 85.56 0.47 11.52 16 17 C -0.54 -31.05 9.32 25.60 0.24 -30.81 16 18 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 19 C 0.00 0.25 5.46 84.66 0.46 0.71 16 20 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 21 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 26 H 0.17 -0.04 8.06 -2.91 -0.02 -0.06 16 27 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 28 H 0.15 1.28 6.30 -2.91 -0.02 1.26 16 29 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 30 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 31 H 0.38 8.91 9.05 -74.06 -0.67 8.24 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.33 13.84 8.72 -89.69 -0.78 13.06 16 35 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 36 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.43 331.79 0.51 -75.92 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.35 Total: 13.99 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.26 Total: -6.00 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -2.70 Total: -102.69 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -2.73 Total: -27.76 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.43 0.51 -75.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863555038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.134 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds